HHsearch alignment for GI: 254780552 and conserved domain: cd01123
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.20 E-value=0.006 Score=37.53 Aligned_cols=25 Identities=28% Similarity=0.340 Sum_probs=19.3
Q ss_pred CCCCE-EEECCCCCCHHHHHHHHHHH
Q ss_conf 76707-99737885577899999986
Q gi|254780552|r 53 ALDHV-LFVGPPGLGKTTLAQVVARE 77 (334)
Q Consensus 53 ~~~h~-Lf~GPpG~GKTtlA~iiA~~ 77 (334)
T Consensus 17 ~~G~itEi~G~~GsGKTql~lqla~~ 42 (235)
T cd01123 17 ETGSITEIFGEFGSGKTQLCHQLAVT 42 (235)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 47879999999998499999999999