HHsearch alignment for GI: 254780552 and conserved domain: TIGR02858

>TIGR02858 spore_III_AA stage III sporulation protein AA; InterPro: IPR014217 Proteins in this entry include the stage III sporulation protein AA that is encoded by one of several genes in the spoIIIA locus. This protein is only found in species that are capable of endospore formation..

Probab=97.30  E-value=0.00021  Score=46.44  Aligned_cols=84  Identities=26%  Similarity=0.345  Sum_probs=52.1

Q ss_pred             CCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCC-----CCCCHHHHHHHH------------------------
Q ss_conf             467767079973788557789999998618985312576-----443346766666------------------------
Q gi|254780552|r   50 RAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-----VIAKAGDLAALL------------------------  100 (334)
Q Consensus        50 ~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~~-----~~~~~~dl~~~~------------------------  100 (334)
T Consensus       119 ~~~~~~NTLiIsPPq~GKTTlLRDlaR~~StG~~~~~~~g~KVgivDERSEIAgC~~GvPQ~~vG~RtDVLD~CPKAEGm  198 (282)
T TIGR02858       119 RNGRVLNTLIISPPQCGKTTLLRDLARILSTGISKLGLKGKKVGIVDERSEIAGCVNGVPQLDVGIRTDVLDGCPKAEGM  198 (282)
T ss_pred             CCCCEEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEECCHHHHHHCCCCCCCCCCCCEEECCCCCHHHHH
T ss_conf             58944678888688988510488898886078542468997469984324656545882414467606751788537899


Q ss_pred             ----HHHHCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCC
Q ss_conf             ----641016378887576169899999999863475100
Q gi|254780552|r  101 ----TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL  136 (334)
Q Consensus       101 ----~~~~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i  136 (334)
T Consensus       199 MM~iRSMS-P~Viv~DEIGr--~ED~~Al~eA~naGV~~I  235 (282)
T TIGR02858       199 MMLIRSMS-PDVIVVDEIGR--EEDVEALLEALNAGVSVI  235 (282)
T ss_pred             HHHHHCCC-CCEEEEECCCC--HHHHHHHHHHHCCCCEEE
T ss_conf             99997069-85799814889--533899999861675688