HHsearch alignment for GI: 254780552 and conserved domain: TIGR03346
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.81 E-value=6.5e-19 Score=135.18 Aligned_cols=187 Identities=26% Similarity=0.341 Sum_probs=122.0
Q ss_pred HCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHC----------CCCCCCCCCCC-
Q ss_conf 5078987782397999999999999866146776707997378855778999999861----------89853125764-
Q gi|254780552|r 21 LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL----------GVNFRSTSGPV- 89 (334)
Q Consensus 21 ~lRP~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l----------~~~~~~~s~~~- 89 (334)
T Consensus 166 ~A~~gklDpviGRd~Ei~r~i~IL~-Rr~KN----NpiLVGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i~~LDlg~L 240 (852)
T TIGR03346 166 RAREGKLDPVIGRDEEIRRTIQVLS-RRTKN----NPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGAL 240 (852)
T ss_pred HHHCCCCCCCCCCHHHHHHHHHHHH-HHCCC----CCCEECCCCCCHHHHHHHHHHHHHCCCCCHHHHHCCCEEEEHHHH
T ss_conf 9982899977383699999999998-73248----972127999879999999999986699997885185127528877
Q ss_pred CCC---HHH----HHHHHHHH---HCCCHHHHHHHHHC--------CHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCC
Q ss_conf 433---467----66666641---01637888757616--------9899999999863475100256787652000466
Q gi|254780552|r 90 IAK---AGD----LAALLTNL---EDRDVLFIDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINL 151 (334)
Q Consensus 90 ~~~---~~d----l~~~~~~~---~~~~vlfiDEihrl--------~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~ 151 (334)
T Consensus 241 vAGtkyRGeFEeRlk~ii~ev~~~~~~iILFIDEiHtliGaG~~~G~~DAaNlLKPaLarGel----------------- 303 (852)
T TIGR03346 241 IAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARGEL----------------- 303 (852)
T ss_pred HCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCC-----------------
T ss_conf 521530078999999999999858998799961255532688766641067774378747985-----------------
Q ss_pred CCCEEEECCCCCC--C---CCHHHHHCCCCEEECCCCCHHHHHHHHHHH----HHHCCCHHHHHHHHHHHCCCCC-----
Q ss_conf 7400552045543--3---554544201206732645479999987776----5412101111111233202210-----
Q gi|254780552|r 152 SRFTLIAATTRVG--L---LTNPLQDRFGIPIRLNFYEIEDLKTIVQRG----AKLTGLAVTDEAACEIAMRSRG----- 217 (334)
Q Consensus 152 ~~f~lI~ATt~~~--~---l~~~l~sR~~~~~~~~~~~~~el~~il~~~----~~~~~i~~~~~al~~ia~~s~G----- 217 (334)
T Consensus 304 ---r~IgATT~~EYrk~iEkD~AL~RRFq~-I~V~EPs~e~t~~IL~gl~~~yE~hH~V~i~d~Ai~aav~LS~RYi~~R 379 (852)
T TIGR03346 304 ---HCIGATTLDEYRKYIEKDAALERRFQP-VFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDR 379 (852)
T ss_pred ---EEEEECCHHHHHHHHHCCHHHHHHCCC-CCCCCCCHHHHHHHHHHHHHHHHHCCCCEECHHHHHHHHHHHCCCCCCC
T ss_conf ---599827899999883226889973771-2047998689999999769999762792673999999999713466778
Q ss_pred -CHHHHHHHHHHHHHHH
Q ss_conf -1567887775433345
Q gi|254780552|r 218 -TPRIAGRLLRRVRDFA 233 (334)
Q Consensus 218 -d~R~AlnlLe~v~d~a 233 (334)
T Consensus 380 ~LPDKAIDlLDeA~a~~ 396 (852)
T TIGR03346 380 FLPDKAIDLIDEAAARI 396 (852)
T ss_pred CCCHHHHHHHHHHHHHH
T ss_conf 89618999999999988