HHsearch alignment for GI: 254780552 and conserved domain: cd02030
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=96.37 E-value=0.0033 Score=39.09 Aligned_cols=27 Identities=30% Similarity=0.445 Sum_probs=23.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 799737885577899999986189853
Q gi|254780552|r 57 VLFVGPPGLGKTTLAQVVARELGVNFR 83 (334)
Q Consensus 57 ~Lf~GPpG~GKTtlA~iiA~~l~~~~~ 83 (334)
T Consensus 2 I~IEGnIG~GKTTl~~~La~~l~~~~~ 28 (219)
T cd02030 2 ITVDGNIASGKGKLAKELAEKLGMKYF 28 (219)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCC
T ss_conf 899678567999999999998598210