HHsearch alignment for GI: 254780552 and conserved domain: cd01121
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.63 E-value=0.0099 Score=36.21 Aligned_cols=65 Identities=26% Similarity=0.345 Sum_probs=35.4
Q ss_pred CCCCCHHHHCCHHHHH--HHHHHHHHHHHHCCCCCCCE-EEECCCCCCHHHHHHHHHHHC---CCCCCCCCC
Q ss_conf 0789877823979999--99999999866146776707-997378855778999999861---898531257
Q gi|254780552|r 22 LRPRTLEEFTGQVEAC--SNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVAREL---GVNFRSTSG 87 (334)
Q Consensus 22 lRP~~l~dviGQ~~~~--~~l~~~i~a~~~~~~~~~h~-Lf~GPpG~GKTtlA~iiA~~l---~~~~~~~s~ 87 (334)
T Consensus 48 ~~~~~l~~v~~~~~~R~~Tgi~El-DRVLGGGiVpGSvvLlgGePGIGKSTLLLQia~~la~~~~~vLYvSG 118 (372)
T cd01121 48 SKVIPLSDIEAEEEERIPTGIEEL-DRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSG 118 (372)
T ss_pred CCCEEHHHCCCCCCCCCCCCCHHH-HHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 775573443656555444783666-54005773067179982599886889999999999863993899824