HHsearch alignment for GI: 254780552 and conserved domain: TIGR02902
>TIGR02902 spore_lonB ATP-dependent protease LonB; InterPro: IPR014251 This entry represents LonB, a paralog of the ATP-dependent protease La (LonA, IPR004815 from INTERPRO). LonB proteins are unassigned peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SJ) and are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore during sporulation, under control of sigmaF . The lonB gene, despite being located immediately upstream of lonA, was shown to be monocistronic. LonB appears to be involved in the post-translation control of sigmaH, but lonB mutation did not produce an obvious sporulation defect under the conditions tested . Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and these are excluded from this entry. .
Probab=100.00 E-value=0 Score=314.33 Aligned_cols=233 Identities=27% Similarity=0.292 Sum_probs=187.2
Q ss_pred CCCCHHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCC----------CCC
Q ss_conf 4120578750789877823979999999999998661467767079973788557789999998618----------985
Q gi|254780552|r 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG----------VNF 82 (334)
Q Consensus 13 ~~~~~~~~~lRP~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~----------~~~ 82 (334)
T Consensus 50 ~Lt~PL~Ek~RP~SF~EIiGQe~GI~ALKAALC-----GPNPQHVIiYGPPGVGKTAAARLVLeeAKk~~~SPFke~A~F 124 (532)
T TIGR02902 50 RLTEPLSEKTRPKSFDEIIGQEEGIKALKAALC-----GPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEEAAF 124 (532)
T ss_pred ECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCC-----CCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEE
T ss_conf 167887746677763325673556899998606-----868963898788696178999999998650875378988668
Q ss_pred CCCCCCCCC------------CHHH--------H--H-------HHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHCCC
Q ss_conf 312576443------------3467--------6--6-------666641016378887576169899999999863475
Q gi|254780552|r 83 RSTSGPVIA------------KAGD--------L--A-------ALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 (334)
Q Consensus 83 ~~~s~~~~~------------~~~d--------l--~-------~~~~~~~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~ 133 (334)
T Consensus 125 VEiDATT~RFDERGIADPLIGSVHDPIYQGAGplG~AGIPQPK~GAVT~AH-GGvLFIDEIGELHP~~MNKLLKVLEDRK 203 (532)
T TIGR02902 125 VEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGVAGIPQPKPGAVTKAH-GGVLFIDEIGELHPVQMNKLLKVLEDRK 203 (532)
T ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCEEEECCCCCCCHHHHHHHHHHHHCCC
T ss_conf 985051036021466665677615853337654578855758777632025-8655121246658243531411330222
Q ss_pred CCCCCCCCCCCCEE-ECC-----------CCCCEEEECCCCCC-CCCHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCC
Q ss_conf 10025678765200-046-----------67400552045543-355454420120673264547999998777654121
Q gi|254780552|r 134 LDLMVGEGPSARSV-KIN-----------LSRFTLIAATTRVG-LLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200 (334)
Q Consensus 134 i~i~~~~~~~a~~~-~~~-----------~~~f~lI~ATt~~~-~l~~~l~sR~~~~~~~~~~~~~el~~il~~~~~~~~ 200 (334)
T Consensus 204 VF--LdSAYY~s~~pniP~hI~dIFqnGlPADFRLiGATTR~PeEIpPAlRSRC~EIF-FR~L~~EEi~~iAk~AaeKIg 280 (532)
T TIGR02902 204 VF--LDSAYYSSEDPNIPSHIRDIFQNGLPADFRLIGATTRNPEEIPPALRSRCVEIF-FRPLLKEEIKEIAKNAAEKIG 280 (532)
T ss_pred CH--HHCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCCCCCCHHHHCCCEEEE-ECCCCHHHHHHHHHHHHHHCC
T ss_conf 00--001235877786542789972067873401213336987767834650522677-168887899999876565304
Q ss_pred CHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHC
Q ss_conf 0111111123320221015678877754333455415886427787876542100
Q gi|254780552|r 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAI 255 (334)
Q Consensus 201 i~~~~~al~~ia~~s~Gd~R~AlnlLe~v~d~a~~~~~~~i~~~~~~~~l~~~~i 255 (334)
T Consensus 281 ~~l~~~Al~~I~~Ya~-nGREAvN~~QLAaG~a~~E~Rk~I~~~DieWV~~~G~y 334 (532)
T TIGR02902 281 LNLEKEALDLIAKYAS-NGREAVNLVQLAAGIALGENRKRILAEDIEWVIESGNY 334 (532)
T ss_pred CCCCHHHHHHHHHHHC-CCCHHHHHHHHHHHHEECCCCCEECHHHHHHHHHHCCC
T ss_conf 6547547999998740-54067789999731401288761205464455530478