HHsearch alignment for GI: 254780552 and conserved domain: cd03295
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.12 E-value=0.0041 Score=38.57 Aligned_cols=23 Identities=35% Similarity=0.730 Sum_probs=19.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 79973788557789999998618
Q gi|254780552|r 57 VLFVGPPGLGKTTLAQVVARELG 79 (334)
Q Consensus 57 ~Lf~GPpG~GKTtlA~iiA~~l~ 79 (334)
T Consensus 30 ~~ilGpSG~GKSTllr~i~gl~~ 52 (242)
T cd03295 30 LVLIGPSGSGKTTTMKMINRLIE 52 (242)
T ss_pred EEEECCCCCHHHHHHHHHHCCCC
T ss_conf 99999999569999999975999