HHsearch alignment for GI: 254780552 and conserved domain: TIGR02880
>TIGR02880 cbbX_cfxQ CbbX protein; InterPro: IPR000470 Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. The Cfx genes in Alcaligenes eutrophus encode a number of Calvin cycle enzymes . The observed sizes of two of the gene products, CfxX and CfxY, are 35 kDa and 27 kDa respectively . No functions could be assigned to CfxX and CfxY. These proteins show a high degree of similarity to the Bacillus subtilis stage V sporulation protein K . ; GO: 0005524 ATP binding.
Probab=99.30 E-value=1.3e-11 Score=90.58 Aligned_cols=187 Identities=26% Similarity=0.269 Sum_probs=114.9
Q ss_pred HHHHCCHHHHHHHHHH-----HHHHHHH-----CCCCCCCEEEECCCCCCHHHHHHHHHHHCC-CCCCCCCCCCCCC-HH
Q ss_conf 7782397999999999-----9998661-----467767079973788557789999998618-9853125764433-46
Q gi|254780552|r 27 LEEFTGQVEACSNLKV-----FIEAAKA-----RAEALDHVLFVGPPGLGKTTLAQVVARELG-VNFRSTSGPVIAK-AG 94 (334)
Q Consensus 27 l~dviGQ~~~~~~l~~-----~i~a~~~-----~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~-~~~~~~s~~~~~~-~~ 94 (334)
T Consensus 21 ~~~l~Gl~Pvk~r~~~~a~lllv~~~r~~~~l~~~~P~lhm~ftG~PGtGkttva~~m~~~l~~lGy~r-~G~~~~~trd 99 (284)
T TIGR02880 21 DRELIGLKPVKTRIREIAALLLVERLRQKLGLASAAPSLHMSFTGNPGTGKTTVALRMAQILHRLGYVR-KGHLVSVTRD 99 (284)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCC-CCCEEEEEHH
T ss_conf 676216415889999999999999999874221048832677516898724899999999998715400-3626785300
Q ss_pred HHHH------------HHHHHHCCCHHHHHHHHHCCH---------HHHHHHHHHHHCCCCCCC-CCCCCCCCEEECCCC
Q ss_conf 7666------------666410163788875761698---------999999998634751002-567876520004667
Q gi|254780552|r 95 DLAA------------LLTNLEDRDVLFIDEIHRLSI---------IVEEILYPAMEDFQLDLM-VGEGPSARSVKINLS 152 (334)
Q Consensus 95 dl~~------------~~~~~~~~~vlfiDEihrl~~---------~~q~~Ll~~mE~~~i~i~-~~~~~~a~~~~~~~~ 152 (334)
T Consensus 100 dlvGqy~GhtaPktke~lk~a-~GGvlfideayyly~P~nerdyG~eaieillq~men~r~~lvvi~aGy~~rm~----- 173 (284)
T TIGR02880 100 DLVGQYIGHTAPKTKEVLKRA-MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMD----- 173 (284)
T ss_pred HHHHHHHCCCCCHHHHHHHHH-CCCEEEEECHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHH-----
T ss_conf 131122125772268999874-28736642203321776410223799999999872365537888717078888-----
Q ss_pred CCEEEECCCCCCCCCHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC--------CCCHHHHHH
Q ss_conf 400552045543355454420120673264547999998777654121011111112332022--------101567887
Q gi|254780552|r 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRS--------RGTPRIAGR 224 (334)
Q Consensus 153 ~f~lI~ATt~~~~l~~~l~sR~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s--------~Gd~R~Aln 224 (334)
T Consensus 174 ---------~f~~snPG~~sr~a~h~~fPdy~~~~l~~ia~~~l~~~~y~~~~~~~~~~~~y~~~r~~~P~f~nars~rn 244 (284)
T TIGR02880 174 ---------SFFESNPGLSSRVAHHVDFPDYSEEELLAIAELMLEEQQYRLSAEAEEALADYIALRRKQPFFANARSIRN 244 (284)
T ss_pred ---------HHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf ---------87511786246776431588877678999999988654121118899999999998631783146788999
Q ss_pred HHHHH
Q ss_conf 77543
Q gi|254780552|r 225 LLRRV 229 (334)
Q Consensus 225 lLe~v 229 (334)
T Consensus 245 a~dr~ 249 (284)
T TIGR02880 245 ALDRA 249 (284)
T ss_pred HHHHH
T ss_conf 99889