HHsearch alignment for GI: 254780552 and conserved domain: TIGR02903
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family; InterPro: IPR014252 This entry shows some relation to the widely distributed ATP-dependent protease La, also called Lon or LonA (IPR004815 from INTERPRO), but is more closely related to LonB (IPR014251 from INTERPRO), a LonA paralog found only in endospore-forming bacteria. Proteins in this entry are unassigned peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SJ). They are restricted to a subset of endospore-forming species, and probably participate in the program of endospore formation. We propose the designation LonC..
Probab=100.00 E-value=1.5e-43 Score=285.77 Aligned_cols=230 Identities=31% Similarity=0.396 Sum_probs=170.7
Q ss_pred HHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHC----------CCCCCCCC
Q ss_conf 57875078987782397999999999999866146776707997378855778999999861----------89853125
Q gi|254780552|r 17 ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL----------GVNFRSTS 86 (334)
Q Consensus 17 ~~~~~lRP~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l----------~~~~~~~s 86 (334)
T Consensus 144 s~~slLRP~~f~EiVGQerAI~aLl-----aK~aSPfPQHiiLYGPPGVGKTTaARl~LEe~K~~~~tPF~~DA~FvEVD 218 (616)
T TIGR02903 144 SIQSLLRPRAFSEIVGQERAIKALL-----AKLASPFPQHIILYGPPGVGKTTAARLALEEAKKLKNTPFAEDAPFVEVD 218 (616)
T ss_pred HHHHHCCCCCCCCCCCHHHHHHHHH-----HHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEC
T ss_conf 9998628766764333468999999-----76318886607855733884789999987621368744761137857515
Q ss_pred CCCC--------------------CC-HHHHH---------HHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCC
Q ss_conf 7644--------------------33-46766---------666641016378887576169899999999863475100
Q gi|254780552|r 87 GPVI--------------------AK-AGDLA---------ALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 (334)
Q Consensus 87 ~~~~--------------------~~-~~dl~---------~~~~~~~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i 136 (334)
T Consensus 219 GtTLRWDPREvTNPLLGSVHDPIYQGa~RDLAE~GvPEPk~GLVT~AH-GGvLFIDEIGELD~lLQnKLLKVLEDKrV~F 297 (616)
T TIGR02903 219 GTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKLGLVTDAH-GGVLFIDEIGELDPLLQNKLLKVLEDKRVEF 297 (616)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCC-CCEEEEECHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf 762667741014776776257655676401104787989898710047-7567650211222787632444322643665
Q ss_pred CC-CCCCCCCEEECC---------CCCCEEEECCCCCC-CCCHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHH
Q ss_conf 25-678765200046---------67400552045543-35545442012067326454799999877765412101111
Q gi|254780552|r 137 MV-GEGPSARSVKIN---------LSRFTLIAATTRVG-LLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTD 205 (334)
Q Consensus 137 ~~-~~~~~a~~~~~~---------~~~f~lI~ATt~~~-~l~~~l~sR~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~ 205 (334)
T Consensus 298 ~SsYYDpdD~NvPkYIK~lFe~GAPADFvLIGATTr~P~eINpALRSRCaEvf-FePL~p~dI~~Iv~~AA~klnv~L~~ 376 (616)
T TIGR02903 298 SSSYYDPDDENVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVF-FEPLTPEDIKEIVLNAAEKLNVKLAE 376 (616)
T ss_pred EECCCCCCCCCCCHHHHHHHCCCCCCCEEEECCCCCCHHHCCHHHHCCCCEEE-CCCCCHHHHHHHHHHHHHHCCCCCCC
T ss_conf 32124875378655888852268882568726615882440512330143132-17988789999999988861770003
Q ss_pred HHHHHHHCCC-CCCHHHHHHHHHHHHHHHHHHC-------CC-CCCHHHHHHHHHHHHC
Q ss_conf 1112332022-1015678877754333455415-------88-6427787876542100
Q gi|254780552|r 206 EAACEIAMRS-RGTPRIAGRLLRRVRDFAEVAH-------AK-TITREIADAALLRLAI 255 (334)
Q Consensus 206 ~al~~ia~~s-~Gd~R~AlnlLe~v~d~a~~~~-------~~-~i~~~~~~~~l~~~~i 255 (334)
T Consensus 377 gV~e~Ia~YTieG--RkAvnILAD~Yg~~ly~~~~~~~~~d~~~I~~~dv~evv~~sRl 433 (616)
T TIGR02903 377 GVEELIARYTIEG--RKAVNILADVYGYALYKKAEALKEEDKVTITADDVKEVVQISRL 433 (616)
T ss_pred CHHHHHHHCCCCC--HHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEHHHHHHHHHHCCC
T ss_conf 6487872147131--12223465467676530455567777426618677767753045