HHsearch alignment for GI: 254780552 and conserved domain: TIGR02902

>TIGR02902 spore_lonB ATP-dependent protease LonB; InterPro: IPR014251 This entry represents LonB, a paralog of the ATP-dependent protease La (LonA, IPR004815 from INTERPRO). LonB proteins are unassigned peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SJ) and are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore during sporulation, under control of sigmaF . The lonB gene, despite being located immediately upstream of lonA, was shown to be monocistronic. LonB appears to be involved in the post-translation control of sigmaH, but lonB mutation did not produce an obvious sporulation defect under the conditions tested . Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and these are excluded from this entry. .
Probab=100.00  E-value=0  Score=314.33  Aligned_cols=233  Identities=27%  Similarity=0.292  Sum_probs=187.2

Q ss_pred             CCCCHHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCC----------CCC
Q ss_conf             4120578750789877823979999999999998661467767079973788557789999998618----------985
Q gi|254780552|r   13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG----------VNF   82 (334)
Q Consensus        13 ~~~~~~~~~lRP~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~----------~~~   82 (334)
T Consensus        50 ~Lt~PL~Ek~RP~SF~EIiGQe~GI~ALKAALC-----GPNPQHVIiYGPPGVGKTAAARLVLeeAKk~~~SPFke~A~F  124 (532)
T TIGR02902        50 RLTEPLSEKTRPKSFDEIIGQEEGIKALKAALC-----GPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEEAAF  124 (532)
T ss_pred             ECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCC-----CCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEE
T ss_conf             167887746677763325673556899998606-----868963898788696178999999998650875378988668


Q ss_pred             CCCCCCCCC------------CHHH--------H--H-------HHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHCCC
Q ss_conf             312576443------------3467--------6--6-------666641016378887576169899999999863475
Q gi|254780552|r   83 RSTSGPVIA------------KAGD--------L--A-------ALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ  133 (334)
Q Consensus        83 ~~~s~~~~~------------~~~d--------l--~-------~~~~~~~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~  133 (334)
T Consensus       125 VEiDATT~RFDERGIADPLIGSVHDPIYQGAGplG~AGIPQPK~GAVT~AH-GGvLFIDEIGELHP~~MNKLLKVLEDRK  203 (532)
T TIGR02902       125 VEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGVAGIPQPKPGAVTKAH-GGVLFIDEIGELHPVQMNKLLKVLEDRK  203 (532)
T ss_pred             EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCEEEECCCCCCCHHHHHHHHHHHHCCC
T ss_conf             985051036021466665677615853337654578855758777632025-8655121246658243531411330222


Q ss_pred             CCCCCCCCCCCCEE-ECC-----------CCCCEEEECCCCCC-CCCHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCC
Q ss_conf             10025678765200-046-----------67400552045543-355454420120673264547999998777654121
Q gi|254780552|r  134 LDLMVGEGPSARSV-KIN-----------LSRFTLIAATTRVG-LLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG  200 (334)
Q Consensus       134 i~i~~~~~~~a~~~-~~~-----------~~~f~lI~ATt~~~-~l~~~l~sR~~~~~~~~~~~~~el~~il~~~~~~~~  200 (334)
T Consensus       204 VF--LdSAYY~s~~pniP~hI~dIFqnGlPADFRLiGATTR~PeEIpPAlRSRC~EIF-FR~L~~EEi~~iAk~AaeKIg  280 (532)
T TIGR02902       204 VF--LDSAYYSSEDPNIPSHIRDIFQNGLPADFRLIGATTRNPEEIPPALRSRCVEIF-FRPLLKEEIKEIAKNAAEKIG  280 (532)
T ss_pred             CH--HHCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCCCCCCHHHHCCCEEEE-ECCCCHHHHHHHHHHHHHHCC
T ss_conf             00--001235877786542789972067873401213336987767834650522677-168887899999876565304


Q ss_pred             CHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHC
Q ss_conf             0111111123320221015678877754333455415886427787876542100
Q gi|254780552|r  201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAI  255 (334)
Q Consensus       201 i~~~~~al~~ia~~s~Gd~R~AlnlLe~v~d~a~~~~~~~i~~~~~~~~l~~~~i  255 (334)
T Consensus       281 ~~l~~~Al~~I~~Ya~-nGREAvN~~QLAaG~a~~E~Rk~I~~~DieWV~~~G~y  334 (532)
T TIGR02902       281 LNLEKEALDLIAKYAS-NGREAVNLVQLAAGIALGENRKRILAEDIEWVIESGNY  334 (532)
T ss_pred             CCCCHHHHHHHHHHHC-CCCHHHHHHHHHHHHEECCCCCEECHHHHHHHHHHCCC
T ss_conf             6547547999998740-54067789999731401288761205464455530478