HHsearch alignment for GI: 254780552 and conserved domain: TIGR03345
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.65 E-value=4.2e-15 Score=111.88 Aligned_cols=180 Identities=24% Similarity=0.304 Sum_probs=117.6
Q ss_pred HHHCCHHHHHHHHHHHHHHHH----HCCCCCCCEEEECCCCCCHHHHHHHHHHHC-CC--CCCCCCCCCCCCHHH---HH
Q ss_conf 782397999999999999866----146776707997378855778999999861-89--853125764433467---66
Q gi|254780552|r 28 EEFTGQVEACSNLKVFIEAAK----ARAEALDHVLFVGPPGLGKTTLAQVVAREL-GV--NFRSTSGPVIAKAGD---LA 97 (334)
Q Consensus 28 ~dviGQ~~~~~~l~~~i~a~~----~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l-~~--~~~~~s~~~~~~~~d---l~ 97 (334)
T Consensus 566 ~~ViGQ~~Av~~v~~ai~~sraGl~d~~rPigsFLFlGPTGVGKTElAK~LA~~LFg~e~~liR~DMSEy~E~hsvsrLi 645 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVSRLK 645 (852)
T ss_pred HHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEECCHHHCCHHHHHHHC
T ss_conf 99728499999999999998717999999856899878998778999999999971986114784224321043687863
Q ss_pred ------------HHHHH---HHCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCC
Q ss_conf ------------66664---101637888757616989999999986347510025678765200046674005520455
Q gi|254780552|r 98 ------------ALLTN---LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTR 162 (334)
Q Consensus 98 ------------~~~~~---~~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~ 162 (334)
T Consensus 646 GaPPGYVGy~eGG~LTe~Vrr~PysVvLfDEIEKAHpdV~nilLQvlD~G~LtD~-------~Gr~vdF~N-tIIImTSN 717 (852)
T TIGR03345 646 GSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDG-------EGREIDFKN-TVILLTSN 717 (852)
T ss_pred CCCCCCCCCCCCCHHHHHHHHCCCEEEEECHHHHCCHHHHHHHHHHHCCCEEECC-------CCCEEECEE-EEEEECCC
T ss_conf 8999766748777210988809986888611300288999999987246777579-------999884521-29997572
Q ss_pred CC------------------------------CCCHHHHHCCCCEEECCCCCHHHHHHHHHHH--------HHH--CCCH
Q ss_conf 43------------------------------3554544201206732645479999987776--------541--2101
Q gi|254780552|r 163 VG------------------------------LLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG--------AKL--TGLA 202 (334)
Q Consensus 163 ~~------------------------------~l~~~l~sR~~~~~~~~~~~~~el~~il~~~--------~~~--~~i~ 202 (334)
T Consensus 718 ~Gs~~i~~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFlnRi~-ii~F~~L~~~~l~~Iv~~~l~~l~~rL~~~~~i~l~ 796 (852)
T TIGR03345 718 AGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMT-VIPYLPLDDDVLAAIVRLKLDRIARRLKENHGAELV 796 (852)
T ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCHHHHCCEE-EEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 4479998640376555668999999999998347988864566-897368999999999999999999999862896899
Q ss_pred HHHHHHHHHHCCCC
Q ss_conf 11111123320221
Q gi|254780552|r 203 VTDEAACEIAMRSR 216 (334)
Q Consensus 203 ~~~~al~~ia~~s~ 216 (334)
T Consensus 797 ~~~~~~~~l~~~g~ 810 (852)
T TIGR03345 797 YSEALVEHIVARCT 810 (852)
T ss_pred ECHHHHHHHHHHCC
T ss_conf 88999999998289