HHsearch alignment for GI: 254780552 and conserved domain: cd03293
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.66 E-value=0.0083 Score=36.67 Aligned_cols=22 Identities=45% Similarity=0.718 Sum_probs=19.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7997378855778999999861
Q gi|254780552|r 57 VLFVGPPGLGKTTLAQVVAREL 78 (334)
Q Consensus 57 ~Lf~GPpG~GKTtlA~iiA~~l 78 (334)
T Consensus 33 ~~iiGpsGsGKSTLl~~i~Gl~ 54 (220)
T cd03293 33 VALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred EEEECCCCCHHHHHHHHHHCCC
T ss_conf 9999999957999999997599