HHsearch alignment for GI: 254780552 and conserved domain: TIGR03420
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.79 E-value=2e-18 Score=132.17 Aligned_cols=202 Identities=20% Similarity=0.208 Sum_probs=139.7
Q ss_pred CCHHHHCC--HHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCC---CCCCCCCCCCCHHHHHHH
Q ss_conf 98778239--7999999999999866146776707997378855778999999861898---531257644334676666
Q gi|254780552|r 25 RTLEEFTG--QVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN---FRSTSGPVIAKAGDLAAL 99 (334)
Q Consensus 25 ~~l~dviG--Q~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~---~~~~s~~~~~~~~dl~~~ 99 (334)
T Consensus 12 ~tfdnFi~~~N~~~~~~l~~~~~~---~~--~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~yl~~~~~~--~~~~~~ 84 (226)
T TIGR03420 12 PTFDNFYAGGNAELLAALRQLAAG---KG--DRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELA--QADPEV 84 (226)
T ss_pred CCHHCCCCCCHHHHHHHHHHHHHC---CC--CCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEECHHHHH--HHHHHH
T ss_conf 763123658679999999987646---68--88699989999988999999999986269957995299987--753999
Q ss_pred HHHHHCCCHHHHHHHHHCCH--HHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCCCCC---CHHHHHCC
Q ss_conf 66410163788875761698--99999999863475100256787652000466740055204554335---54544201
Q gi|254780552|r 100 LTNLEDRDVLFIDEIHRLSI--IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL---TNPLQDRF 174 (334)
Q Consensus 100 ~~~~~~~~vlfiDEihrl~~--~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~~~l---~~~l~sR~ 174 (334)
T Consensus 85 l~~l~~~d~l~iDDi~~i~~~~~~e~~lF~l~N~~~~----------------~~~~ilits~~~p~~l~~~l~dL~SRl 148 (226)
T TIGR03420 85 LEGLEQADLVCLDDVEAIAGQPEWQEALFHLYNRVRE----------------AGGRLLIAGRAAPAQLPLRLPDLRTRL 148 (226)
T ss_pred HHHCCCCCEEEEECHHHHCCCHHHHHHHHHHHHHHHH----------------HCCEEEEECCCCHHHCCCCHHHHHHHH
T ss_conf 9727448999996633343783789999999999986----------------528289867888232032017799999
Q ss_pred --CCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf --2067326454799999877765412101111111233202210156788777543334554158864277878765
Q gi|254780552|r 175 --GIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250 (334)
Q Consensus 175 --~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~Gd~R~AlnlLe~v~d~a~~~~~~~i~~~~~~~~l 250 (334)
T Consensus 149 ~~~~~~~I~~pdd~~~~~iL~k~~~~r~i~i~~~vi~yl~~r~~R~~~~l~~~l~~Ld~~-sl~~kr~ITi~l~kevL 225 (226)
T TIGR03420 149 AWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHGSRDMGSLMALLDALDRA-SLAAKRKITIPFVKEVL 225 (226)
T ss_pred HCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHH-HHHHCCCCCHHHHHHHH
T ss_conf 688568527999999999999999985998899999999986379899999999999999-99808999999999984