Query gi|254780552|ref|YP_003064965.1| Holliday junction DNA helicase RuvB [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 334
No_of_seqs 195 out of 4170
Neff 6.6
Searched_HMMs 39220
Date Sun May 29 22:36:58 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780552.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00635 ruvB Holliday juncti 100.0 0 0 743.4 18.6 305 25-329 1-305 (305)
2 PRK00080 ruvB Holliday junctio 100.0 0 0 674.1 26.1 326 5-330 2-327 (328)
3 COG2255 RuvB Holliday junction 100.0 0 0 661.3 23.4 330 5-334 2-332 (332)
4 PRK13341 recombination factor 100.0 0 0 553.8 18.6 279 14-333 14-312 (726)
5 PRK13342 recombination factor 100.0 0 0 551.8 18.4 271 17-333 2-289 (417)
6 COG2256 MGS1 ATPase related to 100.0 0 0 539.3 18.6 275 16-333 12-303 (436)
7 pfam05496 RuvB_N Holliday junc 100.0 0 0 489.8 15.7 233 6-238 1-234 (234)
8 KOG2028 consensus 100.0 0 0 468.3 17.3 277 16-333 126-433 (554)
9 TIGR02397 dnaX_nterm DNA polym 100.0 0 0 367.2 16.7 208 19-255 5-246 (363)
10 PRK05563 DNA polymerase III su 100.0 0 0 315.5 19.4 209 18-254 6-245 (541)
11 PRK07003 DNA polymerase III su 100.0 0 0 312.9 18.3 210 17-254 5-245 (816)
12 PRK06645 DNA polymerase III su 100.0 0 0 309.2 20.4 212 17-253 10-256 (507)
13 PRK08853 DNA polymerase III su 100.0 0 0 309.5 18.4 210 17-254 5-245 (717)
14 PRK09111 DNA polymerase III su 100.0 0 0 305.8 19.0 215 12-254 7-257 (600)
15 PRK06305 DNA polymerase III su 100.0 0 0 304.7 18.4 210 17-254 6-247 (462)
16 TIGR02902 spore_lonB ATP-depen 100.0 0 0 314.3 10.2 233 13-255 50-334 (532)
17 PRK06872 DNA polymerase III su 100.0 0 0 300.1 20.5 209 18-254 6-245 (696)
18 PRK07994 DNA polymerase III su 100.0 0 0 301.9 18.5 210 17-254 5-245 (643)
19 PRK08691 DNA polymerase III su 100.0 0 0 302.2 18.1 210 17-254 5-245 (704)
20 PRK12323 DNA polymerase III su 100.0 0 0 301.4 18.0 210 17-254 5-250 (721)
21 PRK07133 DNA polymerase III su 100.0 0 0 300.2 18.4 211 17-255 7-245 (718)
22 PRK06674 DNA polymerase III su 100.0 1.4E-45 0 298.3 19.8 209 18-254 6-245 (563)
23 PRK07270 DNA polymerase III su 100.0 2.8E-45 0 297.2 19.6 211 17-254 4-245 (557)
24 PRK06647 DNA polymerase III su 100.0 1.4E-45 0 298.7 18.1 210 17-254 5-245 (560)
25 PRK05648 DNA polymerase III su 100.0 1.4E-45 0 297.4 18.4 208 18-253 6-244 (705)
26 PRK08451 DNA polymerase III su 100.0 4.2E-45 0 294.9 20.3 209 17-253 3-242 (523)
27 PRK08770 DNA polymerase III su 100.0 2.8E-45 0 296.4 18.2 209 18-254 6-245 (663)
28 PRK07764 DNA polymerase III su 100.0 1.4E-44 0 292.0 18.5 207 18-251 5-244 (775)
29 PRK05896 DNA polymerase III su 100.0 1.5E-44 0 291.9 15.2 212 17-256 5-247 (613)
30 COG2812 DnaX DNA polymerase II 100.0 3.9E-44 0 289.4 14.0 211 17-255 5-246 (515)
31 PRK00440 rfc replication facto 100.0 9.7E-44 0 287.0 15.0 210 14-252 2-224 (318)
32 PRK12402 replication factor C 100.0 1.5E-43 0 285.8 15.0 191 16-230 3-231 (337)
33 TIGR02903 spore_lon_C ATP-depe 100.0 1.5E-43 0 285.8 11.4 230 17-255 144-433 (616)
34 PRK04195 replication factor C 100.0 1.1E-40 2.8E-45 268.4 18.6 273 17-331 3-289 (403)
35 KOG0989 consensus 100.0 5.2E-39 1.3E-43 258.1 17.0 201 17-246 25-246 (346)
36 KOG0991 consensus 100.0 1.2E-32 3.1E-37 219.1 14.2 262 9-303 8-291 (333)
37 PRK09112 DNA polymerase III su 100.0 2.1E-31 5.3E-36 211.6 19.4 185 18-227 13-243 (352)
38 PRK04132 replication factor C 100.0 4.1E-29 1E-33 197.6 17.3 148 155-311 677-836 (863)
39 PRK05564 DNA polymerase III su 100.0 2.7E-29 6.8E-34 198.7 12.3 174 26-228 2-193 (313)
40 COG1223 Predicted ATPase (AAA+ 100.0 8.7E-29 2.2E-33 195.6 14.0 216 20-252 113-354 (368)
41 PRK07471 DNA polymerase III su 100.0 1.1E-28 2.8E-33 194.9 11.9 179 22-227 11-239 (363)
42 CHL00176 ftsH cell division pr 100.0 9.9E-28 2.5E-32 189.1 15.6 211 25-253 174-417 (631)
43 TIGR01241 FtsH_fam ATP-depende 100.0 1.3E-28 3.4E-33 194.4 10.2 209 26-252 57-299 (505)
44 PRK07940 DNA polymerase III su 100.0 1.7E-27 4.3E-32 187.7 12.5 178 25-226 2-217 (395)
45 PRK03992 proteasome-activating 100.0 7.4E-27 1.9E-31 183.8 15.2 213 23-253 126-373 (390)
46 TIGR02881 spore_V_K stage V sp 99.9 1.7E-26 4.3E-31 181.6 14.8 196 25-252 3-237 (261)
47 TIGR00368 TIGR00368 Mg chelata 99.9 1.1E-27 2.8E-32 188.9 6.2 228 9-252 173-504 (505)
48 PRK10733 hflB ATP-dependent me 99.9 3.2E-26 8.2E-31 179.9 13.4 211 25-253 149-392 (644)
49 PRK13407 bchI magnesium chelat 99.9 2.4E-25 6.1E-30 174.5 15.4 218 23-251 3-304 (334)
50 KOG0730 consensus 99.9 2.7E-25 6.8E-30 174.2 14.5 210 24-251 430-672 (693)
51 PRK08058 DNA polymerase III su 99.9 1.7E-25 4.4E-30 175.4 13.2 171 25-227 2-206 (329)
52 TIGR00763 lon ATP-dependent pr 99.9 3.6E-27 9.3E-32 185.6 4.3 189 11-214 392-640 (941)
53 CHL00181 cbbX CbbX; Provisiona 99.9 2.2E-25 5.7E-30 174.7 12.6 187 26-231 20-252 (287)
54 KOG0990 consensus 99.9 3.3E-26 8.4E-31 179.8 5.5 197 10-230 23-237 (360)
55 PRK09862 putative ATP-dependen 99.9 1.2E-24 3.2E-29 170.1 12.1 217 25-258 188-497 (506)
56 PRK07399 DNA polymerase III su 99.9 9E-24 2.3E-28 164.9 10.8 175 26-228 2-224 (314)
57 COG0470 HolB ATPase involved i 99.9 4.9E-24 1.2E-28 166.5 8.9 169 28-230 1-204 (325)
58 COG1224 TIP49 DNA helicase TIP 99.9 8.3E-23 2.1E-27 159.0 15.1 127 107-253 293-432 (450)
59 KOG0733 consensus 99.9 8.9E-24 2.3E-28 164.9 10.0 185 19-217 177-394 (802)
60 CHL00081 chlI Mg-protoporyphyr 99.9 1.2E-22 3.1E-27 158.0 15.0 218 23-251 6-315 (347)
61 KOG2035 consensus 99.9 3.2E-22 8.1E-27 155.4 16.8 211 18-252 3-257 (351)
62 PRK00411 cdc6 cell division co 99.9 1.1E-21 2.9E-26 152.1 19.1 213 28-255 30-284 (394)
63 KOG0733 consensus 99.9 9.4E-23 2.4E-27 158.7 12.1 175 26-216 509-713 (802)
64 COG1222 RPT1 ATP-dependent 26S 99.9 2.8E-22 7.1E-27 155.8 13.9 224 13-251 131-390 (406)
65 KOG0734 consensus 99.9 3.5E-22 8.9E-27 155.2 13.8 215 20-252 296-540 (752)
66 pfam06068 TIP49 TIP49 C-termin 99.9 3.6E-22 9.1E-27 155.1 12.9 103 107-229 277-392 (395)
67 pfam01078 Mg_chelatase Magnesi 99.9 6.3E-23 1.6E-27 159.7 7.2 150 26-188 1-207 (207)
68 KOG1969 consensus 99.9 1.1E-21 2.9E-26 152.0 12.9 210 17-230 260-515 (877)
69 COG0606 Predicted ATPase with 99.9 1.3E-22 3.4E-27 157.7 7.4 215 25-251 176-483 (490)
70 KOG0731 consensus 99.9 2.4E-21 6.1E-26 150.1 13.1 212 24-251 307-551 (774)
71 TIGR02639 ClpA ATP-dependent C 99.9 1.3E-21 3.4E-26 151.6 10.9 194 27-226 496-747 (774)
72 KOG0736 consensus 99.9 3.9E-21 9.9E-26 148.8 12.9 181 26-222 670-882 (953)
73 CHL00195 ycf46 Ycf46; Provisio 99.9 1.7E-20 4.4E-25 144.8 15.6 205 25-251 225-461 (491)
74 KOG2004 consensus 99.9 6.4E-22 1.6E-26 153.5 8.3 213 11-229 394-641 (906)
75 PRK10787 DNA-binding ATP-depen 99.9 2.1E-21 5.4E-26 150.4 10.3 232 15-251 309-580 (784)
76 COG0464 SpoVK ATPases of the A 99.9 3.7E-20 9.4E-25 142.8 15.9 211 25-251 239-481 (494)
77 TIGR01242 26Sp45 26S proteasom 99.8 6.2E-21 1.6E-25 147.5 10.2 182 23-219 116-328 (364)
78 COG0714 MoxR-like ATPases [Gen 99.8 2.7E-20 6.9E-25 143.6 13.4 152 28-193 24-199 (329)
79 TIGR02928 TIGR02928 orc1/cdc6 99.8 1E-19 2.6E-24 140.1 16.1 267 29-322 18-354 (383)
80 COG0466 Lon ATP-dependent Lon 99.8 5.1E-21 1.3E-25 148.1 8.8 215 28-251 323-582 (782)
81 KOG1942 consensus 99.8 7E-20 1.8E-24 141.1 13.7 126 107-252 298-437 (456)
82 COG0465 HflB ATP-dependent Zn 99.8 3.6E-20 9.2E-25 142.9 11.6 210 25-252 147-389 (596)
83 PRK05201 hslU ATP-dependent pr 99.8 5E-20 1.3E-24 142.0 11.7 219 26-252 12-430 (442)
84 PRK13765 ATP-dependent proteas 99.8 3.7E-19 9.3E-24 136.7 14.3 146 106-252 227-399 (637)
85 PRK05342 clpX ATP-dependent pr 99.8 9.5E-20 2.4E-24 140.3 11.2 204 26-229 69-374 (411)
86 PRK07132 DNA polymerase III su 99.8 5.4E-20 1.4E-24 141.8 9.8 138 33-194 3-162 (303)
87 PRK10865 protein disaggregatio 99.8 5.8E-19 1.5E-23 135.5 13.3 188 21-234 171-402 (857)
88 TIGR03346 chaperone_ClpB ATP-d 99.8 6.5E-19 1.7E-23 135.2 13.4 187 21-233 166-396 (852)
89 pfam03215 Rad17 Rad17 cell cyc 99.8 8.8E-19 2.2E-23 134.4 14.0 201 12-229 3-258 (490)
90 PRK11034 clpA ATP-dependent Cl 99.8 5.7E-19 1.5E-23 135.5 11.4 206 21-252 179-432 (758)
91 PRK08769 DNA polymerase III su 99.8 6.5E-19 1.7E-23 135.2 11.7 165 33-227 9-210 (319)
92 KOG0738 consensus 99.8 1E-17 2.7E-22 127.8 17.1 178 26-217 210-415 (491)
93 pfam00004 AAA ATPase family as 99.8 9.9E-20 2.5E-24 140.2 6.5 110 57-181 1-130 (131)
94 pfam07726 AAA_3 ATPase family 99.8 9.9E-20 2.5E-24 140.2 6.2 113 56-175 1-130 (131)
95 TIGR03420 DnaA_homol_Hda DnaA 99.8 2E-18 5.1E-23 132.2 12.9 202 25-250 12-225 (226)
96 KOG0737 consensus 99.8 8.3E-19 2.1E-23 134.5 10.5 188 26-227 90-305 (386)
97 CHL00095 clpC Clp protease ATP 99.8 1.5E-18 3.9E-23 132.9 11.6 182 23-230 174-398 (823)
98 TIGR00382 clpX ATP-dependent C 99.8 9.2E-20 2.4E-24 140.4 5.3 189 26-215 98-402 (452)
99 PRK05707 DNA polymerase III su 99.8 2.2E-18 5.6E-23 132.0 12.1 152 53-227 20-205 (328)
100 PRK06871 DNA polymerase III su 99.8 5.1E-18 1.3E-22 129.7 11.5 151 54-228 22-205 (324)
101 pfam07728 AAA_5 AAA domain (dy 99.8 7.2E-19 1.8E-23 134.9 6.9 118 56-174 1-139 (139)
102 cd00009 AAA The AAA+ (ATPases 99.8 2.8E-18 7.1E-23 131.3 9.9 133 31-180 1-149 (151)
103 COG0542 clpA ATP-binding subun 99.8 1.7E-17 4.3E-22 126.5 12.9 192 28-227 491-748 (786)
104 TIGR01243 CDC48 AAA family ATP 99.8 3.8E-18 9.6E-23 130.5 9.1 157 25-197 203-388 (980)
105 COG1239 ChlI Mg-chelatase subu 99.8 2.9E-17 7.4E-22 125.1 12.8 215 26-252 15-321 (423)
106 KOG0740 consensus 99.8 4.2E-18 1.1E-22 130.2 8.4 185 18-217 143-354 (428)
107 TIGR03345 VI_ClpV1 type VI sec 99.7 2.9E-17 7.3E-22 125.1 12.4 185 21-231 180-408 (852)
108 pfam05491 RuvB_C Holliday junc 99.7 1.9E-18 4.9E-23 132.3 6.3 74 256-329 1-74 (75)
109 pfam00493 MCM MCM2/3/5 family. 99.7 4.9E-17 1.3E-21 123.7 12.6 146 29-183 25-207 (327)
110 PRK06090 DNA polymerase III su 99.7 4.8E-16 1.2E-20 117.6 17.3 148 54-228 24-204 (319)
111 TIGR01243 CDC48 AAA family ATP 99.7 3E-18 7.6E-23 131.1 5.7 177 26-220 539-747 (980)
112 TIGR02442 Cob-chelat-sub cobal 99.7 2.3E-17 5.9E-22 125.7 10.1 215 27-252 3-308 (688)
113 PRK11034 clpA ATP-dependent Cl 99.7 2.9E-16 7.4E-21 119.0 15.6 180 28-215 458-694 (758)
114 TIGR00678 holB DNA polymerase 99.7 3.1E-17 7.9E-22 124.9 8.9 147 53-222 12-216 (216)
115 PRK00149 dnaA chromosomal repl 99.7 1.1E-15 2.8E-20 115.4 16.5 258 21-309 111-398 (447)
116 KOG0742 consensus 99.7 5E-17 1.3E-21 123.6 9.2 163 23-197 349-529 (630)
117 pfam00308 Bac_DnaA Bacterial d 99.7 1.4E-16 3.7E-21 120.8 11.5 186 26-235 6-218 (219)
118 PRK05917 DNA polymerase III su 99.7 2.4E-16 6.1E-21 119.5 12.5 133 53-219 17-175 (290)
119 PRK08903 hypothetical protein; 99.7 3.8E-16 9.6E-21 118.3 13.3 196 25-251 15-224 (227)
120 COG1474 CDC6 Cdc6-related prot 99.7 1.8E-16 4.7E-21 120.2 11.7 207 30-252 19-264 (366)
121 COG0593 DnaA ATPase involved i 99.7 5.7E-15 1.5E-19 111.1 19.1 256 21-309 79-364 (408)
122 CHL00095 clpC Clp protease ATP 99.7 1.6E-15 4.2E-20 114.4 15.6 192 28-227 509-777 (823)
123 TIGR03015 pepcterm_ATPase puta 99.7 9.3E-16 2.4E-20 115.9 13.5 205 30-254 25-267 (269)
124 KOG2680 consensus 99.7 3E-16 7.6E-21 118.9 10.4 126 107-252 290-428 (454)
125 PRK08084 DNA replication initi 99.7 1.3E-15 3.3E-20 115.0 13.7 201 24-251 18-234 (235)
126 PRK07993 DNA polymerase III su 99.7 5.9E-16 1.5E-20 117.1 11.8 150 54-227 23-206 (334)
127 KOG0735 consensus 99.7 2.4E-16 6.2E-21 119.4 9.7 175 26-217 665-868 (952)
128 TIGR00390 hslU heat shock prot 99.7 4.7E-17 1.2E-21 123.8 5.9 222 26-255 9-454 (463)
129 PRK10865 protein disaggregatio 99.7 2.9E-16 7.3E-21 119.0 9.8 191 28-226 568-821 (857)
130 KOG0727 consensus 99.7 3.8E-16 9.7E-21 118.2 9.7 182 16-213 138-356 (408)
131 TIGR03346 chaperone_ClpB ATP-d 99.7 5.1E-16 1.3E-20 117.5 10.0 191 28-226 565-818 (852)
132 COG1219 ClpX ATP-dependent pro 99.7 2E-16 5E-21 120.0 7.8 203 26-228 58-362 (408)
133 KOG1970 consensus 99.7 2.3E-15 5.9E-20 113.5 13.3 202 9-229 63-319 (634)
134 KOG0652 consensus 99.7 7E-16 1.8E-20 116.6 10.5 180 23-217 165-375 (424)
135 PRK05642 DNA replication initi 99.7 2.4E-15 6.1E-20 113.4 12.9 205 25-251 16-233 (234)
136 KOG0730 consensus 99.7 1.3E-14 3.4E-19 108.8 16.6 187 22-226 179-394 (693)
137 KOG0732 consensus 99.7 6.8E-16 1.7E-20 116.7 9.2 180 25-220 262-475 (1080)
138 PRK08727 hypothetical protein; 99.7 6.6E-15 1.7E-19 110.7 14.2 200 25-252 16-230 (233)
139 TIGR03345 VI_ClpV1 type VI sec 99.6 4.2E-15 1.1E-19 111.9 12.7 180 28-216 566-810 (852)
140 PRK06893 DNA replication initi 99.6 5.4E-15 1.4E-19 111.2 12.6 199 25-251 13-228 (229)
141 PRK06964 DNA polymerase III su 99.6 3.8E-15 9.6E-20 112.2 11.7 148 53-227 19-227 (342)
142 TIGR00602 rad24 checkpoint pro 99.6 4.4E-15 1.1E-19 111.8 10.9 211 11-230 72-353 (670)
143 KOG0739 consensus 99.6 1.4E-15 3.7E-20 114.7 8.4 180 23-217 127-333 (439)
144 PRK10923 glnG nitrogen regulat 99.6 7.8E-14 2E-18 104.1 17.1 207 26-246 136-381 (469)
145 PRK05818 DNA polymerase III su 99.6 1.7E-14 4.3E-19 108.2 13.6 178 54-254 8-216 (262)
146 TIGR02639 ClpA ATP-dependent C 99.6 2.5E-15 6.4E-20 113.2 9.3 252 21-311 201-522 (774)
147 PTZ00112 origin recognition co 99.6 2.6E-15 6.6E-20 113.2 9.1 204 30-252 269-512 (650)
148 PRK11388 DNA-binding transcrip 99.6 1.4E-13 3.5E-18 102.6 17.8 251 26-295 323-620 (639)
149 PRK12422 chromosomal replicati 99.6 3.8E-14 9.7E-19 106.0 14.2 257 21-308 103-395 (455)
150 COG1220 HslU ATP-dependent pro 99.6 7.6E-15 1.9E-19 110.3 10.6 196 26-229 12-403 (444)
151 PRK07276 DNA polymerase III su 99.6 3.2E-14 8.2E-19 106.5 11.3 161 33-227 7-199 (290)
152 PRK08699 DNA polymerase III su 99.6 2E-14 5E-19 107.8 10.0 123 53-194 19-183 (325)
153 PRK10820 DNA-binding transcrip 99.6 1.2E-13 3.1E-18 102.9 13.6 206 26-246 202-440 (513)
154 PRK11361 acetoacetate metaboli 99.6 1E-12 2.7E-17 97.2 17.6 211 26-250 141-390 (457)
155 KOG0743 consensus 99.5 3.6E-14 9.3E-19 106.1 9.4 174 23-213 196-397 (457)
156 KOG0728 consensus 99.5 7.6E-14 1.9E-18 104.2 11.0 190 14-217 128-351 (404)
157 COG0542 clpA ATP-binding subun 99.5 8.4E-14 2.1E-18 103.9 10.6 188 21-235 163-395 (786)
158 COG1221 PspF Transcriptional r 99.5 1.7E-13 4.4E-18 102.0 11.7 202 22-234 72-310 (403)
159 KOG0651 consensus 99.5 4.4E-14 1.1E-18 105.6 7.4 136 23-171 127-289 (388)
160 COG3829 RocR Transcriptional r 99.5 9.3E-13 2.4E-17 97.5 13.5 199 25-246 242-490 (560)
161 TIGR01817 nifA Nif-specific re 99.5 1.2E-13 3E-18 103.0 8.9 205 20-246 204-455 (574)
162 PRK05022 anaerobic nitric oxid 99.5 3.2E-13 8.3E-18 100.3 10.6 198 27-235 185-421 (510)
163 PRK10365 transcriptional regul 99.5 1.3E-12 3.3E-17 96.7 13.6 211 27-250 138-386 (441)
164 pfam05673 DUF815 Protein of un 99.5 8.3E-13 2.1E-17 97.8 12.5 189 20-225 20-240 (248)
165 pfam07724 AAA_2 AAA domain (Cd 99.5 1E-13 2.6E-18 103.4 6.9 103 53-163 2-125 (168)
166 KOG0726 consensus 99.5 1.7E-13 4.5E-18 102.0 8.0 149 25-186 182-359 (440)
167 PRK09087 hypothetical protein; 99.5 7.8E-13 2E-17 98.0 11.3 198 25-254 18-223 (226)
168 TIGR02640 gas_vesic_GvpN gas v 99.5 5.1E-13 1.3E-17 99.1 9.7 176 37-227 11-237 (265)
169 PRK06620 hypothetical protein; 99.4 2.3E-12 5.7E-17 95.2 12.3 194 26-251 14-214 (214)
170 TIGR02030 BchI-ChlI magnesium 99.4 1.3E-12 3.3E-17 96.7 10.4 204 27-250 3-309 (340)
171 COG2204 AtoC Response regulato 99.4 1.5E-11 3.9E-16 90.1 15.8 208 25-245 138-383 (464)
172 KOG0729 consensus 99.4 4.1E-13 1E-17 99.7 7.6 175 26-215 175-379 (435)
173 PRK11608 pspF phage shock prot 99.4 3.3E-12 8.4E-17 94.2 12.1 194 26-230 4-237 (325)
174 smart00350 MCM minichromosome 99.4 5.1E-12 1.3E-16 93.0 12.4 159 29-196 204-400 (509)
175 PRK13531 regulatory ATPase Rav 99.4 3.8E-12 9.7E-17 93.8 11.6 141 30-185 22-182 (498)
176 KOG1514 consensus 99.4 5.2E-11 1.3E-15 86.8 15.5 204 34-252 402-654 (767)
177 KOG0745 consensus 99.3 9.8E-12 2.5E-16 91.3 9.8 174 56-230 228-505 (564)
178 KOG1968 consensus 99.3 4.9E-12 1.2E-16 93.1 7.8 193 17-229 309-535 (871)
179 TIGR02880 cbbX_cfxQ CbbX prote 99.3 1.3E-11 3.2E-16 90.6 8.7 187 27-229 21-249 (284)
180 KOG0741 consensus 99.3 1.6E-12 4.2E-17 96.0 3.7 121 56-192 258-410 (744)
181 COG3604 FhlA Transcriptional r 99.2 1.4E-10 3.6E-15 84.2 10.0 190 26-233 221-456 (550)
182 PRK13406 bchD magnesium chelat 99.2 3.1E-10 8E-15 82.1 11.3 191 54-251 25-248 (584)
183 pfam00158 Sigma54_activat Sigm 99.2 5.6E-11 1.4E-15 86.6 7.4 122 30-163 1-144 (168)
184 TIGR02329 propionate_PrpR prop 99.2 5.1E-10 1.3E-14 80.8 11.6 268 21-319 311-656 (658)
185 KOG0744 consensus 99.1 1.1E-10 2.7E-15 85.0 6.7 122 57-195 180-339 (423)
186 KOG0735 consensus 99.1 3E-10 7.6E-15 82.2 8.2 219 23-251 403-646 (952)
187 pfam05621 TniB Bacterial TniB 99.1 1.8E-09 4.5E-14 77.5 11.9 199 30-248 36-284 (302)
188 COG2607 Predicted ATPase (AAA+ 99.1 2.9E-09 7.5E-14 76.1 11.8 183 24-224 56-272 (287)
189 KOG0736 consensus 99.1 7.6E-10 1.9E-14 79.7 8.8 238 26-273 399-690 (953)
190 COG5271 MDN1 AAA ATPase contai 99.1 1.2E-08 3E-13 72.4 14.8 167 56-234 890-1082(4600)
191 smart00382 AAA ATPases associa 99.1 1.2E-10 3.1E-15 84.6 4.2 115 55-179 3-143 (148)
192 COG1241 MCM2 Predicted ATPase 99.0 1.5E-09 3.7E-14 78.0 8.9 219 27-254 285-593 (682)
193 KOG2227 consensus 99.0 2E-09 5.2E-14 77.1 9.3 196 28-239 150-385 (529)
194 KOG1051 consensus 99.0 8.7E-10 2.2E-14 79.4 7.0 107 28-134 562-689 (898)
195 COG5271 MDN1 AAA ATPase contai 99.0 4.4E-09 1.1E-13 75.1 10.4 170 56-233 1545-1756(4600)
196 PRK07952 DNA replication prote 99.0 6.3E-10 1.6E-14 80.2 5.1 104 26-132 67-188 (242)
197 PRK11331 5-methylcytosine-spec 99.0 2.3E-09 5.8E-14 76.8 7.8 127 54-182 194-357 (459)
198 pfam01637 Arch_ATPase Archaeal 99.0 5.1E-09 1.3E-13 74.6 9.5 170 30-221 1-219 (223)
199 TIGR02974 phageshock_pspF psp 99.0 7E-09 1.8E-13 73.8 10.1 167 56-230 24-230 (349)
200 COG1067 LonB Predicted ATP-dep 99.0 7.1E-09 1.8E-13 73.8 9.5 233 19-253 95-399 (647)
201 KOG1808 consensus 98.9 6.4E-09 1.6E-13 74.1 9.2 194 25-228 413-644 (1856)
202 TIGR01818 ntrC nitrogen regula 98.9 4.6E-08 1.2E-12 68.8 13.0 210 26-250 133-382 (471)
203 TIGR02915 PEP_resp_reg putativ 98.9 1.7E-09 4.3E-14 77.6 5.6 196 25-245 139-384 (451)
204 KOG0478 consensus 98.9 6.9E-08 1.8E-12 67.7 12.6 145 29-184 430-614 (804)
205 PRK12377 putative replication 98.9 3.1E-09 7.9E-14 76.0 5.3 103 26-131 72-191 (248)
206 KOG0480 consensus 98.9 2.2E-08 5.5E-13 70.8 9.6 215 27-254 344-644 (764)
207 COG3284 AcoR Transcriptional a 98.9 2.6E-07 6.5E-12 64.3 14.6 169 56-244 338-548 (606)
208 KOG0741 consensus 98.8 5.9E-08 1.5E-12 68.2 10.6 93 34-126 517-629 (744)
209 PRK08116 hypothetical protein; 98.8 1.4E-08 3.7E-13 71.9 7.0 110 23-132 74-201 (262)
210 COG3267 ExeA Type II secretory 98.8 3.1E-07 7.9E-12 63.7 13.0 178 57-247 54-267 (269)
211 PHA02244 ATPase-like protein 98.8 2.2E-08 5.6E-13 70.8 6.6 117 56-182 121-260 (383)
212 PTZ00111 DNA replication licen 98.7 1.8E-07 4.5E-12 65.3 9.7 140 29-180 452-641 (916)
213 PRK08181 transposase; Validate 98.7 2.8E-08 7.1E-13 70.1 4.4 78 55-132 107-196 (269)
214 PRK06526 transposase; Provisio 98.6 2.5E-08 6.4E-13 70.4 3.9 78 55-132 99-188 (254)
215 pfam01695 IstB IstB-like ATP b 98.6 3.4E-08 8.8E-13 69.6 4.2 78 55-132 48-137 (178)
216 pfam08298 AAA_PrkA PrkA AAA do 98.6 1.1E-06 2.8E-11 60.4 11.8 57 23-79 53-110 (358)
217 KOG0482 consensus 98.6 3.9E-06 1E-10 57.0 13.9 219 28-257 342-642 (721)
218 KOG2228 consensus 98.6 7.2E-06 1.8E-10 55.4 15.2 260 33-328 33-354 (408)
219 pfam00931 NB-ARC NB-ARC domain 98.6 1.1E-05 2.9E-10 54.2 16.0 118 157-284 131-251 (285)
220 PRK06835 DNA replication prote 98.5 1.6E-07 4.1E-12 65.5 5.8 95 34-131 166-274 (330)
221 TIGR02031 BchD-ChlD magnesium 98.5 1.7E-06 4.5E-11 59.2 10.7 134 54-194 17-217 (705)
222 COG4650 RtcR Sigma54-dependent 98.5 5.9E-06 1.5E-10 55.9 13.3 210 55-275 209-481 (531)
223 TIGR02173 cyt_kin_arch cytidyl 98.5 6.8E-08 1.7E-12 67.8 3.2 28 57-84 3-30 (173)
224 PRK09183 transposase/IS protei 98.4 1.7E-07 4.3E-12 65.4 3.4 78 55-132 102-192 (258)
225 COG1484 DnaC DNA replication p 98.4 4.6E-07 1.2E-11 62.7 5.2 100 26-131 77-195 (254)
226 PRK06921 hypothetical protein; 98.4 9.2E-07 2.4E-11 60.9 6.5 25 54-78 116-140 (265)
227 KOG1051 consensus 98.4 8.2E-07 2.1E-11 61.2 5.6 179 26-230 184-407 (898)
228 COG3283 TyrR Transcriptional r 98.4 5.5E-06 1.4E-10 56.1 9.8 190 26-233 202-432 (511)
229 KOG4658 consensus 98.3 6.4E-05 1.6E-09 49.6 13.6 276 31-328 161-461 (889)
230 TIGR03499 FlhF flagellar biosy 98.1 2.8E-06 7.2E-11 57.9 3.9 20 57-76 197-217 (282)
231 KOG0477 consensus 98.1 1.3E-05 3.3E-10 53.8 7.0 157 29-192 450-645 (854)
232 PRK05574 holA DNA polymerase I 98.1 0.0001 2.6E-09 48.3 11.6 179 54-252 15-212 (336)
233 PRK08939 primosomal protein Dn 98.1 4.2E-06 1.1E-10 56.8 4.2 91 22-115 122-228 (306)
234 KOG2170 consensus 98.1 1.9E-05 4.9E-10 52.8 7.3 107 26-132 79-205 (344)
235 COG0464 SpoVK ATPases of the A 98.0 1.9E-06 4.8E-11 59.0 1.6 107 53-177 17-144 (494)
236 smart00763 AAA_PrkA PrkA AAA d 98.0 1.4E-05 3.6E-10 53.6 6.1 57 22-78 44-102 (361)
237 PRK03839 putative kinase; Prov 98.0 4.8E-06 1.2E-10 56.5 2.8 30 57-86 3-32 (180)
238 PRK05703 flhF flagellar biosyn 97.9 4.3E-06 1.1E-10 56.7 2.2 20 57-76 213-233 (412)
239 PRK00131 aroK shikimate kinase 97.9 8.1E-06 2.1E-10 55.1 3.6 32 55-86 5-36 (175)
240 pfam06309 Torsin Torsin. This 97.9 2.6E-05 6.6E-10 52.0 6.1 51 28-78 25-77 (127)
241 PRK06995 flhF flagellar biosyn 97.9 7.1E-06 1.8E-10 55.4 3.2 64 57-120 179-269 (404)
242 PRK04841 transcriptional regul 97.9 7.2E-05 1.8E-09 49.3 8.3 168 22-219 8-219 (903)
243 PRK13695 putative NTPase; Prov 97.9 3.1E-05 8E-10 51.5 6.2 24 56-79 5-28 (174)
244 COG1373 Predicted ATPase (AAA+ 97.9 0.00068 1.7E-08 43.3 13.0 116 56-190 39-161 (398)
245 pfam00910 RNA_helicase RNA hel 97.9 5.1E-06 1.3E-10 56.3 1.6 64 57-121 1-65 (105)
246 pfam07693 KAP_NTPase KAP famil 97.9 8.1E-05 2.1E-09 49.0 7.7 36 57-92 23-63 (301)
247 pfam05272 VirE Virulence-assoc 97.8 0.00039 1E-08 44.8 10.9 113 51-174 48-162 (198)
248 PRK13947 shikimate kinase; Pro 97.8 1.4E-05 3.6E-10 53.6 3.5 34 54-87 1-34 (171)
249 PRK13948 shikimate kinase; Pro 97.8 2.3E-05 6E-10 52.3 4.6 35 53-87 9-43 (182)
250 PRK05057 aroK shikimate kinase 97.8 1.8E-05 4.6E-10 53.0 3.4 33 55-87 5-37 (172)
251 PRK13946 shikimate kinase; Pro 97.8 2.7E-05 6.9E-10 51.9 4.3 32 56-87 22-53 (195)
252 pfam03266 DUF265 Protein of un 97.8 1.4E-05 3.7E-10 53.5 2.8 23 56-78 1-23 (168)
253 TIGR01448 recD_rel helicase, R 97.8 2.8E-05 7.2E-10 51.8 4.2 92 57-168 368-499 (769)
254 PRK03731 aroL shikimate kinase 97.8 2.2E-05 5.7E-10 52.4 3.5 33 55-87 3-35 (172)
255 cd00464 SK Shikimate kinase (S 97.8 2.2E-05 5.7E-10 52.4 3.4 31 56-86 1-31 (154)
256 PRK12723 flagellar biosynthesi 97.7 6.1E-05 1.6E-09 49.7 5.5 64 57-120 177-269 (388)
257 TIGR02982 heterocyst_DevA ABC 97.7 3.7E-06 9.4E-11 57.2 -0.8 49 25-76 5-53 (220)
258 COG1102 Cmk Cytidylate kinase 97.7 2E-05 5.1E-10 52.7 2.9 28 57-84 3-30 (179)
259 PRK13949 shikimate kinase; Pro 97.7 3E-05 7.6E-10 51.6 3.6 33 55-87 2-34 (169)
260 COG0703 AroK Shikimate kinase 97.7 3E-05 7.6E-10 51.6 3.6 32 55-86 3-34 (172)
261 COG1936 Predicted nucleotide k 97.7 2.5E-05 6.3E-10 52.1 2.8 29 57-86 3-31 (180)
262 PRK06585 holA DNA polymerase I 97.7 0.0019 4.8E-08 40.6 12.0 75 176-252 135-209 (343)
263 PRK00625 shikimate kinase; Pro 97.7 4.1E-05 1E-09 50.8 3.5 31 56-86 2-32 (173)
264 PRK11545 gntK gluconate kinase 97.7 4.4E-05 1.1E-09 50.6 3.6 32 54-85 7-39 (177)
265 KOG3347 consensus 97.6 3.8E-05 9.6E-10 51.0 3.1 34 53-86 6-39 (176)
266 cd01428 ADK Adenylate kinase ( 97.6 4.3E-05 1.1E-09 50.7 3.1 28 57-84 2-29 (194)
267 PTZ00088 adenylate kinase 1; P 97.6 4.8E-05 1.2E-09 50.4 3.2 30 56-85 2-31 (225)
268 PRK13764 ATPase; Provisional 97.6 9.4E-05 2.4E-09 48.6 4.5 52 18-79 230-284 (605)
269 cd02021 GntK Gluconate kinase 97.6 6.3E-05 1.6E-09 49.7 3.4 29 57-85 2-30 (150)
270 COG4088 Predicted nucleotide k 97.6 5.3E-05 1.4E-09 50.1 2.8 29 55-83 2-30 (261)
271 PRK02496 adk adenylate kinase; 97.5 6.8E-05 1.7E-09 49.4 3.1 27 57-83 4-30 (185)
272 PRK11664 ATP-dependent RNA hel 97.5 0.00016 4.1E-09 47.1 4.9 16 56-71 22-37 (812)
273 TIGR00362 DnaA chromosomal rep 97.5 0.0077 2E-07 36.9 16.4 254 26-308 152-440 (493)
274 PRK08487 DNA polymerase III su 97.5 0.0029 7.3E-08 39.5 11.2 176 51-251 13-198 (328)
275 COG1419 FlhF Flagellar GTP-bin 97.5 0.00031 8E-09 45.4 6.1 66 56-121 205-297 (407)
276 KOG0479 consensus 97.5 0.00034 8.6E-09 45.2 6.2 145 29-179 302-480 (818)
277 PRK09825 idnK D-gluconate kina 97.5 9.7E-05 2.5E-09 48.5 3.4 31 56-86 5-35 (176)
278 PRK12724 flagellar biosynthesi 97.5 7.9E-05 2E-09 49.0 2.8 64 57-121 226-315 (432)
279 PRK00279 adk adenylate kinase; 97.5 9.2E-05 2.3E-09 48.6 3.2 27 57-83 3-29 (215)
280 PRK05629 hypothetical protein; 97.5 0.0077 2E-07 36.9 13.0 174 54-251 15-202 (331)
281 COG1618 Predicted nucleotide k 97.5 0.00029 7.4E-09 45.6 5.7 24 56-79 7-30 (179)
282 pfam04851 ResIII Type III rest 97.5 0.00047 1.2E-08 44.3 6.7 61 56-121 20-80 (103)
283 COG0324 MiaA tRNA delta(2)-iso 97.5 0.00065 1.7E-08 43.4 7.4 30 56-85 5-34 (308)
284 PRK07452 DNA polymerase III su 97.5 0.0085 2.2E-07 36.6 13.1 178 55-252 2-198 (326)
285 pfam00437 GSPII_E Type II/IV s 97.4 0.00028 7.1E-09 45.7 5.2 54 24-80 112-165 (283)
286 TIGR01187 potA polyamine ABC t 97.4 9.6E-05 2.4E-09 48.5 2.5 17 60-76 2-18 (331)
287 TIGR01351 adk adenylate kinase 97.4 0.00015 3.8E-09 47.4 3.3 29 57-85 2-30 (232)
288 pfam09848 DUF2075 Uncharacteri 97.4 0.00015 3.9E-09 47.3 3.2 80 57-136 4-118 (348)
289 cd01130 VirB11-like_ATPase Typ 97.3 0.00022 5.5E-09 46.4 3.8 27 56-82 27-53 (186)
290 PRK08118 topology modulation p 97.3 0.00018 4.7E-09 46.8 3.5 31 57-87 4-34 (167)
291 PRK08154 anaerobic benzoate ca 97.3 0.00036 9.1E-09 45.0 5.0 37 54-91 133-169 (304)
292 TIGR02237 recomb_radB DNA repa 97.3 0.00013 3.3E-09 47.7 2.6 19 59-77 17-35 (223)
293 PRK07261 topology modulation p 97.3 0.0002 5E-09 46.6 3.5 31 57-87 3-33 (171)
294 TIGR00455 apsK adenylylsulfate 97.3 0.00029 7.4E-09 45.6 4.2 35 53-87 17-55 (187)
295 PRK06581 DNA polymerase III su 97.3 0.00016 4.1E-09 47.1 2.8 109 54-184 15-149 (263)
296 COG0563 Adk Adenylate kinase a 97.3 0.00023 5.8E-09 46.2 3.5 25 57-81 3-27 (178)
297 TIGR02858 spore_III_AA stage I 97.3 0.00021 5.3E-09 46.4 3.3 84 50-136 119-235 (282)
298 KOG2543 consensus 97.3 0.00097 2.5E-08 42.4 6.4 56 29-87 7-63 (438)
299 COG3854 SpoIIIAA ncharacterize 97.3 0.00022 5.6E-09 46.3 3.0 27 55-81 138-164 (308)
300 COG2842 Uncharacterized ATPase 97.3 0.0021 5.3E-08 40.4 8.0 200 20-245 64-291 (297)
301 PRK00091 miaA tRNA delta(2)-is 97.2 0.0011 2.9E-08 42.0 6.6 30 56-85 6-35 (304)
302 cd02020 CMPK Cytidine monophos 97.2 0.00026 6.7E-09 45.8 3.4 28 58-85 3-30 (147)
303 PRK10875 recD exonuclease V su 97.2 0.0007 1.8E-08 43.2 5.5 27 107-133 262-288 (607)
304 PRK13951 bifunctional shikimat 97.2 0.00027 6.9E-09 45.8 3.4 30 57-86 3-32 (488)
305 TIGR01967 DEAH_box_HrpA ATP-de 97.2 0.00023 5.8E-09 46.2 2.8 73 57-130 87-205 (1320)
306 PRK06731 flhF flagellar biosyn 97.2 0.00062 1.6E-08 43.6 4.8 25 54-78 75-99 (270)
307 TIGR00764 lon_rel ATP-dependen 97.2 0.00059 1.5E-08 43.7 4.6 108 107-215 237-361 (662)
308 KOG0481 consensus 97.2 0.0028 7.2E-08 39.6 8.0 146 29-182 332-513 (729)
309 PRK13833 conjugal transfer pro 97.2 0.00048 1.2E-08 44.3 3.9 53 23-78 116-168 (323)
310 TIGR01447 recD exodeoxyribonuc 97.1 0.00041 1.1E-08 44.6 3.4 50 107-167 351-400 (753)
311 cd01124 KaiC KaiC is a circadi 97.1 0.00073 1.9E-08 43.1 4.5 43 56-100 1-46 (187)
312 COG1855 ATPase (PilT family) [ 97.1 0.00041 1E-08 44.7 3.2 53 17-79 233-288 (604)
313 cd01129 PulE-GspE PulE/GspE Th 97.1 0.002 5E-08 40.5 6.5 51 24-80 56-106 (264)
314 PRK13900 type IV secretion sys 97.1 0.00091 2.3E-08 42.6 4.8 25 56-80 162-186 (332)
315 TIGR01313 therm_gnt_kin carboh 97.1 0.00039 1E-08 44.8 2.8 39 57-97 1-44 (175)
316 PRK13894 conjugal transfer ATP 97.1 0.00064 1.6E-08 43.5 3.9 53 23-78 121-173 (320)
317 PRK12727 flagellar biosynthesi 97.0 0.00034 8.8E-09 45.1 2.3 63 57-119 351-440 (557)
318 COG5245 DYN1 Dynein, heavy cha 97.0 0.001 2.6E-08 42.2 4.7 162 18-193 1464-1655(3164)
319 pfam00406 ADK Adenylate kinase 97.0 0.00032 8.1E-09 45.4 2.0 26 59-84 1-26 (186)
320 COG1643 HrpA HrpA-like helicas 97.0 0.0014 3.5E-08 41.5 5.2 14 56-69 67-80 (845)
321 TIGR02782 TrbB_P P-type conjug 97.0 0.0013 3.2E-08 41.7 5.0 46 26-78 114-163 (315)
322 COG0194 Gmk Guanylate kinase [ 97.0 0.00029 7.5E-09 45.6 1.5 31 56-87 6-36 (191)
323 TIGR01970 DEAH_box_HrpB ATP-de 97.0 0.0011 2.7E-08 42.1 4.4 80 55-137 18-155 (858)
324 PRK00023 cmk cytidylate kinase 96.9 0.00052 1.3E-08 44.0 2.5 29 57-85 7-35 (225)
325 pfam06144 DNA_pol3_delta DNA p 96.9 0.0042 1.1E-07 38.5 7.1 58 172-229 113-170 (172)
326 PRK04040 adenylate kinase; Pro 96.9 0.0013 3.4E-08 41.5 4.4 62 56-125 4-66 (189)
327 COG3839 MalK ABC-type sugar tr 96.9 0.00068 1.7E-08 43.3 2.8 22 56-77 31-52 (338)
328 PRK07914 hypothetical protein; 96.9 0.034 8.7E-07 32.9 14.7 176 53-251 4-192 (320)
329 COG2804 PulE Type II secretory 96.9 0.0021 5.5E-08 40.3 5.3 102 26-135 236-355 (500)
330 COG3842 PotA ABC-type spermidi 96.9 0.00074 1.9E-08 43.1 2.8 20 57-76 34-53 (352)
331 PRK04220 2-phosphoglycerate ki 96.9 0.0027 7E-08 39.6 5.7 53 27-82 68-120 (306)
332 PRK09270 frcK putative fructos 96.9 0.0018 4.5E-08 40.8 4.6 25 57-81 36-61 (230)
333 PRK10536 hypothetical protein; 96.9 0.013 3.3E-07 35.5 9.1 165 21-227 56-233 (262)
334 PRK09361 radB DNA repair and r 96.9 0.0015 3.9E-08 41.1 4.3 31 57-87 26-59 (224)
335 cd01882 BMS1 Bms1. Bms1 is an 96.8 0.0019 4.8E-08 40.6 4.7 38 52-89 36-75 (225)
336 PRK13808 adenylate kinase; Pro 96.8 0.0011 2.7E-08 42.1 3.3 29 56-84 2-30 (297)
337 PRK11889 flhF flagellar biosyn 96.8 0.00085 2.2E-08 42.7 2.6 24 54-77 241-265 (436)
338 KOG1803 consensus 96.8 0.0014 3.5E-08 41.4 3.5 25 55-79 202-227 (649)
339 CHL00026 ycf2 Ycf2 96.8 0.012 3E-07 35.7 8.2 179 56-250 1632-1876(2286)
340 PRK04328 hypothetical protein; 96.7 0.0036 9.1E-08 38.9 5.5 42 56-99 26-70 (250)
341 cd01120 RecA-like_NTPases RecA 96.7 0.0013 3.3E-08 41.6 3.2 22 57-78 2-23 (165)
342 pfam05707 Zot Zonular occluden 96.7 0.0018 4.5E-08 40.8 3.8 109 57-183 3-136 (183)
343 TIGR03167 tRNA_sel_U_synt tRNA 96.7 0.0059 1.5E-07 37.6 6.4 23 55-77 128-150 (311)
344 pfam02562 PhoH PhoH-like prote 96.7 0.0032 8.1E-08 39.2 4.9 137 22-203 2-151 (205)
345 COG1125 OpuBA ABC-type proline 96.7 0.0029 7.5E-08 39.4 4.7 21 57-77 30-50 (309)
346 PRK11784 tRNA 2-selenouridine 96.7 0.0055 1.4E-07 37.8 6.1 21 56-76 139-159 (333)
347 PRK09302 circadian clock prote 96.7 0.0015 3.9E-08 41.1 3.2 20 56-75 26-45 (501)
348 cd01394 radB RadB. The archaea 96.7 0.0025 6.4E-08 39.8 4.3 26 53-78 17-43 (218)
349 PRK05541 adenylylsulfate kinas 96.7 0.0014 3.7E-08 41.3 3.0 24 57-80 10-33 (176)
350 PRK06217 hypothetical protein; 96.7 0.0019 4.8E-08 40.6 3.6 131 55-233 2-134 (185)
351 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.7 0.0019 4.9E-08 40.5 3.6 23 57-79 29-51 (144)
352 PRK11131 ATP-dependent RNA hel 96.6 0.0025 6.3E-08 39.9 3.9 72 57-129 92-209 (1295)
353 cd01131 PilT Pilus retraction 96.6 0.0048 1.2E-07 38.1 5.3 24 57-80 4-27 (198)
354 PRK13851 type IV secretion sys 96.6 0.004 1E-07 38.6 4.8 25 56-80 164-188 (343)
355 pfam05729 NACHT NACHT domain. 96.6 0.0019 4.8E-08 40.6 3.1 22 56-77 2-23 (165)
356 PRK04182 cytidylate kinase; Pr 96.6 0.002 5E-08 40.5 3.2 29 57-85 3-31 (178)
357 PRK00300 gmk guanylate kinase; 96.5 0.0023 5.8E-08 40.1 3.3 27 57-83 10-36 (208)
358 cd03222 ABC_RNaseL_inhibitor T 96.5 0.0015 3.8E-08 41.3 2.2 22 57-78 28-49 (177)
359 COG3378 Phage associated DNA p 96.5 0.005 1.3E-07 38.0 4.8 141 26-181 200-356 (517)
360 PRK03846 adenylylsulfate kinas 96.5 0.0025 6.3E-08 39.9 3.3 33 55-87 24-60 (198)
361 COG2074 2-phosphoglycerate kin 96.5 0.006 1.5E-07 37.5 5.2 27 57-83 92-118 (299)
362 TIGR03574 selen_PSTK L-seryl-t 96.5 0.0022 5.6E-08 40.2 3.0 22 57-78 2-23 (249)
363 cd03115 SRP The signal recogni 96.5 0.0023 5.9E-08 40.1 3.0 22 57-78 3-24 (173)
364 COG1466 HolA DNA polymerase II 96.5 0.052 1.3E-06 31.8 9.9 74 176-252 133-206 (334)
365 pfam05970 DUF889 PIF1 helicase 96.5 0.0019 4.9E-08 40.5 2.6 69 61-129 1-98 (418)
366 pfam01583 APS_kinase Adenylyls 96.4 0.0025 6.3E-08 39.9 3.0 23 57-79 5-27 (157)
367 COG4178 ABC-type uncharacteriz 96.4 0.0024 6.2E-08 39.9 2.9 22 56-77 421-442 (604)
368 pfam03969 AFG1_ATPase AFG1-lik 96.4 0.0063 1.6E-07 37.4 4.9 28 53-80 60-87 (361)
369 TIGR00972 3a0107s01c2 phosphat 96.4 0.0018 4.7E-08 40.7 2.2 45 25-76 5-49 (248)
370 TIGR02142 modC_ABC molybdate A 96.4 0.0018 4.7E-08 40.7 2.1 19 59-77 28-46 (361)
371 pfam00485 PRK Phosphoribulokin 96.4 0.003 7.7E-08 39.3 3.2 26 57-82 2-27 (196)
372 pfam06414 Zeta_toxin Zeta toxi 96.4 0.004 1E-07 38.6 3.8 35 53-87 11-46 (191)
373 PRK11432 fbpC ferric transport 96.4 0.0022 5.7E-08 40.1 2.5 21 57-77 35-55 (351)
374 cd02030 NDUO42 NADH:Ubiquinone 96.4 0.0033 8.5E-08 39.1 3.3 27 57-83 2-28 (219)
375 COG0467 RAD55 RecA-superfamily 96.3 0.0054 1.4E-07 37.8 4.3 43 56-100 25-70 (260)
376 PRK12339 2-phosphoglycerate ki 96.3 0.0038 9.7E-08 38.7 3.5 27 57-83 6-32 (197)
377 KOG3354 consensus 96.3 0.0035 8.9E-08 39.0 3.2 30 56-85 14-43 (191)
378 TIGR03258 PhnT 2-aminoethylpho 96.3 0.0027 6.9E-08 39.6 2.7 22 57-78 34-55 (362)
379 TIGR03265 PhnT2 putative 2-ami 96.3 0.0027 6.9E-08 39.7 2.7 21 57-77 33-53 (353)
380 cd02027 APSK Adenosine 5'-phos 96.3 0.0032 8.2E-08 39.2 3.0 23 57-79 2-24 (149)
381 cd03294 ABC_Pro_Gly_Bertaine T 96.3 0.0026 6.7E-08 39.7 2.6 22 57-78 53-74 (269)
382 cd00071 GMPK Guanosine monopho 96.3 0.0036 9.2E-08 38.9 3.3 27 57-83 2-28 (137)
383 pfam01057 Parvo_NS1 Parvovirus 96.3 0.0084 2.1E-07 36.6 5.0 26 55-80 114-139 (271)
384 TIGR02533 type_II_gspE general 96.3 0.0084 2.1E-07 36.6 5.0 94 26-127 223-339 (495)
385 PRK11160 cysteine/glutathione 96.3 0.0052 1.3E-07 37.9 3.8 25 56-80 369-393 (575)
386 cd03301 ABC_MalK_N The N-termi 96.3 0.0033 8.5E-08 39.1 2.8 22 57-78 29-50 (213)
387 pfam00448 SRP54 SRP54-type pro 96.2 0.0041 1.1E-07 38.5 3.2 20 57-76 4-23 (196)
388 TIGR03263 guanyl_kin guanylate 96.2 0.0041 1E-07 38.6 3.1 22 57-78 4-25 (180)
389 TIGR02868 CydC ABC transporter 96.2 0.0039 1E-07 38.7 3.0 40 34-80 374-413 (566)
390 cd01123 Rad51_DMC1_radA Rad51_ 96.2 0.006 1.5E-07 37.5 3.9 25 53-77 17-42 (235)
391 COG1197 Mfd Transcription-repa 96.2 0.043 1.1E-06 32.3 8.2 150 27-194 593-798 (1139)
392 PRK10646 putative ATPase; Prov 96.2 0.016 4.1E-07 34.9 6.0 34 56-90 30-63 (153)
393 TIGR03415 ABC_choXWV_ATP choli 96.2 0.0036 9.1E-08 38.9 2.7 21 57-77 53-73 (382)
394 PRK10689 transcription-repair 96.2 0.034 8.6E-07 32.9 7.6 114 27-149 599-765 (1148)
395 KOG0060 consensus 96.2 0.0037 9.5E-08 38.8 2.8 21 56-76 463-483 (659)
396 pfam00625 Guanylate_kin Guanyl 96.2 0.0052 1.3E-07 37.9 3.5 27 57-83 4-30 (182)
397 PRK13477 bifunctional pantoate 96.2 0.0035 8.8E-08 39.0 2.5 29 57-85 287-315 (512)
398 TIGR00631 uvrb excinuclease AB 96.2 0.0078 2E-07 36.9 4.3 43 32-81 13-56 (667)
399 pfam02367 UPF0079 Uncharacteri 96.2 0.0064 1.6E-07 37.4 3.8 33 57-90 18-50 (123)
400 TIGR03575 selen_PSTK_euk L-ser 96.1 0.0036 9.1E-08 38.9 2.5 22 57-78 2-23 (340)
401 cd03296 ABC_CysA_sulfate_impor 96.1 0.0039 9.9E-08 38.7 2.7 22 57-78 31-52 (239)
402 CHL00178 consensus 96.1 0.049 1.3E-06 31.9 8.3 31 56-86 1460-1490(2133)
403 cd03295 ABC_OpuCA_Osmoprotecti 96.1 0.0041 1E-07 38.6 2.7 23 57-79 30-52 (242)
404 TIGR02528 EutP ethanolamine ut 96.1 0.0022 5.6E-08 40.2 1.3 39 57-96 3-47 (144)
405 cd02023 UMPK Uridine monophosp 96.1 0.0053 1.4E-07 37.9 3.2 24 57-80 2-25 (198)
406 PRK09302 circadian clock prote 96.1 0.0035 8.8E-08 39.0 2.3 22 56-77 268-289 (501)
407 PRK00889 adenylylsulfate kinas 96.1 0.005 1.3E-07 38.0 3.0 23 57-79 7-29 (175)
408 COG1124 DppF ABC-type dipeptid 96.1 0.0036 9.2E-08 38.9 2.3 21 57-77 36-56 (252)
409 PRK10436 hypothetical protein; 96.1 0.022 5.5E-07 34.1 6.3 105 24-136 191-313 (461)
410 COG1116 TauB ABC-type nitrate/ 96.1 0.0046 1.2E-07 38.3 2.8 22 57-78 32-53 (248)
411 cd03300 ABC_PotA_N PotA is an 96.1 0.0045 1.1E-07 38.3 2.8 21 57-77 29-49 (232)
412 PRK06696 uridine kinase; Valid 96.1 0.018 4.5E-07 34.7 5.8 29 58-86 30-61 (227)
413 pfam06745 KaiC KaiC. This fami 96.1 0.0053 1.3E-07 37.9 3.1 43 56-100 21-67 (231)
414 KOG0922 consensus 96.1 0.0024 6.2E-08 39.9 1.3 71 56-127 68-184 (674)
415 pfam01745 IPT Isopentenyl tran 96.1 0.0058 1.5E-07 37.6 3.2 29 57-85 4-32 (232)
416 COG0283 Cmk Cytidylate kinase 96.0 0.0042 1.1E-07 38.5 2.5 29 57-85 7-35 (222)
417 cd03299 ABC_ModC_like Archeal 96.0 0.0046 1.2E-07 38.2 2.7 22 57-78 28-49 (235)
418 COG3265 GntK Gluconate kinase 96.0 0.0042 1.1E-07 38.5 2.5 35 61-97 2-36 (161)
419 cd01393 recA_like RecA is a b 96.0 0.012 3E-07 35.7 4.7 27 51-77 15-42 (226)
420 PRK06762 hypothetical protein; 96.0 0.0075 1.9E-07 36.9 3.7 31 57-87 5-35 (166)
421 PRK09518 bifunctional cytidyla 96.0 0.0042 1.1E-07 38.5 2.4 28 58-85 8-35 (714)
422 PRK11144 modC molybdate transp 96.0 0.0042 1.1E-07 38.5 2.3 22 57-78 27-48 (352)
423 TIGR00017 cmk cytidylate kinas 96.0 0.0043 1.1E-07 38.4 2.3 29 57-85 5-33 (223)
424 COG5192 BMS1 GTP-binding prote 96.0 0.0062 1.6E-07 37.4 3.2 20 59-78 74-93 (1077)
425 cd03297 ABC_ModC_molybdenum_tr 96.0 0.0041 1.1E-07 38.5 2.2 21 57-77 26-46 (214)
426 TIGR01186 proV glycine betaine 96.0 0.0049 1.3E-07 38.1 2.6 20 57-76 22-41 (372)
427 PRK09452 potA putrescine/sperm 96.0 0.0052 1.3E-07 37.9 2.7 22 57-78 46-67 (378)
428 PRK13768 GTPase; Provisional 96.0 0.0062 1.6E-07 37.5 3.0 30 57-86 5-37 (253)
429 cd03229 ABC_Class3 This class 96.0 0.0055 1.4E-07 37.8 2.8 22 57-78 29-50 (178)
430 cd02028 UMPK_like Uridine mono 96.0 0.0061 1.6E-07 37.5 3.0 23 58-80 3-25 (179)
431 PRK11650 ugpC glycerol-3-phosp 95.9 0.0054 1.4E-07 37.8 2.6 22 57-78 33-54 (358)
432 COG2019 AdkA Archaeal adenylat 95.9 0.013 3.2E-07 35.6 4.5 62 56-125 6-67 (189)
433 TIGR03608 L_ocin_972_ABC putat 95.9 0.0059 1.5E-07 37.6 2.8 21 57-77 27-47 (206)
434 PRK10851 sulfate/thiosulfate t 95.9 0.0056 1.4E-07 37.7 2.7 22 57-78 31-52 (352)
435 PRK00698 tmk thymidylate kinas 95.9 0.036 9.2E-07 32.8 6.8 24 57-80 6-29 (204)
436 PRK10070 glycine betaine trans 95.9 0.0057 1.5E-07 37.7 2.7 22 57-78 57-78 (400)
437 PRK05480 uridine kinase; Provi 95.9 0.0077 2E-07 36.9 3.3 24 58-81 10-33 (209)
438 KOG0926 consensus 95.9 0.041 1E-06 32.4 6.9 15 55-69 272-286 (1172)
439 PRK08099 nicotinamide-nucleoti 95.9 0.0086 2.2E-07 36.6 3.4 29 56-84 233-261 (411)
440 PRK11860 bifunctional 3-phosph 95.9 0.018 4.6E-07 34.6 5.1 23 59-81 447-469 (662)
441 PRK10789 putative multidrug tr 95.9 0.0099 2.5E-07 36.2 3.7 25 56-80 343-367 (569)
442 pfam01202 SKI Shikimate kinase 95.9 0.0053 1.4E-07 37.8 2.3 25 63-87 1-25 (158)
443 PRK11248 tauB taurine transpor 95.9 0.0063 1.6E-07 37.4 2.7 22 57-78 30-51 (255)
444 cd03262 ABC_HisP_GlnQ_permease 95.8 0.0066 1.7E-07 37.3 2.7 21 57-77 29-49 (213)
445 cd03255 ABC_MJ0796_Lo1CDE_FtsE 95.8 0.0064 1.6E-07 37.3 2.7 23 56-78 32-54 (218)
446 PRK10078 ribose 1,5-bisphospho 95.8 0.0082 2.1E-07 36.7 3.2 25 57-81 5-29 (184)
447 KOG0923 consensus 95.8 0.0057 1.4E-07 37.7 2.3 71 57-128 283-400 (902)
448 PRK01184 hypothetical protein; 95.8 0.0082 2.1E-07 36.7 3.2 28 57-85 4-31 (183)
449 TIGR01420 pilT_fam twitching m 95.8 0.0097 2.5E-07 36.2 3.5 40 31-80 112-153 (350)
450 pfam00006 ATP-synt_ab ATP synt 95.8 0.013 3.4E-07 35.4 4.2 27 57-83 18-44 (213)
451 pfam01443 Viral_helicase1 Vira 95.8 0.0037 9.6E-08 38.8 1.3 70 57-126 1-80 (226)
452 PRK11000 maltose/maltodextrin 95.8 0.0068 1.7E-07 37.2 2.7 22 57-78 32-53 (369)
453 COG4626 Phage terminase-like p 95.8 0.024 6.2E-07 33.8 5.5 98 108-222 187-301 (546)
454 COG1123 ATPase components of v 95.8 0.006 1.5E-07 37.5 2.4 30 58-87 39-68 (539)
455 cd02025 PanK Pantothenate kina 95.8 0.0069 1.8E-07 37.2 2.6 22 59-80 4-25 (220)
456 cd01919 PEPCK Phosphoenolpyruv 95.8 0.0049 1.2E-07 38.1 1.8 19 56-74 219-237 (515)
457 COG1428 Deoxynucleoside kinase 95.8 0.0092 2.4E-07 36.4 3.2 26 56-81 6-31 (216)
458 PRK10790 putative multidrug tr 95.7 0.011 2.8E-07 35.9 3.5 25 56-80 369-393 (593)
459 PRK12338 hypothetical protein; 95.7 0.0099 2.5E-07 36.2 3.3 27 56-82 6-32 (320)
460 PRK10247 putative ABC transpor 95.7 0.0084 2.1E-07 36.7 2.9 22 57-78 36-57 (225)
461 PRK10522 multidrug transporter 95.7 0.011 2.9E-07 35.8 3.5 24 56-79 351-374 (547)
462 COG0572 Udk Uridine kinase [Nu 95.7 0.011 2.7E-07 36.0 3.4 25 57-81 11-35 (218)
463 PRK06067 flagellar accessory p 95.7 0.015 3.8E-07 35.1 4.1 22 56-77 34-55 (241)
464 cd03261 ABC_Org_Solvent_Resist 95.7 0.0084 2.1E-07 36.7 2.8 21 57-77 29-49 (235)
465 PRK12269 bifunctional cytidyla 95.7 0.0067 1.7E-07 37.2 2.3 33 53-85 31-65 (863)
466 PRK13657 cyclic beta-1,2-gluca 95.7 0.01 2.6E-07 36.1 3.2 24 56-79 363-386 (585)
467 cd03257 ABC_NikE_OppD_transpor 95.7 0.0084 2.1E-07 36.6 2.7 22 57-78 34-55 (228)
468 cd03293 ABC_NrtD_SsuB_transpor 95.7 0.0083 2.1E-07 36.7 2.7 22 57-78 33-54 (220)
469 COG4525 TauB ABC-type taurine 95.6 0.0087 2.2E-07 36.5 2.7 23 56-78 33-55 (259)
470 PRK10419 nikE nickel transport 95.6 0.007 1.8E-07 37.1 2.2 21 57-77 41-61 (266)
471 TIGR00630 uvra excinuclease AB 95.6 0.016 4.2E-07 34.9 4.1 19 57-75 25-45 (956)
472 cd01121 Sms Sms (bacterial rad 95.6 0.0099 2.5E-07 36.2 2.9 65 22-87 48-118 (372)
473 PRK13540 cytochrome c biogenes 95.6 0.0096 2.5E-07 36.3 2.8 22 57-78 30-51 (200)
474 cd03298 ABC_ThiQ_thiamine_tran 95.6 0.0077 2E-07 36.9 2.3 22 57-78 27-48 (211)
475 cd01673 dNK Deoxyribonucleosid 95.6 0.012 2.9E-07 35.8 3.2 27 57-83 2-28 (193)
476 COG2909 MalT ATP-dependent tra 95.6 0.033 8.5E-07 33.0 5.5 47 21-75 12-58 (894)
477 PRK11174 cysteine/glutathione 95.6 0.014 3.5E-07 35.3 3.5 22 56-77 378-399 (588)
478 cd03231 ABC_CcmA_heme_exporter 95.6 0.01 2.6E-07 36.1 2.9 22 57-78 29-50 (201)
479 cd03292 ABC_FtsE_transporter F 95.6 0.0097 2.5E-07 36.2 2.7 21 57-77 30-50 (214)
480 PRK10418 nikD nickel transport 95.5 0.0086 2.2E-07 36.6 2.3 33 57-89 32-64 (254)
481 PRK13539 cytochrome c biogenes 95.5 0.011 2.8E-07 36.0 2.8 22 57-78 31-52 (206)
482 COG0802 Predicted ATPase or ki 95.5 0.045 1.1E-06 32.2 6.0 35 56-91 27-61 (149)
483 TIGR00954 3a01203 Peroxysomal 95.5 0.01 2.6E-07 36.1 2.6 22 56-77 558-579 (788)
484 CHL00179 consensus 95.5 0.078 2E-06 30.7 7.1 30 56-85 1602-1631(2262)
485 pfam03205 MobB Molybdopterin g 95.5 0.014 3.5E-07 35.4 3.2 23 56-78 2-24 (122)
486 PRK10744 phosphate transporter 95.5 0.01 2.6E-07 36.1 2.5 47 26-79 15-61 (257)
487 pfam10236 DAP3 Mitochondrial r 95.4 0.019 4.8E-07 34.5 3.8 32 55-86 24-56 (274)
488 TIGR01618 phage_P_loop phage n 95.4 0.003 7.6E-08 39.4 -0.2 21 55-75 14-34 (229)
489 pfam08423 Rad51 Rad51. Rad51 i 95.4 0.0099 2.5E-07 36.2 2.4 26 51-76 39-65 (261)
490 PRK05506 bifunctional sulfate 95.4 0.017 4.2E-07 34.8 3.5 31 57-87 446-479 (613)
491 PHA00350 putative assembly pro 95.4 0.0079 2E-07 36.8 1.8 15 58-72 5-19 (402)
492 cd03234 ABCG_White The White s 95.4 0.012 3.1E-07 35.6 2.8 22 57-78 36-57 (226)
493 COG0645 Predicted kinase [Gene 95.4 0.014 3.5E-07 35.3 3.0 27 57-83 4-30 (170)
494 PRK13889 conjugal transfer rel 95.4 0.016 4.1E-07 34.9 3.3 76 57-132 365-460 (992)
495 TIGR01842 type_I_sec_PrtD type 95.4 0.0074 1.9E-07 37.0 1.6 35 35-76 344-378 (556)
496 COG1118 CysA ABC-type sulfate/ 95.4 0.01 2.6E-07 36.1 2.3 22 57-78 31-52 (345)
497 TIGR00750 lao LAO/AO transport 95.4 0.013 3.4E-07 35.4 2.8 23 56-78 39-62 (333)
498 cd02019 NK Nucleoside/nucleoti 95.3 0.014 3.6E-07 35.3 2.9 22 57-78 2-23 (69)
499 TIGR01193 bacteriocin_ABC ABC- 95.3 0.012 3.1E-07 35.6 2.6 23 56-78 502-524 (710)
500 PRK13648 cbiO cobalt transport 95.3 0.013 3.4E-07 35.4 2.7 22 57-78 38-59 (269)
No 1
>TIGR00635 ruvB Holliday junction DNA helicase RuvB; InterPro: IPR004605 All proteins in this family for which functions are known are 5'-3' DNA helicases that, as part of a complex with RuvA homologs serve as a 5'-3' Holliday junction helicase. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.; GO: 0003677 DNA binding, 0005524 ATP binding, 0009378 Holliday junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=100.00 E-value=0 Score=743.38 Aligned_cols=305 Identities=60% Similarity=0.988 Sum_probs=303.1
Q ss_pred CCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 98778239799999999999986614677670799737885577899999986189853125764433467666666410
Q gi|254780552|r 25 RTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLE 104 (334)
Q Consensus 25 ~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~~~~~~~~dl~~~~~~~~ 104 (334)
++|+|||||+++|+.|+++|+|+|.|++.++|+|||||||.||||||+|||+||+++++.+|||+++|++|+.+++++++
T Consensus 1 ~~L~eFiGQ~~vk~~L~l~I~AAk~R~e~LDH~LL~GPPGLGKTTLA~IiA~Emg~~l~iTsGP~L~kPgDlaaiLt~L~ 80 (305)
T TIGR00635 1 KLLAEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEKPGDLAAILTNLE 80 (305)
T ss_pred CCCHHCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCC
T ss_conf 98011058288999999999999824897341663175687467899999998389326740675547578999997056
Q ss_pred CCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCCCCCCHHHHHCCCCEEECCCCC
Q ss_conf 16378887576169899999999863475100256787652000466740055204554335545442012067326454
Q gi|254780552|r 105 DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184 (334)
Q Consensus 105 ~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~~~l~~~l~sR~~~~~~~~~~~ 184 (334)
+++|||||||||++|.++|.|||+||||++||++|+||+|+++++++||||||||||++++|++||+|||+++.+|+||+
T Consensus 81 ~gDVLFIDEIHRL~p~~EE~LYpAMEDF~lDi~IG~Gp~Ar~v~ldLpPFTLvGATTR~G~lt~PLrdRFG~~~rl~fY~ 160 (305)
T TIGR00635 81 EGDVLFIDEIHRLSPAIEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTSPLRDRFGIILRLEFYT 160 (305)
T ss_pred CCCEEECCHHHHCCHHHHHHCCCCCCCEEEEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCC
T ss_conf 89631012565048334531053001217877871289852576068694420000347741031334544745402689
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 79999987776541210111111123320221015678877754333455415886427787876542100000046776
Q gi|254780552|r 185 IEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDKMGFDQLD 264 (334)
Q Consensus 185 ~~el~~il~~~~~~~~i~~~~~al~~ia~~s~Gd~R~AlnlLe~v~d~a~~~~~~~i~~~~~~~~l~~~~id~~Gl~~~d 264 (334)
++||.+|+.|.+..+++++++++..+||++|+|+||.|+|||+||||||++.+.+.||.++++++|..+.||+.|||+.|
T Consensus 161 ~~EL~~Iv~R~A~~L~~ei~~~~a~~IArrSRGTPRIAnRLLRRVRDfA~V~~~~~I~~~i~~~AL~~L~iD~~GLd~~D 240 (305)
T TIGR00635 161 PEELAEIVSRSAGLLNIEIEQEAALEIARRSRGTPRIANRLLRRVRDFAQVRGQGVITRDIALKALEMLDIDELGLDEID 240 (305)
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 87899998753344143007789999987547863788877676644888726787388999999886253330057998
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
Q ss_conf 88999999751866206999999828745674678999999834305871899999988866488
Q gi|254780552|r 265 LRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 (334)
Q Consensus 265 ~~~L~~l~~~~~~g~~~~~~isA~~ks~RgS~~daa~~yL~r~g~~~~~prgRrL~~~a~EdiGl 329 (334)
++||+++.++|+|||+|+++||+.+++.+.|+||+.||||+|.|++.+|||||..|..||+|+|+
T Consensus 241 ~~~L~~li~~f~GGPVGl~tlA~a~GEd~~TiEdv~EPyLl~~G~~~RT~RGRiaT~~aY~HL~~ 305 (305)
T TIGR00635 241 RKLLSVLIEKFQGGPVGLDTLAAALGEDADTIEDVYEPYLLQQGFLQRTPRGRIATELAYEHLGL 305 (305)
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHCC
T ss_conf 99999999862898523898998855751114203465899876650067865120578874159
No 2
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=100.00 E-value=0 Score=674.09 Aligned_cols=326 Identities=64% Similarity=1.031 Sum_probs=317.4
Q ss_pred HHCCCCCCCCCCHHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 10268444412057875078987782397999999999999866146776707997378855778999999861898531
Q gi|254780552|r 5 EGLLSRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRS 84 (334)
Q Consensus 5 ~~~~~~~~~~~~~~~~~lRP~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~ 84 (334)
++++++....++.....|||++|+|||||+++++.|+++++|++.|+++++|+|||||||+||||+|++||+|++++|+.
T Consensus 2 ~~~~~~~~~~~~~~~~~lRP~~l~efiGQ~~i~~~L~v~i~Aak~r~e~ldH~Ll~GPPGlGKTTLA~iiA~E~~~~~~~ 81 (328)
T PRK00080 2 ERLISPEVSPEDEFERSLRPKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRI 81 (328)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCEE
T ss_conf 76558888873000005598857663595999999999999999649998805765889988999999999986888156
Q ss_pred CCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCCC
Q ss_conf 25764433467666666410163788875761698999999998634751002567876520004667400552045543
Q gi|254780552|r 85 TSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVG 164 (334)
Q Consensus 85 ~s~~~~~~~~dl~~~~~~~~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~~ 164 (334)
+|||++++++|++++++++++++|||||||||+|+.++|.|||+||||+++|++++||+|+++++++||||||||||+.+
T Consensus 82 tsGP~lek~~DL~~iLt~l~~~dvLFIDEIHRl~~~vEE~LY~AMEDf~iDi~iG~g~~Ar~~~i~L~pFTLIGATTr~g 161 (328)
T PRK00080 82 TSGPALEKAGDLAALLTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRAG 161 (328)
T ss_pred CCCCCCCCHHHHHHHHHHCCCCCEEEEHHHHHCCHHHHHHHHHHHHHCEEEEEECCCCCCEEEECCCCCEEEEECCCCCC
T ss_conf 24500167478999996088787676506532488899885798775234578647865324555899834740136766
Q ss_pred CCCHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHH
Q ss_conf 35545442012067326454799999877765412101111111233202210156788777543334554158864277
Q gi|254780552|r 165 LLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244 (334)
Q Consensus 165 ~l~~~l~sR~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~Gd~R~AlnlLe~v~d~a~~~~~~~i~~~ 244 (334)
+|+.||||||+++++|+||+.+||.+|++|.++.++++++++++.+||++|+|+||.|+|+|+|++|||++++++.|+.+
T Consensus 162 ~Ls~PLrdRFGi~~~l~~Y~~eeL~~Ii~rsa~~l~i~i~~~~~~eIA~rSRGTPRiAnrLLrRvrDfa~v~~~~~I~~~ 241 (328)
T PRK00080 162 LLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGIEIDEEGALEIARRSRGTPRIANRLLRRVRDFAQVKGDGIITRE 241 (328)
T ss_pred CCCHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCHH
T ss_conf 57767897579336634589999999999999983988789999999986389839999999999999998379965999
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 87876542100000046776889999997518662069999998287456746789999998343058718999999888
Q gi|254780552|r 245 IADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAW 324 (334)
Q Consensus 245 ~~~~~l~~~~id~~Gl~~~d~~~L~~l~~~~~~g~~~~~~isA~~ks~RgS~~daa~~yL~r~g~~~~~prgRrL~~~a~ 324 (334)
++++++..++||+.|||..|++||+++.++|+|||+|+++|||.+++.++|++|++||||+|.|++.+|||||++|..||
T Consensus 242 ~~~~aL~~l~ID~~GLd~~Dr~~L~~l~~~f~GgPVGl~tLAa~lge~~~TIEdv~EPyLiq~G~i~RTprGR~~T~~a~ 321 (328)
T PRK00080 242 IADKALDMLGVDELGLDEMDRKYLLTIIEKFGGGPVGLDTLAAALGEERDTIEDVYEPYLIQQGFIQRTPRGRVATPKAY 321 (328)
T ss_pred HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
T ss_conf 99999995698634899889999999998529977009999999779821688875189988367010885477559999
Q ss_pred HHCCCC
Q ss_conf 664888
Q gi|254780552|r 325 QHLGID 330 (334)
Q Consensus 325 EdiGla 330 (334)
+|+|+.
T Consensus 322 ~hLg~~ 327 (328)
T PRK00080 322 EHLGLN 327 (328)
T ss_pred HHCCCC
T ss_conf 974999
No 3
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=100.00 E-value=0 Score=661.35 Aligned_cols=330 Identities=60% Similarity=1.001 Sum_probs=319.9
Q ss_pred HHCCCCCCCCCC-HHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 102684444120-5787507898778239799999999999986614677670799737885577899999986189853
Q gi|254780552|r 5 EGLLSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFR 83 (334)
Q Consensus 5 ~~~~~~~~~~~~-~~~~~lRP~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~~~ 83 (334)
++++++....++ .....+||++|+|||||+++++.++++|+|++.|++.++|+|||||||+||||+|+|||+|||++++
T Consensus 2 ~r~i~~~~~~~~~~~e~~lRP~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k 81 (332)
T COG2255 2 DRIISPEKQEEEMKIERSLRPKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLK 81 (332)
T ss_pred CCCCCCCCCCHHHHHHHCCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEE
T ss_conf 75347422540444430358654888518399999999999999844987674786479987688899999998567737
Q ss_pred CCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCC
Q ss_conf 12576443346766666641016378887576169899999999863475100256787652000466740055204554
Q gi|254780552|r 84 STSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163 (334)
Q Consensus 84 ~~s~~~~~~~~dl~~~~~~~~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~ 163 (334)
.+|||++++++|+.++++++++++|||||||||+++.++|.|||+||||++||++++||+|+++++++||||||||||+.
T Consensus 82 ~tsGp~leK~gDlaaiLt~Le~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr~ 161 (332)
T COG2255 82 ITSGPALEKPGDLAAILTNLEEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTRA 161 (332)
T ss_pred ECCCCCCCCHHHHHHHHHCCCCCCEEEEEHHHHCCHHHHHHHHHHHHHEEEEEEECCCCCCCEEECCCCCEEEEEECCCC
T ss_conf 63662015726599998639867767772553147428989646753105778972487553476379981375101346
Q ss_pred CCCCHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCH
Q ss_conf 33554544201206732645479999987776541210111111123320221015678877754333455415886427
Q gi|254780552|r 164 GLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243 (334)
Q Consensus 164 ~~l~~~l~sR~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~Gd~R~AlnlLe~v~d~a~~~~~~~i~~ 243 (334)
++|++||||||+++.+++||+.+||.+|+.|.++.+++++++++..+||++|+|+||.|+++|+|++|||++++.+.|+.
T Consensus 162 G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGTPRIAnRLLrRVRDfa~V~~~~~I~~ 241 (332)
T COG2255 162 GMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRGTPRIANRLLRRVRDFAQVKGDGDIDR 241 (332)
T ss_pred CCCCCHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCH
T ss_conf 64563368862860454058889999999988887387768579999998636993899999999999999816882048
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 78787654210000004677688999999751866206999999828745674678999999834305871899999988
Q gi|254780552|r 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIA 323 (334)
Q Consensus 244 ~~~~~~l~~~~id~~Gl~~~d~~~L~~l~~~~~~g~~~~~~isA~~ks~RgS~~daa~~yL~r~g~~~~~prgRrL~~~a 323 (334)
+.+++++..+++|+.|+|..|++||+++.++|+|||+|+++||+.++..|.|++|+.||||++.|++.+|||||.+|..|
T Consensus 242 ~ia~~aL~~L~Vd~~GLd~~D~k~L~~li~~f~GgPVGl~tia~~lge~~~TiEdv~EPyLiq~gfi~RTpRGR~aT~~a 321 (332)
T COG2255 242 DIADKALKMLDVDELGLDEIDRKYLRALIEQFGGGPVGLDTIAAALGEDRDTIEDVIEPYLIQQGFIQRTPRGRIATAKA 321 (332)
T ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEECHHH
T ss_conf 99999998729640255689999999999973799823999999965767778888748998833565188853410999
Q ss_pred HHHCCCCCCCC
Q ss_conf 86648888899
Q gi|254780552|r 324 WQHLGIDIPHR 334 (334)
Q Consensus 324 ~EdiGla~P~~ 334 (334)
|+|+|+-.|.+
T Consensus 322 y~hl~~~~~~~ 332 (332)
T COG2255 322 YEHLGLPPPEK 332 (332)
T ss_pred HHHHCCCCCCC
T ss_conf 99846688899
No 4
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=100.00 E-value=0 Score=553.79 Aligned_cols=279 Identities=29% Similarity=0.365 Sum_probs=238.6
Q ss_pred CCCHHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCH
Q ss_conf 12057875078987782397999999999999866146776707997378855778999999861898531257644334
Q gi|254780552|r 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA 93 (334)
Q Consensus 14 ~~~~~~~~lRP~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~~~~~~~ 93 (334)
..-+..++|||++|+|||||+|++++.+.+..+.. +..+++|||||||||||||+|++||+.++..|..+|| +..++
T Consensus 14 ~~aPLA~rmRP~~Lde~vGQ~hllg~g~~Lrr~i~--~~~~~S~Il~GPPGtGKTTLA~iIA~~t~~~F~~lsA-v~sgv 90 (726)
T PRK13341 14 SEAPLADRLRPRTLEEFVGQDHILGEGRLLRRAIK--ADRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNA-VLAGV 90 (726)
T ss_pred CCCCCHHHHCCCCHHHHCCCHHHCCCCCHHHHHHH--CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEC-CCCCH
T ss_conf 26985686299987773595754289828999997--6999827888979999999999998874886799856-20377
Q ss_pred HHHHHHHHHHH-------CCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCCCC-
Q ss_conf 67666666410-------1637888757616989999999986347510025678765200046674005520455433-
Q gi|254780552|r 94 GDLAALLTNLE-------DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL- 165 (334)
Q Consensus 94 ~dl~~~~~~~~-------~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~~~- 165 (334)
+|++.++..++ .++||||||||||||.|||+|||++|+|.| +||||||++|.
T Consensus 91 kdlr~ii~~A~~~~~~~g~~tILFIDEIHRfNK~QQD~LLp~vE~G~i--------------------~LIGATTENP~F 150 (726)
T PRK13341 91 KDLRAEVDAAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVENGTV--------------------TLIGATTENPYF 150 (726)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEECHHHCCHHHHHHHHHHHCCCEE--------------------EEEEECCCCCCE
T ss_conf 999999999999987459965999862542588789987888606838--------------------999704789743
Q ss_pred -CCHHHHHCCCCEEECCCCCHHHHHHHHHHHHHH-------CCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf -554544201206732645479999987776541-------210111111123320221015678877754333455415
Q gi|254780552|r 166 -LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKL-------TGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237 (334)
Q Consensus 166 -l~~~l~sR~~~~~~~~~~~~~el~~il~~~~~~-------~~i~~~~~al~~ia~~s~Gd~R~AlnlLe~v~d~a~~~~ 237 (334)
|++||+|||. ++.|++++.+++.++++|+... .++.++++|+..|++.|+||+|.|+|.||.+...+...+
T Consensus 151 ~vn~ALlSR~~-vf~L~~L~~~dl~~il~rAl~d~~~g~~~~~i~i~~~al~~l~~~s~GDaR~aLN~LElav~~~~~~~ 229 (726)
T PRK13341 151 EVNKALVSRSR-LFRLKSLEDEDLHQLLKRALQDKERGYGDRNIDLEPEAEKHLVDVANGDARSLLNALELAVESTPPDE 229 (726)
T ss_pred EECHHHHHHCE-EEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 64298883234-66743899999999999998767432566787759899999999759739999999999997074576
Q ss_pred CC--CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHH
Q ss_conf 88--6427787876542100000046776889999997518662069999998287456746789999998343058718
Q gi|254780552|r 238 AK--TITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR 315 (334)
Q Consensus 238 ~~--~i~~~~~~~~l~~~~id~~Gl~~~d~~~L~~l~~~~~~g~~~~~~isA~~ks~RgS~~daa~~yL~r~g~~~~~pr 315 (334)
.+ .|+...++++++.. ...++++||.|||.|||||||+||||||||+|||+||..+|+||+
T Consensus 230 ~~~~~i~~~~~~~~~~~~-----------------~~~YDk~GD~HYd~iSAfiKSiRGSDpDAALywLARMLeaGEDP~ 292 (726)
T PRK13341 230 DGVIHINLAIAEESIQQR-----------------AVLYDKEGDAHFDTISAFIKSLRGSDPDAALYWLARMVEAGEDPR 292 (726)
T ss_pred CCCEEECHHHHHHHHHHH-----------------HHCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHH
T ss_conf 883443599999998566-----------------605687751788999999998654896789999999997599889
Q ss_pred --HHHHHHHHHHHCCCCCCC
Q ss_conf --999999888664888889
Q gi|254780552|r 316 --GRLLMPIAWQHLGIDIPH 333 (334)
Q Consensus 316 --gRrL~~~a~EdiGla~P~ 333 (334)
+|||+++||||||||||+
T Consensus 293 fIaRRLii~AsEDIGlAdP~ 312 (726)
T PRK13341 293 FIFRRMLIAASEDVGLADPQ 312 (726)
T ss_pred HHHHHHHHHHHHHCCCCCHH
T ss_conf 99999999998402366847
No 5
>PRK13342 recombination factor protein RarA; Reviewed
Probab=100.00 E-value=0 Score=551.77 Aligned_cols=271 Identities=33% Similarity=0.403 Sum_probs=238.1
Q ss_pred HHHHHCCCCCHHHHCCHHHHHHH---HHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCH
Q ss_conf 57875078987782397999999---999999866146776707997378855778999999861898531257644334
Q gi|254780552|r 17 ADISLLRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA 93 (334)
Q Consensus 17 ~~~~~lRP~~l~dviGQ~~~~~~---l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~~~~~~~ 93 (334)
+..+++||++|+|||||+|+++. |+.+++. ..++|+||||||||||||+|++||++++++|.++|| +..++
T Consensus 2 PLAer~RP~~lde~vGQ~hllg~~~~L~~~i~~-----~~~~s~Il~GPPG~GKTTlA~iiA~~~~~~f~~lnA-~~~gv 75 (417)
T PRK13342 2 PLAERMRPKTLDEVVGQEHLLGPGKPLRRMIEA-----GRLSSMILWGPPGTGKTTLARIIAGATDAEFEALSA-VTSGV 75 (417)
T ss_pred CCHHHHCCCCHHHHCCCHHHHCCCHHHHHHHHC-----CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEC-CCCCH
T ss_conf 871644999888857987760897199999976-----999759988969998999999999986898899614-10388
Q ss_pred HHHHHHHHHHH-----CCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCCC--CC
Q ss_conf 67666666410-----163788875761698999999998634751002567876520004667400552045543--35
Q gi|254780552|r 94 GDLAALLTNLE-----DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVG--LL 166 (334)
Q Consensus 94 ~dl~~~~~~~~-----~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~~--~l 166 (334)
+|++.++..++ .++||||||||||||.|||+|||+||+|.+ +|||||||+| .|
T Consensus 76 ~dir~ii~~a~~~~~~~~tilfiDEIHRfnK~QQD~LLp~vE~g~i--------------------iLIgATTENP~f~i 135 (417)
T PRK13342 76 KDLREVIEEAKQSRLGRRTILFIDEIHRFNKAQQDALLPHVEDGTI--------------------TLIGATTENPSFEV 135 (417)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEECHHHCCHHHHHHHHHHHHCCCE--------------------EEEEECCCCCHHHC
T ss_conf 9999999998863148965999978200588999999875112656--------------------99974157922534
Q ss_pred CHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 545442012067326454799999877765412-----101111111233202210156788777543334554158864
Q gi|254780552|r 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT-----GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241 (334)
Q Consensus 167 ~~~l~sR~~~~~~~~~~~~~el~~il~~~~~~~-----~i~~~~~al~~ia~~s~Gd~R~AlnlLe~v~d~a~~~~~~~i 241 (334)
++||+|||. +++|++++.+++.++++|+++.+ ++.++++|+..|++.|+||+|.|||+||.+. ....+...|
T Consensus 136 n~aLlSRc~-vf~l~~L~~~di~~iL~ral~~e~~~~~~i~i~~~al~~i~~~s~GDaR~aLN~LE~a~--~~~~~~~~i 212 (417)
T PRK13342 136 NPALLSRAQ-VFELKPLSEEDLEQLLKRALEDERGLGRKLELDDEALDALARLADGDARRALNLLELAA--AAAAGGEVI 212 (417)
T ss_pred CHHHHHHHH-HEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHH--HCCCCCCCC
T ss_conf 898985657-00205899999999999999877433788776999999999814985999999999998--525899734
Q ss_pred CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHH--HHHH
Q ss_conf 27787876542100000046776889999997518662069999998287456746789999998343058718--9999
Q gi|254780552|r 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLL 319 (334)
Q Consensus 242 ~~~~~~~~l~~~~id~~Gl~~~d~~~L~~l~~~~~~g~~~~~~isA~~ks~RgS~~daa~~yL~r~g~~~~~pr--gRrL 319 (334)
|.+.+++.++... ..+++.|+.|||.|||||||+||||+|||+|||+||..+|+||+ +|||
T Consensus 213 ~~~~~~~~~~~~~-----------------~~yDk~gd~HYd~iSAf~KSiRGSDpdAAlyyLarml~~GEDp~~IaRRL 275 (417)
T PRK13342 213 TLELLEEALQRRA-----------------ARYDKDGDEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRL 275 (417)
T ss_pred CHHHHHHHHHHCC-----------------CCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 8999999984410-----------------35777863478999999998516995489999999997599979999999
Q ss_pred HHHHHHHCCCCCCC
Q ss_conf 99888664888889
Q gi|254780552|r 320 MPIAWQHLGIDIPH 333 (334)
Q Consensus 320 ~~~a~EdiGla~P~ 333 (334)
+++||||||||||+
T Consensus 276 ii~AsEDIGlAdP~ 289 (417)
T PRK13342 276 VIIASEDIGLADPN 289 (417)
T ss_pred HHHHHHHHCCCCHH
T ss_conf 99885440367878
No 6
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=100.00 E-value=0 Score=539.28 Aligned_cols=275 Identities=29% Similarity=0.352 Sum_probs=235.8
Q ss_pred CHHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHH
Q ss_conf 05787507898778239799999999999986614677670799737885577899999986189853125764433467
Q gi|254780552|r 16 DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGD 95 (334)
Q Consensus 16 ~~~~~~lRP~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~~~~~~~~d 95 (334)
++...+|||++|+|||||+|++++.++...+.. +..++||||||||||||||+|++||+++++.|..+|| +..+++|
T Consensus 12 ~PLA~rmRP~~lde~vGQ~HLlg~~~~lrr~v~--~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sA-v~~gvkd 88 (436)
T COG2256 12 MPLAERLRPKSLDEVVGQEHLLGEGKPLRRAVE--AGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSA-VTSGVKD 88 (436)
T ss_pred CCHHHHHCCCCHHHHCCHHHHHCCCCHHHHHHH--CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEECC-CCCCHHH
T ss_conf 676777097778785571866189943899996--4998605777899988889999998761776699515-2346799
Q ss_pred HHHHHHHH------HCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCCCC--CC
Q ss_conf 66666641------01637888757616989999999986347510025678765200046674005520455433--55
Q gi|254780552|r 96 LAALLTNL------EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL--LT 167 (334)
Q Consensus 96 l~~~~~~~------~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~~~--l~ 167 (334)
++.++..+ ++++||||||||||||.|||+|||+||+|.| +|||||||+|. |+
T Consensus 89 lr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE~G~i--------------------ilIGATTENPsF~ln 148 (436)
T COG2256 89 LREIIEEARKNRLLGRRTILFLDEIHRFNKAQQDALLPHVENGTI--------------------ILIGATTENPSFELN 148 (436)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEHHHHCCHHHHHHHHHHHCCCEE--------------------EEEECCCCCCCEEEC
T ss_conf 999999999987258834998722533374456551033248868--------------------999626789871403
Q ss_pred HHHHHCCCCEEECCCCCHHHHHHHHHHHHHHC--C-----CHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 45442012067326454799999877765412--1-----0111111123320221015678877754333455415886
Q gi|254780552|r 168 NPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT--G-----LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 (334)
Q Consensus 168 ~~l~sR~~~~~~~~~~~~~el~~il~~~~~~~--~-----i~~~~~al~~ia~~s~Gd~R~AlnlLe~v~d~a~~~~~~~ 240 (334)
+||+|||. ++.|++++.+|+.++++|.+..+ + +.++++|++.|++.|+||+|.|||+||.+...+.. ...
T Consensus 149 ~ALlSR~~-vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~--~~~ 225 (436)
T COG2256 149 PALLSRAR-VFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAALSAEP--DEV 225 (436)
T ss_pred HHHHHHHH-EEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCC--CCC
T ss_conf 88861104-156516998999999999986541377765566888999999986286199998899999986277--752
Q ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHH--HHH
Q ss_conf 427787876542100000046776889999997518662069999998287456746789999998343058718--999
Q gi|254780552|r 241 ITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRL 318 (334)
Q Consensus 241 i~~~~~~~~l~~~~id~~Gl~~~d~~~L~~l~~~~~~g~~~~~~isA~~ks~RgS~~daa~~yL~r~g~~~~~pr--gRr 318 (334)
++.+.++++++. ....++++||.|||+|||+|||+||||+|||+|||+||..+|+||+ +||
T Consensus 226 ~~~~~l~~~l~~-----------------~~~~~Dk~gD~hYdliSA~hKSvRGSD~dAALyylaRmi~~GeDp~yiARR 288 (436)
T COG2256 226 LILELLEEILQR-----------------RSARFDKDGDAHYDLISALHKSVRGSDPDAALYYLARMIEAGEDPLYIARR 288 (436)
T ss_pred CCHHHHHHHHHH-----------------HHHCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 479999999865-----------------520567776347899999998612688378999999999668878999999
Q ss_pred HHHHHHHHCCCCCCC
Q ss_conf 999888664888889
Q gi|254780552|r 319 LMPIAWQHLGIDIPH 333 (334)
Q Consensus 319 L~~~a~EdiGla~P~ 333 (334)
|+++||||||||||+
T Consensus 289 lv~~AsEDIGlAdP~ 303 (436)
T COG2256 289 LVRIASEDIGLADPN 303 (436)
T ss_pred HHHHHHHHCCCCCHH
T ss_conf 999987422578836
No 7
>pfam05496 RuvB_N Holliday junction DNA helicase ruvB N-terminus. The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein.
Probab=100.00 E-value=0 Score=489.77 Aligned_cols=233 Identities=63% Similarity=1.008 Sum_probs=222.8
Q ss_pred HCCCCCCCCCC-HHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 02684444120-57875078987782397999999999999866146776707997378855778999999861898531
Q gi|254780552|r 6 GLLSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRS 84 (334)
Q Consensus 6 ~~~~~~~~~~~-~~~~~lRP~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~ 84 (334)
+++++.+.+++ +....|||++|+|||||+|+++.++.++++++.+++.++|+||||||||||||+|++||++++++|..
T Consensus 1 ~~~~~~~~~~~~~~~~~lRP~~l~e~vGQehl~~~l~~~i~a~~~~~~~l~h~lf~GPPG~GKTTlAriiAk~~~~~~~~ 80 (234)
T pfam05496 1 RLVSPEAQEEEDDVERSLRPRRLDEYIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRI 80 (234)
T ss_pred CCCCCCCCCCCHHHHHCCCCCCHHHCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEE
T ss_conf 94789999640447855498976660694999999999999887427776627887899998889999999840875376
Q ss_pred CCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCCC
Q ss_conf 25764433467666666410163788875761698999999998634751002567876520004667400552045543
Q gi|254780552|r 85 TSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVG 164 (334)
Q Consensus 85 ~s~~~~~~~~dl~~~~~~~~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~~ 164 (334)
+||+++++++|+.+++.++++++||||||||||||.|||+|||+||+|.++++++++++|++.+++.|+||||||||+++
T Consensus 81 ~s~~~i~~~~di~~~l~~~~~~~ILFIDEIHr~nK~qqd~Llp~vE~g~i~i~ig~~~~A~~~~~e~P~FtLIgATTe~~ 160 (234)
T pfam05496 81 TSGPALEKPGDLAAILTNLEPGDVLFIDEIHRLNRAVEEILYPAMEDFRLDIVIGKGPSARSIRLDLPPFTLVGATTRAG 160 (234)
T ss_pred ECCHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCHHHHHHCCCCCCCCEEEEEECCCCCCEEEECCCCCEEEEEECCCCC
T ss_conf 14266643899999998458998899966543587688744553346169999636766324652689759985215666
Q ss_pred CCCHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 35545442012067326454799999877765412101111111233202210156788777543334554158
Q gi|254780552|r 165 LLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238 (334)
Q Consensus 165 ~l~~~l~sR~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~Gd~R~AlnlLe~v~d~a~~~~~ 238 (334)
++++||+|||.++++|++|+.+++.+|++|.++.++++++++|+..||++|+||+|.|+|+|++++|||+++|+
T Consensus 161 ~l~~pl~sR~~i~~~l~~l~~edl~~il~r~~~~l~i~i~~eal~~IA~~s~Gd~R~ALnlLe~v~d~a~~~~~ 234 (234)
T pfam05496 161 LLTSPLRDRFGIVLRLEFYSVEELEEIVKRSARILGVEIDEEGAAEIARRSRGTPRIANRLLRRVRDFAQVKGD 234 (234)
T ss_pred CCCHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 47777997621124424689999999999999983999599999999997799899998999999999987349
No 8
>KOG2028 consensus
Probab=100.00 E-value=0 Score=468.29 Aligned_cols=277 Identities=25% Similarity=0.292 Sum_probs=230.8
Q ss_pred CHHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCC---CCCCCCCCCCC
Q ss_conf 057875078987782397999999999999866146776707997378855778999999861898---53125764433
Q gi|254780552|r 16 DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN---FRSTSGPVIAK 92 (334)
Q Consensus 16 ~~~~~~lRP~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~---~~~~s~~~~~~ 92 (334)
.+..++|||++|+|+|||+|++++-..+..... +..+|+|||||||||||||+||+||+..... |+++|| .-.+
T Consensus 126 ~PLaermRPktL~dyvGQ~hlv~q~gllrs~ie--q~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSA-t~a~ 202 (554)
T KOG2028 126 KPLAERMRPKTLDDYVGQSHLVGQDGLLRSLIE--QNRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSA-TNAK 202 (554)
T ss_pred CCHHHHCCCCHHHHHCCHHHHCCCCHHHHHHHH--CCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEEEC-CCCC
T ss_conf 974554184368775053441483268999987--0888705886699876588999998605777427999741-4566
Q ss_pred HHHHHHHHHHH-------HCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCCCC
Q ss_conf 46766666641-------01637888757616989999999986347510025678765200046674005520455433
Q gi|254780552|r 93 AGDLAALLTNL-------EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165 (334)
Q Consensus 93 ~~dl~~~~~~~-------~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~~~ 165 (334)
+.|++.++... ++++||||||||||||.|||.|||++|+|.| +|||||||+++
T Consensus 203 t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQQD~fLP~VE~G~I--------------------~lIGATTENPS 262 (554)
T KOG2028 203 TNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQQDTFLPHVENGDI--------------------TLIGATTENPS 262 (554)
T ss_pred HHHHHHHHHHHHHHHHHHCCEEEEEEHHHHHHHHHHHHCCCCEECCCCE--------------------EEEECCCCCCC
T ss_conf 1889999999887876524406987377655323211003421306706--------------------99853668976
Q ss_pred --CCHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHC-----------C--CHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf --5545442012067326454799999877765412-----------1--011111112332022101567887775433
Q gi|254780552|r 166 --LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT-----------G--LAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230 (334)
Q Consensus 166 --l~~~l~sR~~~~~~~~~~~~~el~~il~~~~~~~-----------~--i~~~~~al~~ia~~s~Gd~R~AlnlLe~v~ 230 (334)
++.||+|||. ++.++++..+++..|+.|....+ + +.+++.++++|+..|+||+|.|||.||...
T Consensus 263 Fqln~aLlSRC~-VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~aLN~Lems~ 341 (554)
T KOG2028 263 FQLNAALLSRCR-VFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARAALNALEMSL 341 (554)
T ss_pred CCHHHHHHHCCC-EEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 011277873160-6673368889999999999876321025688999831245688999998704731888877899999
Q ss_pred HHHHH-HC---CCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 34554-15---886427787876542100000046776889999997518662069999998287456746789999998
Q gi|254780552|r 231 DFAEV-AH---AKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQ 306 (334)
Q Consensus 231 d~a~~-~~---~~~i~~~~~~~~l~~~~id~~Gl~~~d~~~L~~l~~~~~~g~~~~~~isA~~ks~RgS~~daa~~yL~r 306 (334)
..... .| ...++.+++++.++...+ .+++.|+.|||.|||+|||+||+|+||++|||+|
T Consensus 342 ~m~~tr~g~~~~~~lSidDvke~lq~s~~-----------------~YDr~Ge~HYntISA~HKSmRG~D~nAslY~LaR 404 (554)
T KOG2028 342 SMFCTRSGQSSRVLLSIDDVKEGLQRSHI-----------------LYDRAGEEHYNTISALHKSMRGSDQNASLYWLAR 404 (554)
T ss_pred HHHHHHCCCCCCCEECHHHHHHHHHHCCC-----------------EECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHH
T ss_conf 98875247765640028889999853120-----------------0045530577899999876017765527999999
Q ss_pred HHHCCCCHH--HHHHHHHHHHHCCCCCCC
Q ss_conf 343058718--999999888664888889
Q gi|254780552|r 307 QGFIQRTPR--GRLLMPIAWQHLGIDIPH 333 (334)
Q Consensus 307 ~g~~~~~pr--gRrL~~~a~EdiGla~P~ 333 (334)
|+.+||||. +||++..||||||||||-
T Consensus 405 MLegGEdPLYVARRlvR~ASEDIGlaD~S 433 (554)
T KOG2028 405 MLEGGEDPLYVARRLVRFASEDIGLADPS 433 (554)
T ss_pred HHCCCCCCHHHHHHHHHHHHCCCCCCCCH
T ss_conf 97168870799999998751033767803
No 9
>TIGR02397 dnaX_nterm DNA polymerase III, subunits gamma and tau; InterPro: IPR012763 This entry represents the well-conserved first N-terminal domain of DnaX, approx. 365 aa. The full-length product of the dnaX gene in Escherichia coli encodes the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the extreme thermophile Thermus thermophilis.; GO: 0003887 DNA-directed DNA polymerase activity, 0005524 ATP binding, 0006260 DNA replication, 0009360 DNA polymerase III complex.
Probab=100.00 E-value=0 Score=367.24 Aligned_cols=208 Identities=27% Similarity=0.337 Sum_probs=179.3
Q ss_pred HHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCE-EEECCCCCCHHHHHHHHHHHCCCCCCCCCCC---------
Q ss_conf 875078987782397999999999999866146776707-9973788557789999998618985312576---------
Q gi|254780552|r 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVNFRSTSGP--------- 88 (334)
Q Consensus 19 ~~~lRP~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~-Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~~--------- 88 (334)
..+-||++|+|||||+|++++|+.++...| ++|. ||+||+||||||+|||+||.+||. ....-|
T Consensus 5 aRKyRP~~F~d~~GQ~~iv~tL~NAi~~~r-----i~HAYLF~GpRGtGKTS~ARIfAKaLNC~-~~~~~PCn~C~~C~~ 78 (363)
T TIGR02397 5 ARKYRPQTFEDVIGQEHIVKTLKNAIKNGR-----IAHAYLFSGPRGTGKTSIARIFAKALNCQ-GPDGEPCNECESCKE 78 (363)
T ss_pred EECCCCCCCCCCCCCHHHHHHHHHHHHHCC-----CCCEEEECCCCCCCHHHHHHHHHHHHCCC-CCCCCCCCCCCHHHH
T ss_conf 222378861102351799999999997189-----66234502859976355899999986588-787787777502277
Q ss_pred ---------------CCCCHHHHHHHHHHHH------CCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEE
Q ss_conf ---------------4433467666666410------1637888757616989999999986347510025678765200
Q gi|254780552|r 89 ---------------VIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSV 147 (334)
Q Consensus 89 ---------------~~~~~~dl~~~~~~~~------~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~ 147 (334)
+-.+|.|++.+..+.+ +..|.+|||+|+|++.+++|||..+|+
T Consensus 79 i~~g~~~DviEiDAASN~gVD~IR~l~e~v~y~P~~~kYKvYIIDEVHMLS~~AFNALLKTLEE---------------- 142 (363)
T TIGR02397 79 INSGSSLDVIEIDAASNNGVDDIRELRENVKYAPSKGKYKVYIIDEVHMLSKSAFNALLKTLEE---------------- 142 (363)
T ss_pred HHCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCC----------------
T ss_conf 6528986668864865687889999987303687554433588732302865689998765227----------------
Q ss_pred ECCCCCCEEEECCCCCCCCCHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 04667400552045543355454420120673264547999998777654121011111112332022101567887775
Q gi|254780552|r 148 KINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227 (334)
Q Consensus 148 ~~~~~~f~lI~ATt~~~~l~~~l~sR~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~Gd~R~AlnlLe 227 (334)
|++++.||+||||++|||.+++|||. .|.|+..+.+++.+.|+.+++++++++|++||..||+.|+|+||+|+++|+
T Consensus 143 --PP~hV~FIlATTE~~KiP~TIlSRCQ-rF~Fk~i~~~~i~~~L~~I~~~E~I~~e~~AL~~IA~~a~GS~RDAlsllD 219 (363)
T TIGR02397 143 --PPEHVVFILATTEPHKIPATILSRCQ-RFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADGSMRDALSLLD 219 (363)
T ss_pred --CCCCEEEEEECCCHHHCCCCCEEECE-EECCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHH
T ss_conf --98762888734871120554021000-312678998999999999998708831778999999962896106889999
Q ss_pred HHHHHHHHHCCC---CCCHHHHHHHHHHHHC
Q ss_conf 433345541588---6427787876542100
Q gi|254780552|r 228 RVRDFAEVAHAK---TITREIADAALLRLAI 255 (334)
Q Consensus 228 ~v~d~a~~~~~~---~i~~~~~~~~l~~~~i 255 (334)
++. +.+++ .|+.+.|.+++...+.
T Consensus 220 Q~~----~~~~~~DG~i~~~~v~~~lGl~~~ 246 (363)
T TIGR02397 220 QAI----SFGNGSDGKITYEDVNEMLGLVDE 246 (363)
T ss_pred HHH----HHCCCCCCCCCHHHHHHHHCCCCH
T ss_conf 999----826887886578999998357778
No 10
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=0 Score=315.52 Aligned_cols=209 Identities=22% Similarity=0.258 Sum_probs=172.4
Q ss_pred HHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCC-EEEECCCCCCHHHHHHHHHHHCCCCC--------------
Q ss_conf 787507898778239799999999999986614677670-79973788557789999998618985--------------
Q gi|254780552|r 18 DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH-VLFVGPPGLGKTTLAQVVARELGVNF-------------- 82 (334)
Q Consensus 18 ~~~~lRP~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h-~Lf~GPpG~GKTtlA~iiA~~l~~~~-------------- 82 (334)
.-...||++|+|||||+|++..|+.++...+ ++| +||+|||||||||+||++|+.+||.-
T Consensus 6 LyrkyRP~~f~dvvgQ~~v~~~L~n~i~~~~-----i~hayLf~GprG~GKTs~Ari~akalnc~~~~~~~pC~~C~~C~ 80 (541)
T PRK05563 6 LYREWRPRTFEDVVGQEHITTTLKNQIINNR-----IAHAYLFCGTRGTGKTSTAKIFAKAVNCLNPQDGEPCNECEICK 80 (541)
T ss_pred HHHHHCCCCHHHHCCCHHHHHHHHHHHHCCC-----CCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH
T ss_conf 8876489977662484999999999998499-----32045303879958999999999995799988898575148899
Q ss_pred ----------CCCCCCCCCCHHHHHHHHHHH------HCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCE
Q ss_conf ----------312576443346766666641------0163788875761698999999998634751002567876520
Q gi|254780552|r 83 ----------RSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARS 146 (334)
Q Consensus 83 ----------~~~s~~~~~~~~dl~~~~~~~------~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~ 146 (334)
.+++|.+-.++.|++.+..+. .+..|++|||+|+|++.++++||..+|+
T Consensus 81 ~i~~g~~~Dv~Eidaas~~gvd~iR~~~~~~~~~p~~~~~Kv~IiDEvhmls~~a~nallKtlEe--------------- 145 (541)
T PRK05563 81 KINEGLLMDVIEIDAASNNGVDDIREIIENVKYPPQEGKYKVYIMDEVHMLSQGAVNAFLKTLEE--------------- 145 (541)
T ss_pred HHHCCCCCCEEEECCCCCCCHHHHHHHHHHCEECCCCCCEEEEEEECCCCCCHHHHHHHHHHHHC---------------
T ss_conf 98568988736624444478899999997610487678705999977233899999999999854---------------
Q ss_pred EECCCCCCEEEECCCCCCCCCHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 00466740055204554335545442012067326454799999877765412101111111233202210156788777
Q gi|254780552|r 147 VKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226 (334)
Q Consensus 147 ~~~~~~~f~lI~ATt~~~~l~~~l~sR~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~Gd~R~AlnlL 226 (334)
+.++..||+|||+++||+++++|||. .+.|.+.+.+++...++.+++.+++.++++|+..||+.|+|+||+|+++|
T Consensus 146 ---Pp~~~~Filatte~~ki~~tI~SRcq-~f~f~~i~~~~i~~~L~~I~~~E~i~~~~~al~lIa~~s~GsmRDAlslL 221 (541)
T PRK05563 146 ---PPSNVIFILATTDPQKLPITILSRCQ-RFDFKRIKVKDIFKRLRKIVEEQGIFADDKSLNLIARMSDGAMRDALSIL 221 (541)
T ss_pred ---CCCCCEEEEECCCCCCCCHHHHHHEE-EEEEEECCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHH
T ss_conf ---87775699976984427455674213-57754389999999999999984999878999999974599778899999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 5433345541588642778787654210
Q gi|254780552|r 227 RRVRDFAEVAHAKTITREIADAALLRLA 254 (334)
Q Consensus 227 e~v~d~a~~~~~~~i~~~~~~~~l~~~~ 254 (334)
+++.. .+++.|+.+.+...+...+
T Consensus 222 dQ~is----~~~~~it~~~v~~~lG~~~ 245 (541)
T PRK05563 222 DQAIS----MGDGKVDYDDVVSMLGLVT 245 (541)
T ss_pred HHHHH----HCCCCCCHHHHHHHHCCCC
T ss_conf 99998----3599866999999968999
No 11
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=0 Score=312.93 Aligned_cols=210 Identities=23% Similarity=0.282 Sum_probs=179.8
Q ss_pred HHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCE-EEECCCCCCHHHHHHHHHHHCCCC--------------
Q ss_conf 57875078987782397999999999999866146776707-997378855778999999861898--------------
Q gi|254780552|r 17 ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN-------------- 81 (334)
Q Consensus 17 ~~~~~lRP~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~-Lf~GPpG~GKTtlA~iiA~~l~~~-------------- 81 (334)
....+.||++|+|+|||+|++..|+.++...+ ++|. ||+||+||||||+|||+||.+||+
T Consensus 5 vlark~RP~~f~e~vGQ~~v~~~l~nal~~~r-----l~haylf~G~rGvGKTt~aRi~Ak~lnC~~~~~~~pcg~C~~C 79 (816)
T PRK07003 5 VLARKWRPKDFASLVGQEHVVRALTHALDGGR-----LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRAC 79 (816)
T ss_pred HHHHHHCCCCHHHHCCCHHHHHHHHHHHHCCC-----CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHH
T ss_conf 77755089857662384999999999997098-----6314751178988888999999998678999998978775557
Q ss_pred ----------CCCCCCCCCCCHHHHHHHHHHHH------CCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf ----------53125764433467666666410------16378887576169899999999863475100256787652
Q gi|254780552|r 82 ----------FRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSAR 145 (334)
Q Consensus 82 ----------~~~~s~~~~~~~~dl~~~~~~~~------~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~ 145 (334)
++++.|-+-.++.|++.++.+.. +..|++|||+|+|++..+++||..+|+
T Consensus 80 ~~i~~g~~~d~iEiDaAS~~~vd~~r~l~~~~~y~p~~~r~KvyiiDEvHmls~~afnalLKtlEe-------------- 145 (816)
T PRK07003 80 REIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEE-------------- 145 (816)
T ss_pred HHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECHHHCCHHHHHHHHHHHCC--------------
T ss_conf 877558877547863554357689999998622478667447999841543399999999984037--------------
Q ss_pred EEECCCCCCEEEECCCCCCCCCHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 00046674005520455433554544201206732645479999987776541210111111123320221015678877
Q gi|254780552|r 146 SVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225 (334)
Q Consensus 146 ~~~~~~~~f~lI~ATt~~~~l~~~l~sR~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~Gd~R~Alnl 225 (334)
+.+++.||+|||+++||+..++||| ..|.|+.++.++|...+.+++.+++++++++||..||+.++|+||+||++
T Consensus 146 ----pP~hv~FilaTTd~~k~p~tilSRc-~~f~l~~~~~~~i~~~l~~i~~~E~i~~e~~al~lia~~a~GsmRDalsl 220 (816)
T PRK07003 146 ----PPPHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSL 220 (816)
T ss_pred ----CCCCEEEEEECCCHHHCCHHHHHHH-HHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHH
T ss_conf ----9866489995588011528898777-65223679999999999999998299779999999999767737888859
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 75433345541588642778787654210
Q gi|254780552|r 226 LRRVRDFAEVAHAKTITREIADAALLRLA 254 (334)
Q Consensus 226 Le~v~d~a~~~~~~~i~~~~~~~~l~~~~ 254 (334)
|+ .|.+.+++.|+.+.|..+|..++
T Consensus 221 ~d----Qaia~~~g~~~~~~v~~mLG~~d 245 (816)
T PRK07003 221 TD----QAIAYSANEVTETAVSGMLGALD 245 (816)
T ss_pred HH----HHHHHCCCCCCHHHHHHHHCCCC
T ss_conf 99----99984699737999999858887
No 12
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=0 Score=309.16 Aligned_cols=212 Identities=23% Similarity=0.283 Sum_probs=177.6
Q ss_pred HHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCC-EEEECCCCCCHHHHHHHHHHHCCCCC-------------
Q ss_conf 5787507898778239799999999999986614677670-79973788557789999998618985-------------
Q gi|254780552|r 17 ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH-VLFVGPPGLGKTTLAQVVARELGVNF------------- 82 (334)
Q Consensus 17 ~~~~~lRP~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h-~Lf~GPpG~GKTtlA~iiA~~l~~~~------------- 82 (334)
.+....||++|+|+|||+|++..|+.++...+ ++| +||+||+||||||+||++|+++||.-
T Consensus 10 ~la~KyRP~~f~~liGQ~~~~~~l~n~i~~~~-----~~~aylf~G~rG~GKTt~Ari~ak~lnc~~~~~~~~~~~~c~~ 84 (507)
T PRK06645 10 PFARKYRPSNFAELQGQEVLVKVLSYTILNDR-----LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEK 84 (507)
T ss_pred EEEECCCCCCHHHHCCCHHHHHHHHHHHHCCC-----CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 64320079976562393999999999997399-----6634774587997889999999999679998888998888888
Q ss_pred ---------------CCCCCCCCCCHHHHHHHHHHHH------CCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf ---------------3125764433467666666410------1637888757616989999999986347510025678
Q gi|254780552|r 83 ---------------RSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEG 141 (334)
Q Consensus 83 ---------------~~~s~~~~~~~~dl~~~~~~~~------~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~ 141 (334)
.++.|.+-.++.|++.+..+.. +..|++|||+|+|++.++++||..+|+
T Consensus 85 c~~c~~i~~~~~~dv~EiDaas~~gv~~ir~l~~~~~~~p~~~~~kv~iidE~hmls~~a~nallktlEe---------- 154 (507)
T PRK06645 85 CTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEE---------- 154 (507)
T ss_pred CHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEEEECCHHHCCHHHHHHHHHHHHC----------
T ss_conf 7678998658999859963788888899999986355178767435899521422489999999997427----------
Q ss_pred CCCCEEECCCCCCEEEECCCCCCCCCHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHH
Q ss_conf 76520004667400552045543355454420120673264547999998777654121011111112332022101567
Q gi|254780552|r 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRI 221 (334)
Q Consensus 142 ~~a~~~~~~~~~f~lI~ATt~~~~l~~~l~sR~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~Gd~R~ 221 (334)
+.+++.||+|||++.||+.++.|||. .+.|.+.+.+++...++.+++.++++++++|+..||+.|+|++|+
T Consensus 155 --------pp~~~~Fi~atte~~kip~ti~srcq-~f~~~~i~~~~i~~~l~~i~~~E~~~~~~~al~~ia~~a~Gs~RD 225 (507)
T PRK06645 155 --------PPPHIIFIFATTEVQKIPATIISRCQ-RYDLRRLSFEEIFKLLEYITKQENLKADIEALRIIAYKSEGSARD 225 (507)
T ss_pred --------CCCCEEEEEECCCHHHCCHHHHHHCE-EEEEECCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHH
T ss_conf --------86443899974853648378885432-787545997999999999999768777789999999855998678
Q ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 88777543334554158864277878765421
Q gi|254780552|r 222 AGRLLRRVRDFAEVAHAKTITREIADAALLRL 253 (334)
Q Consensus 222 AlnlLe~v~d~a~~~~~~~i~~~~~~~~l~~~ 253 (334)
|+++|+++..++ ..+++.|+.+.++++|...
T Consensus 226 alslldqai~~~-~~~~~~I~~~~V~~MLGl~ 256 (507)
T PRK06645 226 AVSILDQAASMS-AKSDNIISPQVINQMLGLV 256 (507)
T ss_pred HHHHHHHHHHHH-CCCCCCCCHHHHHHHHCCC
T ss_conf 999999999975-4898702699999983899
No 13
>PRK08853 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=0 Score=309.54 Aligned_cols=210 Identities=24% Similarity=0.277 Sum_probs=178.1
Q ss_pred HHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCE-EEECCCCCCHHHHHHHHHHHCCCCCC------------
Q ss_conf 57875078987782397999999999999866146776707-99737885577899999986189853------------
Q gi|254780552|r 17 ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVNFR------------ 83 (334)
Q Consensus 17 ~~~~~lRP~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~-Lf~GPpG~GKTtlA~iiA~~l~~~~~------------ 83 (334)
....+.||++|+|+|||+|+++.|+.++...+ ++|. ||+||+||||||+|||+|+.+||.-.
T Consensus 5 vlark~RP~~f~e~vGQ~~v~~~L~nal~~~r-----l~haylf~G~rGvGKTt~ARi~Ak~lNC~~~~~~~pcg~C~~C 79 (717)
T PRK08853 5 ALARKWRPTQFKEVVGQSHVLTALENALAHNR-----LHHAYLFSGTRGVGKTTIGRLFAKGLNCETGITSTPCGQCATC 79 (717)
T ss_pred HHHHHHCCCCHHHHCCCHHHHHHHHHHHHCCC-----CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCH
T ss_conf 77765179856551385999999999997099-----7405761088988898999999998678999999978887026
Q ss_pred ------------CCCCCCCCCHHHHHHHHHHHH------CCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf ------------125764433467666666410------16378887576169899999999863475100256787652
Q gi|254780552|r 84 ------------STSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSAR 145 (334)
Q Consensus 84 ------------~~s~~~~~~~~dl~~~~~~~~------~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~ 145 (334)
++.|.+-.++.|++.++.+.. +..|++|||+|+|++..+++||+.+|+
T Consensus 80 ~~i~~g~~~d~~EiDaAs~~~vdd~rel~~~~~y~p~~~~yKvyiiDEvHmls~~afnAlLKtlEE-------------- 145 (717)
T PRK08853 80 KEIDEGRFVDLLEIDAASRTKVEDTRELLDNVQYKPARGRFKVYLIDEVHMLSRHSFNALLKTLEE-------------- 145 (717)
T ss_pred HHHHCCCCCCEEEECCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECHHHCCHHHHHHHHHHHCC--------------
T ss_conf 767447877524540565678899999998555488778547999830544389999999876037--------------
Q ss_pred EEECCCCCCEEEECCCCCCCCCHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 00046674005520455433554544201206732645479999987776541210111111123320221015678877
Q gi|254780552|r 146 SVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225 (334)
Q Consensus 146 ~~~~~~~~f~lI~ATt~~~~l~~~l~sR~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~Gd~R~Alnl 225 (334)
+.+++.||+|||+++||+..++||| ..|.|+.++.++|...+.+++..++++++++|+..||+.++|+||+|+++
T Consensus 146 ----PP~hv~FilaTT~~~kip~TilSRc-~~f~l~~~~~~~i~~~l~~i~~~E~i~~~~~al~~ia~~a~Gs~Rdalsl 220 (717)
T PRK08853 146 ----PPEYVKFLLATTDPQKLPVTILSRC-LQFHLKPISVDQIHQQLDFVLDKEQVSAEARALGLIAHAADGSMRDALSL 220 (717)
T ss_pred ----CCCCEEEEEECCCHHHCCHHHHHHH-HHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHH
T ss_conf ----8756489984387343738898765-44232689999999999999997598769999999999768837788889
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 75433345541588642778787654210
Q gi|254780552|r 226 LRRVRDFAEVAHAKTITREIADAALLRLA 254 (334)
Q Consensus 226 Le~v~d~a~~~~~~~i~~~~~~~~l~~~~ 254 (334)
|+ .|.+.|.+.|+.+.|..+|..++
T Consensus 221 ~d----qaia~~~g~~~~~~v~~mlg~~d 245 (717)
T PRK08853 221 TD----QAIALGNGQVTTDIVSHMLGTLD 245 (717)
T ss_pred HH----HHHHHCCCCCCHHHHHHHHCCCC
T ss_conf 99----99996589716999999858887
No 14
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=0 Score=305.78 Aligned_cols=215 Identities=24% Similarity=0.284 Sum_probs=178.4
Q ss_pred CCCCCHHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCE-EEECCCCCCHHHHHHHHHHHCCCCCC-------
Q ss_conf 4412057875078987782397999999999999866146776707-99737885577899999986189853-------
Q gi|254780552|r 12 VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVNFR------- 83 (334)
Q Consensus 12 ~~~~~~~~~~lRP~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~-Lf~GPpG~GKTtlA~iiA~~l~~~~~------- 83 (334)
.++-.....+.||++|+|+|||+|+++.|+.++...+ ++|. ||+||+||||||+|||+|+.+||.-.
T Consensus 7 ~~~y~~l~~k~rp~~f~~~~gq~~~~~~l~~~~~~~~-----~~~a~l~~g~rg~gktt~ari~a~~lnc~~~~~~~~~~ 81 (600)
T PRK09111 7 ATPYRVLARKYRPQTFDDLIGQEAMVRTLRNAFETGR-----IAQAFMLTGVRGVGKTTTARILARALNYKGPDGVGGPT 81 (600)
T ss_pred CCCEEEEEECCCCCCHHHHCCCHHHHHHHHHHHHCCC-----CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 9860243210179877663385999999999997298-----42047645789878999999999996698876668998
Q ss_pred ----------------------CCCCCCCCCHHHHHHHHHHHH------CCCHHHHHHHHHCCHHHHHHHHHHHHCCCCC
Q ss_conf ----------------------125764433467666666410------1637888757616989999999986347510
Q gi|254780552|r 84 ----------------------STSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 (334)
Q Consensus 84 ----------------------~~s~~~~~~~~dl~~~~~~~~------~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~ 135 (334)
++.|.+-.++.|++.++.+.. +..|++|||+|+|++.++++||..+|+
T Consensus 82 ~~~c~~c~~c~~i~~~~~~d~~e~daas~~~v~~~r~~~~~~~~~p~~~~~kv~iidevhmls~~afnallktlee---- 157 (600)
T PRK09111 82 IDPCGVGEHCQAIMEGRHVDVIEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEE---- 157 (600)
T ss_pred CCCCCCCHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHC----
T ss_conf 8989988658988668998758851554578889999998605388777546999600110579999999987625----
Q ss_pred CCCCCCCCCCEEECCCCCCEEEECCCCCCCCCHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC
Q ss_conf 02567876520004667400552045543355454420120673264547999998777654121011111112332022
Q gi|254780552|r 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRS 215 (334)
Q Consensus 136 i~~~~~~~a~~~~~~~~~f~lI~ATt~~~~l~~~l~sR~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s 215 (334)
+.+++.||+|||++.||+..++|||. .|.|++.+.+++...+.++++.++++++++|+..||+.|
T Consensus 158 --------------pp~~~~fi~att~~~k~p~ti~src~-~f~~~~~~~~~~~~~l~~i~~~e~~~~~~~al~~ia~~a 222 (600)
T PRK09111 158 --------------PPPHVKFIFATTEIRKVPVTVLSRCQ-RFDLRRIEAEVLAAHLARIAEKEGVEVEPDALALIARAA 222 (600)
T ss_pred --------------CCCCEEEEEECCCHHHCCHHHHHHHH-EECCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHC
T ss_conf --------------98654999962853437589985441-201057999999999999998607686677999999974
Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 101567887775433345541588642778787654210
Q gi|254780552|r 216 RGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 (334)
Q Consensus 216 ~Gd~R~AlnlLe~v~d~a~~~~~~~i~~~~~~~~l~~~~ 254 (334)
+|++|+|+++|+++ .+.+.+.|+.+.++++|...+
T Consensus 223 ~GS~RDaLSlLDQa----i~~~~~~i~~~~v~~mLGl~d 257 (600)
T PRK09111 223 EGSVRDGLSLLDQA----IAHGAGEVTAEQVRDMLGLAD 257 (600)
T ss_pred CCCCCHHHHHHHHH----HHCCCCCCCHHHHHHHHCCCC
T ss_conf 89842189999999----972798756999999868876
No 15
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=0 Score=304.71 Aligned_cols=210 Identities=24% Similarity=0.286 Sum_probs=174.4
Q ss_pred HHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCC-EEEECCCCCCHHHHHHHHHHHCCCCCC------------
Q ss_conf 5787507898778239799999999999986614677670-799737885577899999986189853------------
Q gi|254780552|r 17 ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH-VLFVGPPGLGKTTLAQVVARELGVNFR------------ 83 (334)
Q Consensus 17 ~~~~~lRP~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h-~Lf~GPpG~GKTtlA~iiA~~l~~~~~------------ 83 (334)
....+.||++|+|+|||+|++..|+.++...+ ++| +||+||+||||||+||++|+.++|.--
T Consensus 6 vlarKYRP~~F~dvVGQ~~vv~~L~nai~~~r-----i~HAyLF~GprGtGKTT~ArilAkaLnC~~~~~~~~pCg~C~~ 80 (462)
T PRK06305 6 VSSRKYRPQTFSEILGQDAVVTVLKNALRFNR-----AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCAI 80 (462)
T ss_pred HHHHHHCCCCHHHHCCCHHHHHHHHHHHHCCC-----CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHH
T ss_conf 78876388987660490999999999998499-----7623430389985999999999999679999888898876688
Q ss_pred -------------CCCCCCCCCHHHHHHHHHHH------HCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf -------------12576443346766666641------01637888757616989999999986347510025678765
Q gi|254780552|r 84 -------------STSGPVIAKAGDLAALLTNL------EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSA 144 (334)
Q Consensus 84 -------------~~s~~~~~~~~dl~~~~~~~------~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a 144 (334)
+++|....++.|++.+..+. ++..|++|||+|+|++.++++||..||+.
T Consensus 81 C~~I~~g~~~DViEiDaAs~~gVddIRel~e~v~~~P~~~~yKVyIIDEvhmLs~~AfNALLKtLEEP------------ 148 (462)
T PRK06305 81 CKEISSGTSLDVIEIDGASHRGIEDIRQINETVLFTPSKSQYKIYIIDEVHMLTKEAFNSLLKTLEEP------------ 148 (462)
T ss_pred HHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEECHHHCCHHHHHHHHHHHHCC------------
T ss_conf 89986389998686435534466899999977100886775059998152117999999999986189------------
Q ss_pred CEEECCCCCCEEEECCCCCCCCCHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 20004667400552045543355454420120673264547999998777654121011111112332022101567887
Q gi|254780552|r 145 RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGR 224 (334)
Q Consensus 145 ~~~~~~~~~f~lI~ATt~~~~l~~~l~sR~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~Gd~R~Aln 224 (334)
.++..||+|||+++||+++++|||. .++|.+.+.+++...++.++++++++++++|+..||+.|+|++|+|++
T Consensus 149 ------P~~v~FILaTTe~~KIp~TIlSRCQ-rf~F~~i~~~~I~~~L~~I~~~E~i~~e~~AL~lIA~~a~GsmRDAls 221 (462)
T PRK06305 149 ------PQHVKFFLATTEIHKIPGTILSRCQ-KMHLKRIPEETIIDKLALIAQQDGIETSREALLPIARAAQGSLRDAES 221 (462)
T ss_pred ------CCCEEEEEEECCHHHCCHHHHHHHH-EEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHH
T ss_conf ------8774999981881428547876540-233257999999999999999839985999999999985895878999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 775433345541588642778787654210
Q gi|254780552|r 225 LLRRVRDFAEVAHAKTITREIADAALLRLA 254 (334)
Q Consensus 225 lLe~v~d~a~~~~~~~i~~~~~~~~l~~~~ 254 (334)
+|+++. ..+++.|+.+.|.+++...+
T Consensus 222 lLDQ~i----~~~~~~it~~~V~~~lG~v~ 247 (462)
T PRK06305 222 LYDYVV----GLFPKSLSPDTVAKALGLLS 247 (462)
T ss_pred HHHHHH----HHCCCCCCHHHHHHHHCCCC
T ss_conf 999999----84799868999999868998
No 16
>TIGR02902 spore_lonB ATP-dependent protease LonB; InterPro: IPR014251 This entry represents LonB, a paralog of the ATP-dependent protease La (LonA, IPR004815 from INTERPRO). LonB proteins are unassigned peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SJ) and are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore during sporulation, under control of sigmaF . The lonB gene, despite being located immediately upstream of lonA, was shown to be monocistronic. LonB appears to be involved in the post-translation control of sigmaH, but lonB mutation did not produce an obvious sporulation defect under the conditions tested . Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and these are excluded from this entry. .
Probab=100.00 E-value=0 Score=314.33 Aligned_cols=233 Identities=27% Similarity=0.292 Sum_probs=187.2
Q ss_pred CCCCHHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCC----------CCC
Q ss_conf 4120578750789877823979999999999998661467767079973788557789999998618----------985
Q gi|254780552|r 13 SQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG----------VNF 82 (334)
Q Consensus 13 ~~~~~~~~~lRP~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~----------~~~ 82 (334)
.-.+|+-|+-||++|+|+|||++=++.||.+++ |..+.|+|.|||||+|||--||++-++-. ..|
T Consensus 50 ~Lt~PL~Ek~RP~SF~EIiGQe~GI~ALKAALC-----GPNPQHVIiYGPPGVGKTAAARLVLeeAKk~~~SPFke~A~F 124 (532)
T TIGR02902 50 RLTEPLSEKTRPKSFDEIIGQEEGIKALKAALC-----GPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEEAAF 124 (532)
T ss_pred ECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCC-----CCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEE
T ss_conf 167887746677763325673556899998606-----868963898788696178999999998650875378988668
Q ss_pred CCCCCCCCC------------CHHH--------H--H-------HHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHCCC
Q ss_conf 312576443------------3467--------6--6-------666641016378887576169899999999863475
Q gi|254780552|r 83 RSTSGPVIA------------KAGD--------L--A-------ALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 (334)
Q Consensus 83 ~~~s~~~~~------------~~~d--------l--~-------~~~~~~~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~ 133 (334)
+++.|+.+. .+-| + + +.+|.++ |.|||||||=+|++.|++-||.+|||+|
T Consensus 125 VEiDATT~RFDERGIADPLIGSVHDPIYQGAGplG~AGIPQPK~GAVT~AH-GGvLFIDEIGELHP~~MNKLLKVLEDRK 203 (532)
T TIGR02902 125 VEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGVAGIPQPKPGAVTKAH-GGVLFIDEIGELHPVQMNKLLKVLEDRK 203 (532)
T ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCEEEECCCCCCCHHHHHHHHHHHHCCC
T ss_conf 985051036021466665677615853337654578855758777632025-8655121246658243531411330222
Q ss_pred CCCCCCCCCCCCEE-ECC-----------CCCCEEEECCCCCC-CCCHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCC
Q ss_conf 10025678765200-046-----------67400552045543-355454420120673264547999998777654121
Q gi|254780552|r 134 LDLMVGEGPSARSV-KIN-----------LSRFTLIAATTRVG-LLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200 (334)
Q Consensus 134 i~i~~~~~~~a~~~-~~~-----------~~~f~lI~ATt~~~-~l~~~l~sR~~~~~~~~~~~~~el~~il~~~~~~~~ 200 (334)
|+ +.+++++... .++ ..+|-|||||||.| -|++||||||--+| |+++..||+++|.+++++|.+
T Consensus 204 VF--LdSAYY~s~~pniP~hI~dIFqnGlPADFRLiGATTR~PeEIpPAlRSRC~EIF-FR~L~~EEi~~iAk~AaeKIg 280 (532)
T TIGR02902 204 VF--LDSAYYSSEDPNIPSHIRDIFQNGLPADFRLIGATTRNPEEIPPALRSRCVEIF-FRPLLKEEIKEIAKNAAEKIG 280 (532)
T ss_pred CH--HHCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCCCCCCHHHHCCCEEEE-ECCCCHHHHHHHHHHHHHHCC
T ss_conf 00--001235877786542789972067873401213336987767834650522677-168887899999876565304
Q ss_pred CHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHC
Q ss_conf 0111111123320221015678877754333455415886427787876542100
Q gi|254780552|r 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAI 255 (334)
Q Consensus 201 i~~~~~al~~ia~~s~Gd~R~AlnlLe~v~d~a~~~~~~~i~~~~~~~~l~~~~i 255 (334)
++++++|++.|.++|+ +-|.|+|++|.+.=.+..++.+.|..++++++...-.+
T Consensus 281 ~~l~~~Al~~I~~Ya~-nGREAvN~~QLAaG~a~~E~Rk~I~~~DieWV~~~G~y 334 (532)
T TIGR02902 281 LNLEKEALDLIAKYAS-NGREAVNLVQLAAGIALGENRKRILAEDIEWVIESGNY 334 (532)
T ss_pred CCCCHHHHHHHHHHHC-CCCHHHHHHHHHHHHEECCCCCEECHHHHHHHHHHCCC
T ss_conf 6547547999998740-54067789999731401288761205464455530478
No 17
>PRK06872 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=0 Score=300.14 Aligned_cols=209 Identities=23% Similarity=0.271 Sum_probs=178.2
Q ss_pred HHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCE-EEECCCCCCHHHHHHHHHHHCCCCCC-------------
Q ss_conf 7875078987782397999999999999866146776707-99737885577899999986189853-------------
Q gi|254780552|r 18 DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVNFR------------- 83 (334)
Q Consensus 18 ~~~~lRP~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~-Lf~GPpG~GKTtlA~iiA~~l~~~~~------------- 83 (334)
...+.||++|+|+|||+|++..|+.++...+ ++|. ||+||+||||||+|||+|+.|||.-.
T Consensus 6 lark~rp~~f~~~vgq~~v~~~l~~a~~~~r-----~~haylf~g~rg~gktt~ari~ak~lnc~~~~~~~pcg~c~~c~ 80 (696)
T PRK06872 6 LARKWRPKTFSEVVGQEHILTALSNGLKENR-----LHHAYLFSGTRGVGKTSIARLFAKGLNCVHGVTATPCGECENCK 80 (696)
T ss_pred HHHHHCCCCHHHHCCCHHHHHHHHHHHHCCC-----CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH
T ss_conf 7765188756452385999999999997198-----63047511789888889999999986789999999788862257
Q ss_pred -----------CCCCCCCCCHHHHHHHHHHHH------CCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCE
Q ss_conf -----------125764433467666666410------163788875761698999999998634751002567876520
Q gi|254780552|r 84 -----------STSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARS 146 (334)
Q Consensus 84 -----------~~s~~~~~~~~dl~~~~~~~~------~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~ 146 (334)
++.|.+-.++.|++.++.+.. +..|.+|||+|+|++..+++||..+|+
T Consensus 81 ~i~~g~~~d~~eidaas~~~v~~~r~l~~~~~~~p~~~~~kvy~idevhmls~~~fnallktlee--------------- 145 (696)
T PRK06872 81 AIEEGNFIDLIEIDAASRTKVEDTRELLDNVQYKPVVGRFKVYLIDEVHMLSRHSFNALLKTLEE--------------- 145 (696)
T ss_pred HHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEEHHHHCCHHHHHHHHHHHCC---------------
T ss_conf 67447877546750565578899999998454577677547999700544389999999875027---------------
Q ss_pred EECCCCCCEEEECCCCCCCCCHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 00466740055204554335545442012067326454799999877765412101111111233202210156788777
Q gi|254780552|r 147 VKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226 (334)
Q Consensus 147 ~~~~~~~f~lI~ATt~~~~l~~~l~sR~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~Gd~R~AlnlL 226 (334)
+.+++.||+|||+++||+..++||| ..|.|+..+.++|...+.+++.++++.++++|+..||+.++|+||+|+++|
T Consensus 146 ---pp~~v~f~latt~~~k~p~tilsrc-~~f~~~~~~~~~i~~~l~~i~~~e~~~~~~~al~~~a~~a~gs~rdalsl~ 221 (696)
T PRK06872 146 ---PPEYVKFLLATTDPQKLPITILSRC-MQFHLKALDQTQIAQHLEFILTQENIPFESPALEKLAKAAQGSIRDSLSLT 221 (696)
T ss_pred ---CCCCEEEEEECCCHHHCCHHHHHHH-HHEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHH
T ss_conf ---9754489984386322748898766-530026899999999999999984997799999999997589567788899
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 5433345541588642778787654210
Q gi|254780552|r 227 RRVRDFAEVAHAKTITREIADAALLRLA 254 (334)
Q Consensus 227 e~v~d~a~~~~~~~i~~~~~~~~l~~~~ 254 (334)
+ .|.+.|.+.|+.+.|..+|..++
T Consensus 222 d----qai~~~~g~~~~~~v~~mlg~~~ 245 (696)
T PRK06872 222 D----QAIAMSNANITLDVVSNMLGLLD 245 (696)
T ss_pred H----HHHHHCCCCCCHHHHHHHHCCCC
T ss_conf 9----99997589616999999858887
No 18
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=0 Score=301.87 Aligned_cols=210 Identities=23% Similarity=0.282 Sum_probs=178.3
Q ss_pred HHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCE-EEECCCCCCHHHHHHHHHHHCCCCCC------------
Q ss_conf 57875078987782397999999999999866146776707-99737885577899999986189853------------
Q gi|254780552|r 17 ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVNFR------------ 83 (334)
Q Consensus 17 ~~~~~lRP~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~-Lf~GPpG~GKTtlA~iiA~~l~~~~~------------ 83 (334)
....+.||++|+|+|||+|++..|+.++...+ ++|. ||+||+||||||+|||+|+.+||+-.
T Consensus 5 ~lark~Rp~~f~~~vGQ~~v~~~l~na~~~~r-----~~haylf~G~rG~GKtt~ari~ak~lnc~~~~~~~pcg~c~~c 79 (643)
T PRK07994 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNC 79 (643)
T ss_pred HHHHHHCCCCHHHHCCCHHHHHHHHHHHHHCC-----CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHH
T ss_conf 77765288866665387999999999998298-----6634874589988888999999999679999999978767768
Q ss_pred ------------CCCCCCCCCHHHHHHHHHHHH------CCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf ------------125764433467666666410------16378887576169899999999863475100256787652
Q gi|254780552|r 84 ------------STSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSAR 145 (334)
Q Consensus 84 ------------~~s~~~~~~~~dl~~~~~~~~------~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~ 145 (334)
++.|.+-.++.|++.++.+.. +..|++|||+|+|++..+++||..+|+
T Consensus 80 ~~i~~g~~~d~~eidaas~~~vd~~rel~~~~~y~p~~~r~kvyiidEvhmls~~afnalLKtlEe-------------- 145 (643)
T PRK07994 80 REIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEE-------------- 145 (643)
T ss_pred HHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECHHHCCHHHHHHHHHHHCC--------------
T ss_conf 988658988758863677788899999998446688778536999722101589999999986237--------------
Q ss_pred EEECCCCCCEEEECCCCCCCCCHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 00046674005520455433554544201206732645479999987776541210111111123320221015678877
Q gi|254780552|r 146 SVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225 (334)
Q Consensus 146 ~~~~~~~~f~lI~ATt~~~~l~~~l~sR~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~Gd~R~Alnl 225 (334)
+.+++.||+|||+++||+..++|||. .|.|+..+.+++...+..+++.+++.++++|+..||+.++|+||+|+++
T Consensus 146 ----Pp~hv~filaTT~~~k~p~TilSRC~-~f~~~~~~~~~i~~~l~~i~~~e~i~~~~~al~~ia~~a~gs~rdalsl 220 (643)
T PRK07994 146 ----PPAHVKFLLATTDPQKLPVTILSRCL-QFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAADGSLRDALSL 220 (643)
T ss_pred ----CCHHCEEEEECCCHHHCCHHHHHHHH-HEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHH
T ss_conf ----86100899860774548478997776-5001669999999999999997599878899999999747865668889
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 75433345541588642778787654210
Q gi|254780552|r 226 LRRVRDFAEVAHAKTITREIADAALLRLA 254 (334)
Q Consensus 226 Le~v~d~a~~~~~~~i~~~~~~~~l~~~~ 254 (334)
|++ |.+.|++.|+.+.|..+|...+
T Consensus 221 ~dq----~i~~~~~~~~~~~v~~mlg~~d 245 (643)
T PRK07994 221 TDQ----AIASGDGQVSTQAVSAMLGTLD 245 (643)
T ss_pred HHH----HHHHCCCCCCHHHHHHHHCCCC
T ss_conf 999----9986589747999999858998
No 19
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=0 Score=302.17 Aligned_cols=210 Identities=20% Similarity=0.237 Sum_probs=178.0
Q ss_pred HHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCE-EEECCCCCCHHHHHHHHHHHCCCCCC------------
Q ss_conf 57875078987782397999999999999866146776707-99737885577899999986189853------------
Q gi|254780552|r 17 ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVNFR------------ 83 (334)
Q Consensus 17 ~~~~~lRP~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~-Lf~GPpG~GKTtlA~iiA~~l~~~~~------------ 83 (334)
.+..+.||++|+|+|||+|++..|+.++...+ ++|. ||+||+||||||+|||+|+.+||.-.
T Consensus 5 vlark~RP~~F~e~vGQ~~v~~~L~nal~~~r-----l~haylf~G~rGvGKTt~Ari~Ak~lNC~~~~~~~pCg~C~~C 79 (704)
T PRK08691 5 VLARKWRPKTFADLVGQEHVVKALQNALDEGR-----LHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSC 79 (704)
T ss_pred HHHHHHCCCCHHHHCCCHHHHHHHHHHHHHCC-----CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHH
T ss_conf 77765188747564186999999999998199-----7523750278987888999999999679999999978777767
Q ss_pred ------------CCCCCCCCCHHHHHHHHHHHH------CCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf ------------125764433467666666410------16378887576169899999999863475100256787652
Q gi|254780552|r 84 ------------STSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSAR 145 (334)
Q Consensus 84 ------------~~s~~~~~~~~dl~~~~~~~~------~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~ 145 (334)
++.+.+-.++.|++.++.+.. +..|++|||+|+|++..+++||+.+|+
T Consensus 80 ~~i~~g~~~D~~EiDaAs~~~vdd~R~l~~~~~y~P~~~~yKVyiiDEvhmLs~~afNAlLKtLEE-------------- 145 (704)
T PRK08691 80 TQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEE-------------- 145 (704)
T ss_pred HHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECHHHCCHHHHHHHHHHHCC--------------
T ss_conf 878558998747742454458899999998534688678535999831544389999999986147--------------
Q ss_pred EEECCCCCCEEEECCCCCCCCCHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 00046674005520455433554544201206732645479999987776541210111111123320221015678877
Q gi|254780552|r 146 SVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225 (334)
Q Consensus 146 ~~~~~~~~f~lI~ATt~~~~l~~~l~sR~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~Gd~R~Alnl 225 (334)
+.++..||+|||+++||+..++|||. .|.|+..+.++|...+.+++.+++++++++|+..||+.++|+||+|+++
T Consensus 146 ----PP~~v~FilaTTdp~Klp~TIlSRC~-~f~l~~~~~~~i~~~L~~i~~~E~i~~e~~al~~ia~~a~Gs~RDalsl 220 (704)
T PRK08691 146 ----PPEHVKFILATTDPHKVPVTVLSRCL-QFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRDALSL 220 (704)
T ss_pred ----CCCCEEEEEECCCHHHCCHHHHHHHH-HHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHH
T ss_conf ----97560899854884647589998887-7102689999999999999998398568999999999757857779889
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 75433345541588642778787654210
Q gi|254780552|r 226 LRRVRDFAEVAHAKTITREIADAALLRLA 254 (334)
Q Consensus 226 Le~v~d~a~~~~~~~i~~~~~~~~l~~~~ 254 (334)
|+ .|.+.|.+.|+.+.|..+|..++
T Consensus 221 ld----Qaia~~~g~~~~~~v~~mLG~~d 245 (704)
T PRK08691 221 LD----QAIALGSGKVAENDVRQMIGAVD 245 (704)
T ss_pred HH----HHHHHCCCCCCHHHHHHHHCCCC
T ss_conf 99----99996489626999999858887
No 20
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=0 Score=301.44 Aligned_cols=210 Identities=22% Similarity=0.277 Sum_probs=176.5
Q ss_pred HHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCE-EEECCCCCCHHHHHHHHHHHCCC-----C-------C-
Q ss_conf 57875078987782397999999999999866146776707-99737885577899999986189-----8-------5-
Q gi|254780552|r 17 ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGV-----N-------F- 82 (334)
Q Consensus 17 ~~~~~lRP~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~-Lf~GPpG~GKTtlA~iiA~~l~~-----~-------~- 82 (334)
....+.||++|+|+|||+|++..|+.++...+ ++|. ||+||.||||||+|||+||.+|| + |
T Consensus 5 vlark~RP~~F~~~vGQ~~v~~~l~na~~~~r-----~~haylf~G~rGvGKTt~ari~Ak~lnc~~~~~~~g~~~~pcg 79 (721)
T PRK12323 5 VLARKWRPRDFTTLVGQEHVVRALTHALEQQR-----LHHAYLFTGTRGVGKTTLSRILAKSLNCTGPDGEGGITAQPCG 79 (721)
T ss_pred HHHHHHCCCCHHHHCCCHHHHHHHHHHHHCCC-----CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 67654079866553285999999999997199-----7544750279988898999999999768998667898788787
Q ss_pred -----CCC-----------CCCCCCCHHHHHHHHHHHH------CCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf -----312-----------5764433467666666410------163788875761698999999998634751002567
Q gi|254780552|r 83 -----RST-----------SGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGE 140 (334)
Q Consensus 83 -----~~~-----------s~~~~~~~~dl~~~~~~~~------~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~ 140 (334)
..+ .|.+-.++.|++.++.+.. +..|.+|||+|+|++..+++||..+|+
T Consensus 80 ~C~~C~~i~~g~~~d~~EiDaas~~~v~~~r~l~~~~~y~P~~~~~KvyiiDevhmls~~afnalLKtlEe--------- 150 (721)
T PRK12323 80 QCRACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDQAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEE--------- 150 (721)
T ss_pred CCHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHCC---------
T ss_conf 76546877568987647743676788899999998545588766446999854000589999999984017---------
Q ss_pred CCCCCEEECCCCCCEEEECCCCCCCCCHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHH
Q ss_conf 87652000466740055204554335545442012067326454799999877765412101111111233202210156
Q gi|254780552|r 141 GPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPR 220 (334)
Q Consensus 141 ~~~a~~~~~~~~~f~lI~ATt~~~~l~~~l~sR~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~Gd~R 220 (334)
+.+++.||+|||+++||+..++||| ..|.|+..+.++|...+.++++++++.++++|+..||+.++|+||
T Consensus 151 ---------PP~hv~FilaTT~~~Kip~TilSRc-~~f~~~~~~~~~i~~~l~~i~~~E~i~~~~~al~~ia~~a~Gs~R 220 (721)
T PRK12323 151 ---------PPPHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPPGHIVSHLDAILGQEGIGHEGNALRLLAQAAHGSMR 220 (721)
T ss_pred ---------CCCCEEEEEECCCHHHCCHHHHHHH-HHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHH
T ss_conf ---------9755389994386344858898776-542347899999999999999983997799999999997589647
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 7887775433345541588642778787654210
Q gi|254780552|r 221 IAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 (334)
Q Consensus 221 ~AlnlLe~v~d~a~~~~~~~i~~~~~~~~l~~~~ 254 (334)
+|+++|++ |.+.+++.|+.+.|..+|...+
T Consensus 221 DalslldQ----aia~~~g~~~~~~v~~mlg~~d 250 (721)
T PRK12323 221 DALSLTDQ----AIAYSAGNVSEEAVRGMLGAID 250 (721)
T ss_pred HHHHHHHH----HHHHCCCCCCHHHHHHHHCCCC
T ss_conf 68889999----9986589626999999868887
No 21
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=0 Score=300.20 Aligned_cols=211 Identities=22% Similarity=0.274 Sum_probs=174.2
Q ss_pred HHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCE-EEECCCCCCHHHHHHHHHHHCCCCCC------------
Q ss_conf 57875078987782397999999999999866146776707-99737885577899999986189853------------
Q gi|254780552|r 17 ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVNFR------------ 83 (334)
Q Consensus 17 ~~~~~lRP~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~-Lf~GPpG~GKTtlA~iiA~~l~~~~~------------ 83 (334)
......||++|+|+|||+|++..|+.++...+ ++|. ||+||+||||||+||++|+.++|.-.
T Consensus 7 ~L~RKYRPk~F~EVIGQe~Vv~tL~nAI~~gR-----IaHAYLF~GPRGvGKTT~ARIfAKaLNC~~~~d~~~pC~~C~~ 81 (718)
T PRK07133 7 ALYRKYRPKKFDEIKGQDHIIETLKNIIKSGK-----ISHAYLFSGPHGTGKTSVAKIFANALNCSHKTDLIEPCQNCIE 81 (718)
T ss_pred HHHHHHCCCCHHHHCCCHHHHHHHHHHHHCCC-----CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHH
T ss_conf 89987289975442285999999999997499-----7505862389986889999999999679999999997702143
Q ss_pred ---------CCCCCCCCCHHHHHHHHHHHH------CCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEE
Q ss_conf ---------125764433467666666410------16378887576169899999999863475100256787652000
Q gi|254780552|r 84 ---------STSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVK 148 (334)
Q Consensus 84 ---------~~s~~~~~~~~dl~~~~~~~~------~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~ 148 (334)
++.|..-.++.+++.+...+. +..|.+|||+|+|++.++++||..+|+
T Consensus 82 ~~~~s~DViEIDAASn~gVDdIReLie~v~y~P~~gkYKVyIIDEvHMLS~~AfNALLKtLEE----------------- 144 (718)
T PRK07133 82 NFNNNLDIIEMDAASNNGVDEIRELRENVKNLPQISKYKIYIIDEVHMLSKSAFNALLKTLEE----------------- 144 (718)
T ss_pred CCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHCC-----------------
T ss_conf 047898737754556688899999999825588778724999966200799999999985027-----------------
Q ss_pred CCCCCCEEEECCCCCCCCCHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 46674005520455433554544201206732645479999987776541210111111123320221015678877754
Q gi|254780552|r 149 INLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228 (334)
Q Consensus 149 ~~~~~f~lI~ATt~~~~l~~~l~sR~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~Gd~R~AlnlLe~ 228 (334)
+.++..||+|||++++|+++++|||. .+.|...+.+++...++.+|..++++++++|+..||+.|+|++|+|+++|++
T Consensus 145 -PP~hvvFILaTTep~KIP~TIlSRCQ-rFdFkrI~~~~I~~~L~~I~~kE~I~~e~eAL~lIA~~a~GSmRDAlSlLDQ 222 (718)
T PRK07133 145 -PPKHVIFILATTDVQKIPLTILSRVQ-RFNFRRISEDVIVHQLENILEKEKIKYEKNALKLIASLASGSLRDALSIADQ 222 (718)
T ss_pred -CCCCCEEEEEECCHHHCCHHHHHCCE-EEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf -98782799970882548487741220-3358889999999999999998599778999999999768848889879999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHC
Q ss_conf 333455415886427787876542100
Q gi|254780552|r 229 VRDFAEVAHAKTITREIADAALLRLAI 255 (334)
Q Consensus 229 v~d~a~~~~~~~i~~~~~~~~l~~~~i 255 (334)
+. ..+.+.|+.+.|.+.+...+.
T Consensus 223 v~----~f~ng~it~k~v~~~~Gl~~~ 245 (718)
T PRK07133 223 VS----IFGNGNITLKNVNELFGLVSN 245 (718)
T ss_pred HH----HHCCCCCCHHHHHHHHCCCCH
T ss_conf 99----854898729999999676557
No 22
>PRK06674 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=1.4e-45 Score=298.27 Aligned_cols=209 Identities=24% Similarity=0.309 Sum_probs=171.8
Q ss_pred HHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCE-EEECCCCCCHHHHHHHHHHHCCCCCC-------------
Q ss_conf 7875078987782397999999999999866146776707-99737885577899999986189853-------------
Q gi|254780552|r 18 DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVNFR------------- 83 (334)
Q Consensus 18 ~~~~lRP~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~-Lf~GPpG~GKTtlA~iiA~~l~~~~~------------- 83 (334)
.-...||++|+|+|||+|++..|+.++...+ ++|. ||+||+||||||+|+++|+.++|.-.
T Consensus 6 LyrkyRP~~F~dvvGQ~~v~~~L~nai~~~r-----i~HAyLF~GprGtGKts~Ari~AkaLnC~~~~~~~pC~~C~~C~ 80 (563)
T PRK06674 6 LYRVFRPQKFEDVVGQEHVTKTLQNALLQEK-----VSHAYLFSGPRGTGKTSIAKVFAKAVNCEHAPVAEPCNECPSCL 80 (563)
T ss_pred HHHHHCCCCHHHHCCHHHHHHHHHHHHHCCC-----CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH
T ss_conf 8876389976552480999999999998499-----65034312899868999999999985799999988776687899
Q ss_pred -----------CCCCCCCCCHHHHHHHHHHH------HCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCE
Q ss_conf -----------12576443346766666641------0163788875761698999999998634751002567876520
Q gi|254780552|r 84 -----------STSGPVIAKAGDLAALLTNL------EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARS 146 (334)
Q Consensus 84 -----------~~s~~~~~~~~dl~~~~~~~------~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~ 146 (334)
++.+..-.++.+++.+...+ .+..|++|||+|+|++.++++||..+|+ |.
T Consensus 81 ~i~~g~~~DviEiDaasn~gVd~IR~i~~~v~~~P~~~~yKV~IIDeah~Lt~~A~NALLKtLEE----------PP--- 147 (563)
T PRK06674 81 GITNGSISDVLEIDAASNNGVDEIRDIRDKVKFAPSAVEYKVYIIDEVHMLSIGAFNALLKTLEE----------PP--- 147 (563)
T ss_pred HHHCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEECHHHCCHHHHHHHHHHHHC----------CC---
T ss_conf 98558998779852555578799999999826488678737999854563799999999998638----------87---
Q ss_pred EECCCCCCEEEECCCCCCCCCHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 00466740055204554335545442012067326454799999877765412101111111233202210156788777
Q gi|254780552|r 147 VKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226 (334)
Q Consensus 147 ~~~~~~~f~lI~ATt~~~~l~~~l~sR~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~Gd~R~AlnlL 226 (334)
++..||+|||++++|+++++|||. .|.|...+.+++...++.+|+.++++++++|+..||+.|+|+||+|+++|
T Consensus 148 -----~~viFILaTtep~ki~~TI~SRCQ-rf~F~ri~~~~i~~rL~~I~~~E~i~~~~~aL~~Ia~~a~GsmRDAlsiL 221 (563)
T PRK06674 148 -----GHVIFILATTEPHKIPPTIISRCQ-RFDFRRISVNDIVERLSTVVTNEGTQVEDEALQIIARAADGGMRDALSLL 221 (563)
T ss_pred -----CCEEEEEECCCHHHCCHHHHHHHE-EEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHH
T ss_conf -----564999965994758478873310-31278899999999999999984999878899999997699788999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 5433345541588642778787654210
Q gi|254780552|r 227 RRVRDFAEVAHAKTITREIADAALLRLA 254 (334)
Q Consensus 227 e~v~d~a~~~~~~~i~~~~~~~~l~~~~ 254 (334)
+++.. .+++.|+.+.+.+.+...+
T Consensus 222 dQ~~s----~~~~~i~~~~v~~~lG~~~ 245 (563)
T PRK06674 222 DQAIS----FSDERVTTEDVLAVTGAVS 245 (563)
T ss_pred HHHHH----HCCCCCCHHHHHHHHCCCC
T ss_conf 99997----1599768999999868998
No 23
>PRK07270 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=2.8e-45 Score=297.17 Aligned_cols=211 Identities=23% Similarity=0.319 Sum_probs=170.7
Q ss_pred HHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCE-EEECCCCCCHHHHHHHHHHHCCCCCC------------
Q ss_conf 57875078987782397999999999999866146776707-99737885577899999986189853------------
Q gi|254780552|r 17 ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVNFR------------ 83 (334)
Q Consensus 17 ~~~~~lRP~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~-Lf~GPpG~GKTtlA~iiA~~l~~~~~------------ 83 (334)
..-...||++|+|||||+|++..|+.+++..+ ++|. ||+||+||||||+|+++|+.++|.-.
T Consensus 4 aLyrkyRP~~F~dvvGQe~i~~~L~nal~~~r-----i~HAyLF~GP~GtGKts~ArifAkaLnC~~~~~~~pC~~C~~C 78 (557)
T PRK07270 4 ALYRKYRSQTFDEMVGQEVVATTLKQAVESGK-----ISHAYLFSGPRGTGKTSAAKIFAKAMNCPNQVDGEPCNNCDIC 78 (557)
T ss_pred HHHHHHCCCCHHHHCCHHHHHHHHHHHHHCCC-----CCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHH
T ss_conf 76766089987671481999999999998599-----5404421089986899999999999579998999988877799
Q ss_pred ------------CCCCCCCCCHHHHHHHHHHH------HCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf ------------12576443346766666641------016378887576169899999999863475100256787652
Q gi|254780552|r 84 ------------STSGPVIAKAGDLAALLTNL------EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSAR 145 (334)
Q Consensus 84 ------------~~s~~~~~~~~dl~~~~~~~------~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~ 145 (334)
++.+..-.++.+++.+...+ ....|++|||+|+|+..++++||..+|+ |.
T Consensus 79 ~~i~~g~~~DviEidaas~~gVd~IRei~~~~~~~P~~~~yKV~IIDEah~Ls~~A~NALLKtLEE----------PP-- 146 (557)
T PRK07270 79 RDITNGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSRATYKVYIIDEVHMLSTGAFNALLKTLEE----------PT-- 146 (557)
T ss_pred HHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCHHHCCHHHHHHHHHHHHC----------CC--
T ss_conf 998758999748734777678899999999842387778838999714453499999989998528----------99--
Q ss_pred EEECCCCCCEEEECCCCCCCCCHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 00046674005520455433554544201206732645479999987776541210111111123320221015678877
Q gi|254780552|r 146 SVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225 (334)
Q Consensus 146 ~~~~~~~~f~lI~ATt~~~~l~~~l~sR~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~Gd~R~Alnl 225 (334)
++..||++||++++|+++++|||. .|+|.+.+.+++...++.+++.++++++++|+..||+.|+|+||+|+++
T Consensus 147 ------~~~vFIL~Ttep~kIl~TI~SRCQ-rf~F~~i~~~~i~~~L~~I~~~E~i~~~~~aL~~Ia~~a~G~mRdAlsi 219 (557)
T PRK07270 147 ------ENVVFILATTELHKIPATILSRVQ-RFEFKSIKTKAIREHLAWILDKEGISFEVEALNLIARRAEGGMRDALSI 219 (557)
T ss_pred ------CCEEEEEEECCHHHCCHHHHHHHH-HCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHH
T ss_conf ------876999984994759288874300-0108889999999999999998399869999999999779968789999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 75433345541588642778787654210
Q gi|254780552|r 226 LRRVRDFAEVAHAKTITREIADAALLRLA 254 (334)
Q Consensus 226 Le~v~d~a~~~~~~~i~~~~~~~~l~~~~ 254 (334)
|+++..| .+++.|+.+.+.+.+...+
T Consensus 220 LdQ~~s~---~~~~~it~~~v~~~~G~~~ 245 (557)
T PRK07270 220 LDQALSL---SQDNQVTIAIAEEITGSIS 245 (557)
T ss_pred HHHHHHC---CCCCCCCHHHHHHHHCCCC
T ss_conf 9999971---7999767999999968998
No 24
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=1.4e-45 Score=298.66 Aligned_cols=210 Identities=26% Similarity=0.321 Sum_probs=173.6
Q ss_pred HHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCE-EEECCCCCCHHHHHHHHHHHCCCCCC------------
Q ss_conf 57875078987782397999999999999866146776707-99737885577899999986189853------------
Q gi|254780552|r 17 ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVNFR------------ 83 (334)
Q Consensus 17 ~~~~~lRP~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~-Lf~GPpG~GKTtlA~iiA~~l~~~~~------------ 83 (334)
....+.||++|+|||||++++..|+.++...+ ++|. ||+||+||||||+|+++|+.++|...
T Consensus 5 ~la~KYRP~~F~dvvGQe~vv~~L~nai~~~r-----l~HAyLFsGprG~GKTt~ArilAk~LnC~~~~~~~PCg~C~sC 79 (560)
T PRK06647 5 GTATKRRPRDFNSLEGQDFVVETLKHSIEKNK-----IANAYIFSGPRGVGKTSSARAFARCLNCVNGPTIMPCGECFSC 79 (560)
T ss_pred HHHHHHCCCCHHHHCCCHHHHHHHHHHHHCCC-----CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHH
T ss_conf 77764289865440394999999999997499-----7743663289987899999999999659999998888788788
Q ss_pred ------------CCCCCCCCCHHHHHHHHHHH------HCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf ------------12576443346766666641------016378887576169899999999863475100256787652
Q gi|254780552|r 84 ------------STSGPVIAKAGDLAALLTNL------EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSAR 145 (334)
Q Consensus 84 ------------~~s~~~~~~~~dl~~~~~~~------~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~ 145 (334)
++.|..-.++.|++.+...+ ++..|++|||+|+|++.++++||..||+ |.
T Consensus 80 ~~i~~g~~~DviEidaasn~~VddIR~l~e~v~~~P~~~~yKV~IIDEahmLt~~A~NALLKtLEE----------PP-- 147 (560)
T PRK06647 80 KSIDNDSSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEE----------PP-- 147 (560)
T ss_pred HHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCHHHCCHHHHHHHHHHHHC----------CC--
T ss_conf 887459998757643645488899999999863287668706999646565599999999998634----------88--
Q ss_pred EEECCCCCCEEEECCCCCCCCCHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 00046674005520455433554544201206732645479999987776541210111111123320221015678877
Q gi|254780552|r 146 SVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225 (334)
Q Consensus 146 ~~~~~~~~f~lI~ATt~~~~l~~~l~sR~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~Gd~R~Alnl 225 (334)
++..||+|||++++|+++++|||. .+.|++++.+++...++.+|+.++++++++|+..||+.|+|++|+|+++
T Consensus 148 ------~~~~FILaTte~~KI~~TI~SRCQ-~f~Fk~i~~~~I~~~L~~I~~~E~i~~e~~AL~lIa~~a~Gs~RDalsl 220 (560)
T PRK06647 148 ------PYIVFIFATTEVHKLPATIKSRCQ-HFNFRLLSLEKIYEMLKKVCLEDDIKYEDEALKWIAYKSGGSVRDAYTL 220 (560)
T ss_pred ------CCEEEEEECCCHHHCHHHHHHHHE-EEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHH
T ss_conf ------755999977994768489996510-4105559999999999999986798879999999999778958889999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 75433345541588642778787654210
Q gi|254780552|r 226 LRRVRDFAEVAHAKTITREIADAALLRLA 254 (334)
Q Consensus 226 Le~v~d~a~~~~~~~i~~~~~~~~l~~~~ 254 (334)
|+++. +.+++.|+.+.+.+.+...+
T Consensus 221 ldq~i----~~~~~~i~~~~v~~~lG~~~ 245 (560)
T PRK06647 221 FDQIV----SFSNSDITLEQIRSKMGLTS 245 (560)
T ss_pred HHHHH----HCCCCCCCHHHHHHHHCCCC
T ss_conf 99999----60799778999999868988
No 25
>PRK05648 DNA polymerase III subunits gamma and tau; Reviewed
Probab=100.00 E-value=1.4e-45 Score=297.38 Aligned_cols=208 Identities=24% Similarity=0.285 Sum_probs=176.6
Q ss_pred HHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCE-EEECCCCCCHHHHHHHHHHHCCCCCCCC-----------
Q ss_conf 7875078987782397999999999999866146776707-9973788557789999998618985312-----------
Q gi|254780552|r 18 DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVNFRST----------- 85 (334)
Q Consensus 18 ~~~~lRP~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~-Lf~GPpG~GKTtlA~iiA~~l~~~~~~~----------- 85 (334)
...+.||++|+|+|||+|++..|+.++...+ ++|. ||+|++||||||+|||+||.+||+-...
T Consensus 6 lark~rp~~f~~~~gq~~~~~~l~~~~~~~~-----~~~a~l~~g~rg~gkt~~ar~~ak~lnc~~~~~~~pc~~c~~c~ 80 (705)
T PRK05648 6 LARKWRPRSFREMVGQTHVLKALINALDNQR-----LHHAYLFTGTRGVGKTTIARIIAKCLNCETGVSSTPCGECSVCR 80 (705)
T ss_pred HHHHHCCCCHHHHCCHHHHHHHHHHHHHCCC-----CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH
T ss_conf 6553178757663281999999999997098-----63046500789888989999999986778999889787760046
Q ss_pred -------------CCCCCCCHHHHHHHHHHHH------CCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCE
Q ss_conf -------------5764433467666666410------163788875761698999999998634751002567876520
Q gi|254780552|r 86 -------------SGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARS 146 (334)
Q Consensus 86 -------------s~~~~~~~~dl~~~~~~~~------~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~ 146 (334)
.|-+-.++.|++.++.+.. +..|++|||+|+|++..+++||..+|+
T Consensus 81 ~i~~~~~~d~~e~d~as~~~v~~~r~~~~~~~~~p~~~~~kv~~idevhmls~~~fnallktlee--------------- 145 (705)
T PRK05648 81 EIDEGRFVDLIEVDAASRTKVEDTRELLDNVQYAPTRGRYKVYLIDEVHMLSSHSFNALLKTLEE--------------- 145 (705)
T ss_pred HHHCCCCCCEEEECCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEEHHHHCCHHHHHHHHHHCCC---------------
T ss_conf 66248977634451554478899999998555177677457999842654179999999874047---------------
Q ss_pred EECCCCCCEEEECCCCCCCCCHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 00466740055204554335545442012067326454799999877765412101111111233202210156788777
Q gi|254780552|r 147 VKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226 (334)
Q Consensus 147 ~~~~~~~f~lI~ATt~~~~l~~~l~sR~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~Gd~R~AlnlL 226 (334)
+.+++.||+|||+++||+..++||| ..|.|+.++.++|...+..++..+++.++++|+..||+.++|+||+|+++|
T Consensus 146 ---pp~~v~f~~att~~~k~p~t~~src-~~~~~~~~~~~~~~~~l~~~~~~e~~~~~~~~~~~~~~~~~g~~rd~ls~~ 221 (705)
T PRK05648 146 ---PPPHVKFLLATTDPQKLPVTILSRC-LQFSLKNMSPERVVEHLSHVLGAENVPFEEDALWLLGRAADGSMRDAMSLT 221 (705)
T ss_pred ---CCCCEEEEEECCCHHHCCHHHHHHH-HHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHH
T ss_conf ---9754599984287353758999766-430236899999999999999975997789999999997489677799999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 543334554158864277878765421
Q gi|254780552|r 227 RRVRDFAEVAHAKTITREIADAALLRL 253 (334)
Q Consensus 227 e~v~d~a~~~~~~~i~~~~~~~~l~~~ 253 (334)
++ +.+.|.+.|+.+.|..+|..+
T Consensus 222 dq----~~~~~~~~~~~~~v~~mlg~~ 244 (705)
T PRK05648 222 DQ----AIAFGEGKVLAADVRAMLGTL 244 (705)
T ss_pred HH----HHHCCCCCCCHHHHHHHHCCC
T ss_conf 99----986068840799999985888
No 26
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=4.2e-45 Score=294.95 Aligned_cols=209 Identities=23% Similarity=0.257 Sum_probs=173.0
Q ss_pred HHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCE-EEECCCCCCHHHHHHHHHHHCCCCCC------------
Q ss_conf 57875078987782397999999999999866146776707-99737885577899999986189853------------
Q gi|254780552|r 17 ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVNFR------------ 83 (334)
Q Consensus 17 ~~~~~lRP~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~-Lf~GPpG~GKTtlA~iiA~~l~~~~~------------ 83 (334)
......||++|+|+|||+++++.|+.++...+ ++|. ||+||+||||||+|+++|+.++|.-.
T Consensus 3 ~LarKYRP~~F~evIGQe~iv~~L~nAi~~~R-----l~HAYLFsGPrGvGKTt~ArifAkaLnC~~~~~~~PCg~C~sC 77 (523)
T PRK08451 3 ALALKYRPKHFDELIGQESVSKTLSLALDNNR-----LAHAYLFSGLRGSGKTSSARIFSRALVCEQGPSSTPCGTCAQC 77 (523)
T ss_pred HHHHHHCCCCHHHCCCCHHHHHHHHHHHHCCC-----CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHH
T ss_conf 14442089965440494999999999998599-----6715875789986889999999999759999998988878889
Q ss_pred ------------CCCCCCCCCHHHHHHHHHHH------HCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf ------------12576443346766666641------016378887576169899999999863475100256787652
Q gi|254780552|r 84 ------------STSGPVIAKAGDLAALLTNL------EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSAR 145 (334)
Q Consensus 84 ------------~~s~~~~~~~~dl~~~~~~~------~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~ 145 (334)
++.|..-.++.+++.+.... ++..|++|||+|+|++.++++||..+|+
T Consensus 78 ~~i~~g~hpDViEiDaasn~gID~IReLie~~~~~P~~gryKV~IIDEah~Lt~~A~NALLKTLEE-------------- 143 (523)
T PRK08451 78 QAALEGRHIDIIEMDAASNRGIDDIRNLIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEE-------------- 143 (523)
T ss_pred HHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHCCC--------------
T ss_conf 998648999855105533368999999999723588679727999826030489999999997038--------------
Q ss_pred EEECCCCCCEEEECCCCCCCCCHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 00046674005520455433554544201206732645479999987776541210111111123320221015678877
Q gi|254780552|r 146 SVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225 (334)
Q Consensus 146 ~~~~~~~~f~lI~ATt~~~~l~~~l~sR~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~Gd~R~Alnl 225 (334)
+.++..||+|||++++|+++++|||. .++|.+.+.+++...++.++.+++++++++|+..||+.|+|++|+|+++
T Consensus 144 ----PP~~vvFILaTTep~KLp~TIlSRCQ-~f~Fk~I~~~~I~~~L~~I~~~E~i~~e~~AL~~IA~~a~GslRDalsl 218 (523)
T PRK08451 144 ----PPSYVKFILATTDPLKLPATILSRTQ-HFRFKQIPQNSIISHLKTILNKEGVSYEPEALEILARSGSGSLRDTLTL 218 (523)
T ss_pred ----CCCCCEEEEECCCHHHCHHHHHHHHH-CCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHH
T ss_conf ----98783799975994768488874203-1103379999999999999998399879999999999778948689879
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 7543334554158864277878765421
Q gi|254780552|r 226 LRRVRDFAEVAHAKTITREIADAALLRL 253 (334)
Q Consensus 226 Le~v~d~a~~~~~~~i~~~~~~~~l~~~ 253 (334)
|+++ .+.+++.|+.+.+..++...
T Consensus 219 LdQ~----i~~~~~~i~~~~v~~~lG~~ 242 (523)
T PRK08451 219 LDQA----IIFCKNAITESKVADMLGLL 242 (523)
T ss_pred HHHH----HHHCCCCCCHHHHHHHHCCC
T ss_conf 9999----98479987799999985888
No 27
>PRK08770 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=2.8e-45 Score=296.36 Aligned_cols=209 Identities=21% Similarity=0.307 Sum_probs=177.4
Q ss_pred HHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCE-EEECCCCCCHHHHHHHHHHHCCCCCCCC-----------
Q ss_conf 7875078987782397999999999999866146776707-9973788557789999998618985312-----------
Q gi|254780552|r 18 DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVNFRST----------- 85 (334)
Q Consensus 18 ~~~~lRP~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~-Lf~GPpG~GKTtlA~iiA~~l~~~~~~~----------- 85 (334)
...+.||++|+|+|||+|+++.|+.++...+ ++|. ||+|++||||||+|||+||.+||+-...
T Consensus 6 ~a~k~rp~~f~~~~gq~~~~~~l~~~~~~~~-----~~~a~lf~g~rg~gkt~~ar~~a~~lnc~~~~~~~pc~~c~~c~ 80 (663)
T PRK08770 6 LARKWRPKRFAELVGQEHVVRALSNALDSGR-----VHHAFLFTGTRGVGKTTIARIFAKSLNCETGTSADPCGQCPACL 80 (663)
T ss_pred HHHHHCCCCHHHHCCCHHHHHHHHHHHHCCC-----CCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH
T ss_conf 7755088746452285999999999997099-----74047622799888889999999986789999999787787789
Q ss_pred -------------CCCCCCCHHHHHHHHHHHH------CCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCE
Q ss_conf -------------5764433467666666410------163788875761698999999998634751002567876520
Q gi|254780552|r 86 -------------SGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARS 146 (334)
Q Consensus 86 -------------s~~~~~~~~dl~~~~~~~~------~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~ 146 (334)
.|-+-.++.|++.++.+.. +..|++|||+|+|++..+++||+.+|+
T Consensus 81 ~i~~~~~~d~~e~daas~~~v~~~r~~~~~~~~~p~~~~~kvy~idevhmls~~~fna~lktlee--------------- 145 (663)
T PRK08770 81 DIDAGRYIDLLEIDAASNTGVDDVREVIENAQYMPSRGKFKVYLIDEVHMLSKAAFNALLKTLEE--------------- 145 (663)
T ss_pred HHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECHHHCCHHHHHHHHHHHCC---------------
T ss_conf 88548988658864676588899999998443588777436999700433289999999874027---------------
Q ss_pred EECCCCCCEEEECCCCCCCCCHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 00466740055204554335545442012067326454799999877765412101111111233202210156788777
Q gi|254780552|r 147 VKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226 (334)
Q Consensus 147 ~~~~~~~f~lI~ATt~~~~l~~~l~sR~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~Gd~R~AlnlL 226 (334)
+.+++.||+|||+++||+..++||| .+|.|+..+.+++...++.++..+++.++++|+..||+.++|+||+|+++|
T Consensus 146 ---pp~~v~f~~att~~~k~p~t~~src-~~f~~~~~~~~~~~~~l~~~~~~e~~~~~~~~~~~~~~~~~gs~rd~lsl~ 221 (663)
T PRK08770 146 ---PPEHVKFLLATTDPQKLPVTVLSRC-LQFNLKRLDEDQIQGQMTRILAAEQIESDPSAIVQLSKAADGSLRDGLSLL 221 (663)
T ss_pred ---CCCCEEEEEECCCHHHCCHHHHHHH-HHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHH
T ss_conf ---8644289985487333748999888-763437799999999999999983997699999999997478567788899
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 5433345541588642778787654210
Q gi|254780552|r 227 RRVRDFAEVAHAKTITREIADAALLRLA 254 (334)
Q Consensus 227 e~v~d~a~~~~~~~i~~~~~~~~l~~~~ 254 (334)
++ |.+.+++.|+.+.|..+|..++
T Consensus 222 ~q----~~~~~~~~~~~~~v~~mlg~~~ 245 (663)
T PRK08770 222 DQ----AIAYAGGALREDVVRTMLGTVD 245 (663)
T ss_pred HH----HHHHCCCCCCHHHHHHHHCCCC
T ss_conf 99----9986689768999999848888
No 28
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=1.4e-44 Score=292.03 Aligned_cols=207 Identities=23% Similarity=0.285 Sum_probs=168.0
Q ss_pred HHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCE-EEECCCCCCHHHHHHHHHHHCCCCC-------------C
Q ss_conf 7875078987782397999999999999866146776707-9973788557789999998618985-------------3
Q gi|254780552|r 18 DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVNF-------------R 83 (334)
Q Consensus 18 ~~~~lRP~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~-Lf~GPpG~GKTtlA~iiA~~l~~~~-------------~ 83 (334)
+-.+.||++|+|||||+|+++.|+.++...+ ++|. ||+||.||||||+|||+|+.+||.- .
T Consensus 5 LyrkyRP~~F~eviGQe~v~~~L~~Ai~~gr-----i~HAYLFsGprG~GKTt~ARilAkaLNC~~~~~~~PCg~C~sC~ 79 (775)
T PRK07764 5 LYRRYRPATFAEVVGQEHVTEPLSTALDSGR-----INHAYLFSGPRGCGKTSSARILARSLNCAQGPTSTPCGVCDSCV 79 (775)
T ss_pred HHHHHCCCCHHHHCCCHHHHHHHHHHHHCCC-----CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH
T ss_conf 6655078876662285999999999998199-----76337623788878889999999996689999989888876378
Q ss_pred CCC-C------------CCCCCHHHHHHHHHHH------HCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 125-7------------6443346766666641------01637888757616989999999986347510025678765
Q gi|254780552|r 84 STS-G------------PVIAKAGDLAALLTNL------EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSA 144 (334)
Q Consensus 84 ~~s-~------------~~~~~~~dl~~~~~~~------~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a 144 (334)
.+. + -+-.++.|++.+.... .+..|++|||+|+|++..+++||+.+|+
T Consensus 80 ~i~~g~~~~~DviEiDAAS~~gVddiReL~e~~~y~P~~~ryKVyIIDEaHmls~~afNALLKtLEE------------- 146 (775)
T PRK07764 80 ALAPGGPGSLDVVEIDAASHGGVDDARELRERAFFAPAQSRYRIFIIDEAHMVTTAGFNALLKIVEE------------- 146 (775)
T ss_pred HHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECHHHHCHHHHHHHHHHHCC-------------
T ss_conf 8863898888668731565568899999998547687678635999853544079999999886227-------------
Q ss_pred CEEECCCCCCEEEECCCCCCCCCHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 20004667400552045543355454420120673264547999998777654121011111112332022101567887
Q gi|254780552|r 145 RSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGR 224 (334)
Q Consensus 145 ~~~~~~~~~f~lI~ATt~~~~l~~~l~sR~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~Gd~R~Aln 224 (334)
+.++..||+|||+++||+..++|||. +|.|+.++.++|...+.++|++++++++++++..|++.++|++|++|+
T Consensus 147 -----PP~hvvFIlaTTep~kip~TI~SRcq-~f~Fr~i~~~~~~~~l~~i~~~E~i~~~~~al~li~r~~~Gs~RDalS 220 (775)
T PRK07764 147 -----PPEHLIFIFATTEPEKVIGTIRSRTH-HYPFRLVPPGTMRPYLERICAQEGVVVDDAVLPLVIRAGGGSPRDTLS 220 (775)
T ss_pred -----CCCCEEEEEECCCHHHCCHHHHHHCC-CCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHH
T ss_conf -----86462799954873547167764102-345266999999999999999839987989999999982896676899
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 775433345541588642778787654
Q gi|254780552|r 225 LLRRVRDFAEVAHAKTITREIADAALL 251 (334)
Q Consensus 225 lLe~v~d~a~~~~~~~i~~~~~~~~l~ 251 (334)
+|+++..+ .+.+.|+.+.+...|.
T Consensus 221 ~ldQl~a~---~~~~~v~~~~a~~llG 244 (775)
T PRK07764 221 VLDQLLAG---AGDDGVTYERAVALLG 244 (775)
T ss_pred HHHHHHHC---CCCCCEEHHHHHHHHC
T ss_conf 99999840---4888410999999858
No 29
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=1.5e-44 Score=291.93 Aligned_cols=212 Identities=23% Similarity=0.282 Sum_probs=173.7
Q ss_pred HHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCC-EEEECCCCCCHHHHHHHHHHHCCCCC-------------
Q ss_conf 5787507898778239799999999999986614677670-79973788557789999998618985-------------
Q gi|254780552|r 17 ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH-VLFVGPPGLGKTTLAQVVARELGVNF------------- 82 (334)
Q Consensus 17 ~~~~~lRP~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h-~Lf~GPpG~GKTtlA~iiA~~l~~~~------------- 82 (334)
..-...||++|+|+|||+++++.|+.++...+ ++| .||+||+|+||||+|+++|+.++|.-
T Consensus 5 alyrKYRPk~F~eIIGQe~iv~~L~nAI~~~R-----iaHAYLFsGPrGvGKTTlArifAkaLnC~~~~~~dpCg~C~sC 79 (613)
T PRK05896 5 TFYRKYRPHNFKQIIGQELIKKILVNAILNNK-----LTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVC 79 (613)
T ss_pred CHHHHCCCCCHHHHCCCHHHHHHHHHHHHCCC-----CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHH
T ss_conf 12450179976552382999999999998499-----7622775589984889999999999669999999988888789
Q ss_pred -----------CCCCCCCCCCHHHHHHHHHHH------HCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf -----------312576443346766666641------016378887576169899999999863475100256787652
Q gi|254780552|r 83 -----------RSTSGPVIAKAGDLAALLTNL------EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSAR 145 (334)
Q Consensus 83 -----------~~~s~~~~~~~~dl~~~~~~~------~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~ 145 (334)
.++.+..-.++.+++.+...+ +...|.+|||+|+|++.++++||..+|+ |
T Consensus 80 ~~I~~g~h~DviEIdaasn~gIDeIReLie~~~~~P~~gkyKV~IIDEah~Ln~~AaNALLKtLEE----------P--- 146 (613)
T PRK05896 80 ESINTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEE----------P--- 146 (613)
T ss_pred HHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCHHHCCHHHHHHHHHHCCC----------C---
T ss_conf 998569999868840655578899999999708587579945999816221799999999985348----------9---
Q ss_pred EEECCCCCCEEEECCCCCCCCCHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 00046674005520455433554544201206732645479999987776541210111111123320221015678877
Q gi|254780552|r 146 SVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225 (334)
Q Consensus 146 ~~~~~~~~f~lI~ATt~~~~l~~~l~sR~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~Gd~R~Alnl 225 (334)
.++..||++||++++|+++++|||. .+.|.+.+.+++...++.+++++++.++++|+..||+.|+|++|+|+++
T Consensus 147 -----P~~viFIL~Ttep~KLLpTIlSRCQ-rf~Fkri~~~~I~~~L~~I~~kE~i~ie~~AL~~Ia~~adGs~RDAlsl 220 (613)
T PRK05896 147 -----PKHVVFIFATTEFQKIPLTIISRCQ-RYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADGSLRDGLSI 220 (613)
T ss_pred -----CCCCEEEEEECCHHHCCHHHHHCCC-CEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHH
T ss_conf -----8783799982881549376640355-0017889989999999999997399878999999999768848789889
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHCC
Q ss_conf 7543334554158864277878765421000
Q gi|254780552|r 226 LRRVRDFAEVAHAKTITREIADAALLRLAID 256 (334)
Q Consensus 226 Le~v~d~a~~~~~~~i~~~~~~~~l~~~~id 256 (334)
|+++..| +.+.|+.+++.+.+...+.+
T Consensus 221 LdQ~~~~----~~~~it~~~v~~~~g~~~~~ 247 (613)
T PRK05896 221 LDQLSTF----KNKKIDIEDINKTFGLVDNN 247 (613)
T ss_pred HHHHHHH----CCCCCCHHHHHHHHCCCCHH
T ss_conf 9999983----56886299999996777689
No 30
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=100.00 E-value=3.9e-44 Score=289.41 Aligned_cols=211 Identities=26% Similarity=0.349 Sum_probs=175.1
Q ss_pred HHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCE-EEECCCCCCHHHHHHHHHHHCCCCC-------------
Q ss_conf 57875078987782397999999999999866146776707-9973788557789999998618985-------------
Q gi|254780552|r 17 ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVNF------------- 82 (334)
Q Consensus 17 ~~~~~lRP~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~-Lf~GPpG~GKTtlA~iiA~~l~~~~------------- 82 (334)
......||++|+|+|||+|+++.|+.++...+ ++|. ||+||.||||||+||++|+.+||.-
T Consensus 5 ~L~rKyRP~~F~evvGQe~v~~~L~nal~~~r-----i~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~C 79 (515)
T COG2812 5 VLARKYRPKTFDDVVGQEHVVKTLSNALENGR-----IAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISC 79 (515)
T ss_pred HHHHHHCCCCHHHHCCCHHHHHHHHHHHHHCC-----CHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHH
T ss_conf 89988583007776364899999999998084-----2333651377776710499999999568898777722531666
Q ss_pred CCCC-CC----------CCCCHHHHHHHHHHHH------CCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 3125-76----------4433467666666410------16378887576169899999999863475100256787652
Q gi|254780552|r 83 RSTS-GP----------VIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSAR 145 (334)
Q Consensus 83 ~~~s-~~----------~~~~~~dl~~~~~~~~------~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~ 145 (334)
..++ |. +-.++.|++.+..+.. +..|++|||+|+|++.++++||..+|+
T Consensus 80 k~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEE-------------- 145 (515)
T COG2812 80 KEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEE-------------- 145 (515)
T ss_pred HHHHCCCCCCCHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCEEEEEECHHHHHHHHHHHHHCCCCC--------------
T ss_conf 865148864101136444548679999998724688666641899831876437888887511136--------------
Q ss_pred EEECCCCCCEEEECCCCCCCCCHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 00046674005520455433554544201206732645479999987776541210111111123320221015678877
Q gi|254780552|r 146 SVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225 (334)
Q Consensus 146 ~~~~~~~~f~lI~ATt~~~~l~~~l~sR~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~Gd~R~Alnl 225 (334)
+.+++.||+|||+++|+++.++|||. .+.|+.++.+++...+..++..++++++++|+..||+.|+|++|+++++
T Consensus 146 ----PP~hV~FIlATTe~~Kip~TIlSRcq-~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~Gs~RDalsl 220 (515)
T COG2812 146 ----PPSHVKFILATTEPQKIPNTILSRCQ-RFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEGSLRDALSL 220 (515)
T ss_pred ----CCCCEEEEEECCCCCCCCHHHHHCCC-CCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHH
T ss_conf ----86674899853886768404552122-0222579999999999999874487547999999999828974567778
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHC
Q ss_conf 754333455415886427787876542100
Q gi|254780552|r 226 LRRVRDFAEVAHAKTITREIADAALLRLAI 255 (334)
Q Consensus 226 Le~v~d~a~~~~~~~i~~~~~~~~l~~~~i 255 (334)
|+ ++...+.+.|+.+.+..++.....
T Consensus 221 LD----q~i~~~~~~It~~~v~~~lG~~~~ 246 (515)
T COG2812 221 LD----QAIAFGEGEITLESVRDMLGLTDI 246 (515)
T ss_pred HH----HHHHCCCCCCCHHHHHHHHCCCCH
T ss_conf 99----999706776569999999688778
No 31
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=100.00 E-value=9.7e-44 Score=287.00 Aligned_cols=210 Identities=28% Similarity=0.350 Sum_probs=170.5
Q ss_pred CCCHHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCC-----CCCCCCC
Q ss_conf 12057875078987782397999999999999866146776707997378855778999999861898-----5312576
Q gi|254780552|r 14 QEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN-----FRSTSGP 88 (334)
Q Consensus 14 ~~~~~~~~lRP~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~-----~~~~s~~ 88 (334)
..+.|+++.||++|+|++||+++++.++.+++. ..+||+||||||||||||+|+++|+++.++ +.++|++
T Consensus 2 ~~~lW~eKYRP~~l~di~g~~~~~~~L~~~i~~-----~~~phlLf~GppG~GKTt~a~~la~~l~~~~~~~~~lelnas 76 (318)
T PRK00440 2 MEEIWVEKYRPRSLDEVVGQEEIVERLKSFVKE-----KNMPHLLFAGPPGTGKTTAALALARELYGEYWRENFLELNAS 76 (318)
T ss_pred CHHHHHHCCCCCCHHHHCCCHHHHHHHHHHHHC-----CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCC
T ss_conf 423564601989899941969999999999987-----998669888959988999999999997698643476895164
Q ss_pred CCCCHHHHHHHHHH---H---H--CCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECC
Q ss_conf 44334676666664---1---0--16378887576169899999999863475100256787652000466740055204
Q gi|254780552|r 89 VIAKAGDLAALLTN---L---E--DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAAT 160 (334)
Q Consensus 89 ~~~~~~dl~~~~~~---~---~--~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~AT 160 (334)
...+..+++..+.. . + ...|+||||+|++++.+|++|+..||.+.- ...||..|
T Consensus 77 d~r~id~vr~~i~~~~~~~~~~~~~~kiiiiDE~d~l~~~aq~aL~~~mE~~~~------------------~~~fil~~ 138 (318)
T PRK00440 77 DERGIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQ------------------TTRFILSC 138 (318)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCC------------------CCEEEEEC
T ss_conf 566717899999999972677899738999868553225567888764310566------------------62588634
Q ss_pred CCCCCCCHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 55433554544201206732645479999987776541210111111123320221015678877754333455415886
Q gi|254780552|r 161 TRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKT 240 (334)
Q Consensus 161 t~~~~l~~~l~sR~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~Gd~R~AlnlLe~v~d~a~~~~~~~ 240 (334)
|.+.++.+|++|||. .++|.+++.+++...++.+|++++++++++++..|+..|+||+|.|+|+||.+. ...+.
T Consensus 139 n~~~kii~~i~SRc~-~i~f~~~~~~~i~~~L~~I~~~E~i~~~~~~l~~i~~~s~gdlR~ain~Lq~~~-----~~~~~ 212 (318)
T PRK00440 139 NYSSKIIDPIQSRCA-VFRFSPLPKEAVIERLRYIAKNEGLEITDDALEAIYYVSEGDMRKAINALQAAA-----ATGKE 212 (318)
T ss_pred CCCCCCCCCHHHHHE-EEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHH-----HCCCC
T ss_conf 883337615565510-111578999999999999999859998999999999864998999999999999-----74898
Q ss_pred CCHHHHHHHHHH
Q ss_conf 427787876542
Q gi|254780552|r 241 ITREIADAALLR 252 (334)
Q Consensus 241 i~~~~~~~~l~~ 252 (334)
|+.+.+.+.+..
T Consensus 213 it~~~v~~~~~~ 224 (318)
T PRK00440 213 VTEEAVYKITGT 224 (318)
T ss_pred CCHHHHHHHHCC
T ss_conf 789999999769
No 32
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=100.00 E-value=1.5e-43 Score=285.84 Aligned_cols=191 Identities=22% Similarity=0.292 Sum_probs=154.8
Q ss_pred CHHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCC-----CCCCCCCC
Q ss_conf 0578750789877823979999999999998661467767079973788557789999998618985-----31257644
Q gi|254780552|r 16 DADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF-----RSTSGPVI 90 (334)
Q Consensus 16 ~~~~~~lRP~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~~-----~~~s~~~~ 90 (334)
-.|+++.||++|+|++||+++++.|+.+++. ..+||+||||||||||||+|+++|++++++. ...++..+
T Consensus 3 ~lWveKYRP~~~~dvvGq~~i~~~L~~~~~~-----~~~phlLf~GPpG~GKTt~A~~lA~~l~~~~~~~~~~~~nasd~ 77 (337)
T PRK12402 3 MLWTEKYRPSLFEDILGQESVVDHLSALAAS-----GNLPHLVVYGPSGSGKTAAVRALARELYGDPWENNFTYFNVSDF 77 (337)
T ss_pred CCCCCCCCCCCHHHHCCCHHHHHHHHHHHHC-----CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCEECCCCC
T ss_conf 8532141889799803979999999999977-----99876988892984899999999999679975678333116531
Q ss_pred -C------------------------CHHH-HHHHH---HHH----HCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCC
Q ss_conf -3------------------------3467-66666---641----0163788875761698999999998634751002
Q gi|254780552|r 91 -A------------------------KAGD-LAALL---TNL----EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137 (334)
Q Consensus 91 -~------------------------~~~d-l~~~~---~~~----~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~ 137 (334)
. ...| ++.+. .+. ....|+++||+|++++.+|.+|+..||++.
T Consensus 78 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~i~~ii~~~a~~~p~~~~~KiiIlDEad~lt~~Aq~aLlk~lEe~~---- 153 (337)
T PRK12402 78 FDQGKKYLVEDPRFAHFYDDPKRKYKSVIDNFKHILKEYASMRPLSADYKLILFDNAEALREDAQQALRRIMERYS---- 153 (337)
T ss_pred CCCCCCEEECCCCHHHHHCCHHHCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCC----
T ss_conf 1356400101664234420153327737899999999986148877880499970713179999999998874088----
Q ss_pred CCCCCCCCEEECCCCCCEEEECCCCCCCCCHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCC
Q ss_conf 56787652000466740055204554335545442012067326454799999877765412101111111233202210
Q gi|254780552|r 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRG 217 (334)
Q Consensus 138 ~~~~~~a~~~~~~~~~f~lI~ATt~~~~l~~~l~sR~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~G 217 (334)
+...||++||++.++.+|++|||. .++|.+++.+++...++++|++++++++++++..||+.|+|
T Consensus 154 --------------~~~~fIl~t~~~~~ii~tI~SRC~-~i~F~~~s~~~i~~~L~~I~~~E~i~~~~~~l~~ia~~s~G 218 (337)
T PRK12402 154 --------------ETCRFIFSTTQPSKLIPPIRSRCL-PLFFRPVPDDEIRSVLESIAAAEGVEISDDGLDLIAYYAEG 218 (337)
T ss_pred --------------CCEEEEEECCCCCCCCHHHHHHCE-EEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCC
T ss_conf --------------766998723864447524776244-54358989999999999999984999899999999998699
Q ss_pred CHHHHHHHHHHHH
Q ss_conf 1567887775433
Q gi|254780552|r 218 TPRIAGRLLRRVR 230 (334)
Q Consensus 218 d~R~AlnlLe~v~ 230 (334)
|+|.|+|+||.+.
T Consensus 219 dlR~ain~Lq~~~ 231 (337)
T PRK12402 219 DLRKAILTLQLAA 231 (337)
T ss_pred CHHHHHHHHHHHH
T ss_conf 8999999999998
No 33
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family; InterPro: IPR014252 This entry shows some relation to the widely distributed ATP-dependent protease La, also called Lon or LonA (IPR004815 from INTERPRO), but is more closely related to LonB (IPR014251 from INTERPRO), a LonA paralog found only in endospore-forming bacteria. Proteins in this entry are unassigned peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SJ). They are restricted to a subset of endospore-forming species, and probably participate in the program of endospore formation. We propose the designation LonC..
Probab=100.00 E-value=1.5e-43 Score=285.77 Aligned_cols=230 Identities=31% Similarity=0.396 Sum_probs=170.7
Q ss_pred HHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHC----------CCCCCCCC
Q ss_conf 57875078987782397999999999999866146776707997378855778999999861----------89853125
Q gi|254780552|r 17 ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL----------GVNFRSTS 86 (334)
Q Consensus 17 ~~~~~lRP~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l----------~~~~~~~s 86 (334)
...+.|||++|+|+|||+.+++.|- +|.-..-+.|+|||||||+||||.||+.-.+. +.+|+++.
T Consensus 144 s~~slLRP~~f~EiVGQerAI~aLl-----aK~aSPfPQHiiLYGPPGVGKTTaARl~LEe~K~~~~tPF~~DA~FvEVD 218 (616)
T TIGR02903 144 SIQSLLRPRAFSEIVGQERAIKALL-----AKLASPFPQHIILYGPPGVGKTTAARLALEEAKKLKNTPFAEDAPFVEVD 218 (616)
T ss_pred HHHHHCCCCCCCCCCCHHHHHHHHH-----HHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEC
T ss_conf 9998628766764333468999999-----76318886607855733884789999987621368744761137857515
Q ss_pred CCCC--------------------CC-HHHHH---------HHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCC
Q ss_conf 7644--------------------33-46766---------666641016378887576169899999999863475100
Q gi|254780552|r 87 GPVI--------------------AK-AGDLA---------ALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 (334)
Q Consensus 87 ~~~~--------------------~~-~~dl~---------~~~~~~~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i 136 (334)
|..+ ++ ..||+ ++++.++ |.|||||||-+|..--|+-||.++||-+|.-
T Consensus 219 GtTLRWDPREvTNPLLGSVHDPIYQGa~RDLAE~GvPEPk~GLVT~AH-GGvLFIDEIGELD~lLQnKLLKVLEDKrV~F 297 (616)
T TIGR02903 219 GTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKLGLVTDAH-GGVLFIDEIGELDPLLQNKLLKVLEDKRVEF 297 (616)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCC-CCEEEEECHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf 762667741014776776257655676401104787989898710047-7567650211222787632444322643665
Q ss_pred CC-CCCCCCCEEECC---------CCCCEEEECCCCCC-CCCHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHH
Q ss_conf 25-678765200046---------67400552045543-35545442012067326454799999877765412101111
Q gi|254780552|r 137 MV-GEGPSARSVKIN---------LSRFTLIAATTRVG-LLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTD 205 (334)
Q Consensus 137 ~~-~~~~~a~~~~~~---------~~~f~lI~ATt~~~-~l~~~l~sR~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~ 205 (334)
-- --.|+-..+.-- ..+|.||||||+-| .||+||||||+-++ |+|++++|+..|+.++|+++|+.+.+
T Consensus 298 ~SsYYDpdD~NvPkYIK~lFe~GAPADFvLIGATTr~P~eINpALRSRCaEvf-FePL~p~dI~~Iv~~AA~klnv~L~~ 376 (616)
T TIGR02903 298 SSSYYDPDDENVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVF-FEPLTPEDIKEIVLNAAEKLNVKLAE 376 (616)
T ss_pred EECCCCCCCCCCCHHHHHHHCCCCCCCEEEECCCCCCHHHCCHHHHCCCCEEE-CCCCCHHHHHHHHHHHHHHCCCCCCC
T ss_conf 32124875378655888852268882568726615882440512330143132-17988789999999988861770003
Q ss_pred HHHHHHHCCC-CCCHHHHHHHHHHHHHHHHHHC-------CC-CCCHHHHHHHHHHHHC
Q ss_conf 1112332022-1015678877754333455415-------88-6427787876542100
Q gi|254780552|r 206 EAACEIAMRS-RGTPRIAGRLLRRVRDFAEVAH-------AK-TITREIADAALLRLAI 255 (334)
Q Consensus 206 ~al~~ia~~s-~Gd~R~AlnlLe~v~d~a~~~~-------~~-~i~~~~~~~~l~~~~i 255 (334)
++-..||++. .| |.|+|+|-=+.-++.... +. +|+.+++.++++.-.+
T Consensus 377 gV~e~Ia~YTieG--RkAvnILAD~Yg~~ly~~~~~~~~~d~~~I~~~dv~evv~~sRl 433 (616)
T TIGR02903 377 GVEELIARYTIEG--RKAVNILADVYGYALYKKAEALKEEDKVTITADDVKEVVQISRL 433 (616)
T ss_pred CHHHHHHHCCCCC--HHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEHHHHHHHHHHCCC
T ss_conf 6487872147131--12223465467676530455567777426618677767753045
No 34
>PRK04195 replication factor C large subunit; Provisional
Probab=100.00 E-value=1.1e-40 Score=268.36 Aligned_cols=273 Identities=18% Similarity=0.220 Sum_probs=191.8
Q ss_pred HHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHH
Q ss_conf 57875078987782397999999999999866146776707997378855778999999861898531257644334676
Q gi|254780552|r 17 ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDL 96 (334)
Q Consensus 17 ~~~~~lRP~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~~~~~~~~dl 96 (334)
+++++.||++|+|+|||+++++.++.|+++......+.+++||+|||||||||+|+++|+++|+++.++||+...+..++
T Consensus 3 ~WveKYRPk~~~divg~~~~v~~l~~Wl~~w~~g~~~~k~lLL~GPpGvGKTT~a~~lAk~~g~~viElNASD~R~~~~I 82 (403)
T PRK04195 3 PWVEKYRPKSLSDVVGNEKAKKQLREWIESWLKGKPPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRTKDVI 82 (403)
T ss_pred CCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCHHHH
T ss_conf 86402189989998588999999999999987399657469988939987999999999984998599771011478999
Q ss_pred HHHHHHH--------HCCCHHHHHHHHHCCHHH----HHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCCC
Q ss_conf 6666641--------016378887576169899----9999998634751002567876520004667400552045543
Q gi|254780552|r 97 AALLTNL--------EDRDVLFIDEIHRLSIIV----EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVG 164 (334)
Q Consensus 97 ~~~~~~~--------~~~~vlfiDEihrl~~~~----q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~~ 164 (334)
..+...+ ..+.++++||+|.++... +.+|+..++.-+ .| +|+.+|+++
T Consensus 83 ~~~i~~~~~~~sl~~~~~KlIIlDEvD~l~~~~d~gg~~al~~~ik~s~------------------~P--iIli~Nd~~ 142 (403)
T PRK04195 83 ERVAGEASTSGSLFGAKRKLILLDEVDGIHGNADRGGVRAILEIIKKAK------------------NP--IILTANDPY 142 (403)
T ss_pred HHHHHHHHHCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCC------------------CE--EEEEECCCC
T ss_conf 9999987606887788734999634344572444799999999985488------------------70--899826845
Q ss_pred C-CCHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCH
Q ss_conf 3-554544201206732645479999987776541210111111123320221015678877754333455415886427
Q gi|254780552|r 165 L-LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITR 243 (334)
Q Consensus 165 ~-l~~~l~sR~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~Gd~R~AlnlLe~v~d~a~~~~~~~i~~ 243 (334)
. ...+|+|||. .++|++++.+++...++++|++++++++++++..||+.|+||+|.|+|.||.+ +.|.+.++.
T Consensus 143 ~~~~~~lrs~c~-~i~F~~~~~~~I~~~L~~I~~~Egi~i~~~aL~~Ia~~s~GDlR~aIN~LQ~~-----~~~~~~~~~ 216 (403)
T PRK04195 143 DPSLRPLRNACL-MIEFKRLSKRSIVPVLKRICRKEGIECEEEALREIAERSGGDLRSAINDLQAI-----AEGGGRITL 216 (403)
T ss_pred CCCHHHHHHHHH-HCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHH-----HCCCCCCCH
T ss_conf 567177997661-22179949999999999999976999999999999998797399999999999-----748997756
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCC-CCHHHHHHHHH
Q ss_conf 78787654210000004677688999999751866206999999828745674678999999834305-87189999998
Q gi|254780552|r 244 EIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ-RTPRGRLLMPI 322 (334)
Q Consensus 244 ~~~~~~l~~~~id~~Gl~~~d~~~L~~l~~~~~~g~~~~~~isA~~ks~RgS~~daa~~yL~r~g~~~-~~prgRrL~~~ 322 (334)
+.+...- -|. ...+.+++..-|++. .......++..+. -|+|....|+....-.. .++ .-+..
T Consensus 217 ~~~~~~~----rd~------~~~if~~~~~if~~~-~~~~a~~~~~~~d--~dpd~~~~wi~eNip~~y~~~---~~~~~ 280 (403)
T PRK04195 217 DDVKTGE----RDR------EESIFEALDAVFKSR-NYDQALEASYDVD--EDPDDLIQWIDENIPKEYKDP---EDLAR 280 (403)
T ss_pred HHHHHHC----CCC------CCCHHHHHHHHHCCC-CHHHHHHHHHCCC--CCHHHHHHHHHHCCCCCCCCH---HHHHH
T ss_conf 6666413----523------143899999997569-8999999885247--998999999996286447999---99999
Q ss_pred HHHHCCCCC
Q ss_conf 886648888
Q gi|254780552|r 323 AWQHLGIDI 331 (334)
Q Consensus 323 a~EdiGla~ 331 (334)
|+|.+..||
T Consensus 281 a~~~ls~AD 289 (403)
T PRK04195 281 AYEALSRAD 289 (403)
T ss_pred HHHHHHHHH
T ss_conf 999998879
No 35
>KOG0989 consensus
Probab=100.00 E-value=5.2e-39 Score=258.06 Aligned_cols=201 Identities=27% Similarity=0.340 Sum_probs=158.6
Q ss_pred HHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCC----CC--CCCCCCC
Q ss_conf 57875078987782397999999999999866146776707997378855778999999861898----53--1257644
Q gi|254780552|r 17 ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN----FR--STSGPVI 90 (334)
Q Consensus 17 ~~~~~lRP~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~----~~--~~s~~~~ 90 (334)
.+.+..||++|+|++||++++..|+.++.. ..+||+||||||||||||.|+++|.+++++ +. +.+++..
T Consensus 25 swteKYrPkt~de~~gQe~vV~~L~~a~~~-----~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSde 99 (346)
T KOG0989 25 SWTEKYRPKTFDELAGQEHVVQVLKNALLR-----RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDE 99 (346)
T ss_pred CHHHHHCCCCHHHHCCHHHHHHHHHHHHHH-----CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHCCCCC
T ss_conf 537874787377650159999999999860-----688607866899986768999999985574235554243136600
Q ss_pred CCH-------HHHHHHHHHH--------HCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCE
Q ss_conf 334-------6766666641--------0163788875761698999999998634751002567876520004667400
Q gi|254780552|r 91 AKA-------GDLAALLTNL--------EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFT 155 (334)
Q Consensus 91 ~~~-------~dl~~~~~~~--------~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~ 155 (334)
.+. ++........ ..-.|+++||+|.++..+|.+|+..||++-- +. .
T Consensus 100 rGisvvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~-----------~t-------r 161 (346)
T KOG0989 100 RGISVVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSR-----------TT-------R 161 (346)
T ss_pred CCCCCHHHHHCCHHHHHHCCCCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHCCCC-----------CE-------E
T ss_conf 14310066523799875025565678898632899741645309999999999862546-----------65-------9
Q ss_pred EEECCCCCCCCCHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 55204554335545442012067326454799999877765412101111111233202210156788777543334554
Q gi|254780552|r 156 LIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235 (334)
Q Consensus 156 lI~ATt~~~~l~~~l~sR~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~Gd~R~AlnlLe~v~d~a~~ 235 (334)
||+-||...+|+.|+.|||. .|+|.++..+++...++.+|.++|+.++++|++.|+..|+||+|+|+..||.+.-
T Consensus 162 FiLIcnylsrii~pi~SRC~-KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~GdLR~Ait~Lqsls~---- 236 (346)
T KOG0989 162 FILICNYLSRIIRPLVSRCQ-KFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDGDLRRAITTLQSLSL---- 236 (346)
T ss_pred EEEECCCHHHCCHHHHHHHH-HHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHC----
T ss_conf 99973885647728774677-7128876447899999999888589978789999999738728999999998610----
Q ss_pred HCCCCCCHHHH
Q ss_conf 15886427787
Q gi|254780552|r 236 AHAKTITREIA 246 (334)
Q Consensus 236 ~~~~~i~~~~~ 246 (334)
..+.|+...+
T Consensus 237 -~gk~It~~~~ 246 (346)
T KOG0989 237 -LGKRITTSLV 246 (346)
T ss_pred -CCCCCCHHHH
T ss_conf -4763645889
No 36
>KOG0991 consensus
Probab=100.00 E-value=1.2e-32 Score=219.14 Aligned_cols=262 Identities=20% Similarity=0.252 Sum_probs=181.0
Q ss_pred CCCCCCCCHHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHC-CCC----CC
Q ss_conf 8444412057875078987782397999999999999866146776707997378855778999999861-898----53
Q gi|254780552|r 9 SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-GVN----FR 83 (334)
Q Consensus 9 ~~~~~~~~~~~~~lRP~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l-~~~----~~ 83 (334)
+.......++++..||..++|+||+++.+.+++..... + .+||++|+|||||||||.+.++|+++ |.. ..
T Consensus 8 ~~~~~~~l~wVeKYrP~~l~dIVGNe~tv~rl~via~~---g--nmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vL 82 (333)
T KOG0991 8 SKSDKYQLPWVEKYRPSVLQDIVGNEDTVERLSVIAKE---G--NMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVL 82 (333)
T ss_pred CCCCCCCCHHHHHHCCHHHHHHHCCHHHHHHHHHHHHC---C--CCCCEEEECCCCCCHHHHHHHHHHHHHCHHHHHHHH
T ss_conf 75311113578860852998821779899999999972---8--998667527999861648999999983806665763
Q ss_pred CCCCCCCCCHHHHH-H---HHHHH------HCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 12576443346766-6---66641------01637888757616989999999986347510025678765200046674
Q gi|254780552|r 84 STSGPVIAKAGDLA-A---LLTNL------EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSR 153 (334)
Q Consensus 84 ~~s~~~~~~~~dl~-~---~~~~~------~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~ 153 (334)
++||+.-.+. |++ . .|..- +++.|+++||++.++..+|.+|...||=|.- + .+
T Consensus 83 ELNASdeRGI-DvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~gAQQAlRRtMEiyS~-----------t-----tR 145 (333)
T KOG0991 83 ELNASDERGI-DVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAGAQQALRRTMEIYSN-----------T-----TR 145 (333)
T ss_pred HCCCCCCCCC-HHHHHHHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCC-----------C-----CH
T ss_conf 2057655460-89999999998720348998524899615220206899999999999706-----------3-----20
Q ss_pred CEEEECCCCCCCCCHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 00552045543355454420120673264547999998777654121011111112332022101567887775433345
Q gi|254780552|r 154 FTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233 (334)
Q Consensus 154 f~lI~ATt~~~~l~~~l~sR~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~Gd~R~AlnlLe~v~d~a 233 (334)
|.+|+|...||..|++|||.+ +||..++...+..-+..+++.+++++++++|+.|...++||||.|+|.|+..
T Consensus 146 --FalaCN~s~KIiEPIQSRCAi-LRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~GDMRQalNnLQst---- 218 (333)
T KOG0991 146 --FALACNQSEKIIEPIQSRCAI-LRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQGDMRQALNNLQST---- 218 (333)
T ss_pred --HHHHHCCHHHHHHHHHHHHHH-HHHCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHH----
T ss_conf --000015421322267734576-5322267899999999999870788771147785544166199999999987----
Q ss_pred HHHCCCCCCHHHHHHHHHHHHC---CCC---HH-HHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCHHHHHHH
Q ss_conf 5415886427787876542100---000---04-6776889999997518662069999998287456746789999
Q gi|254780552|r 234 EVAHAKTITREIADAALLRLAI---DKM---GF-DQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPY 303 (334)
Q Consensus 234 ~~~~~~~i~~~~~~~~l~~~~i---d~~---Gl-~~~d~~~L~~l~~~~~~g~~~~~~isA~~ks~RgS~~daa~~y 303 (334)
..|-+.++.+.+-+++..-.- -+. -+ ...|. -++.+++-.+-|=.-.|.+..+....+.-+ .+|++
T Consensus 219 -~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~~~~~~~-A~~il~~lw~lgysp~Dii~~~FRv~K~~~--~~E~~ 291 (333)
T KOG0991 219 -VNGFGLVNQENVFKVCDEPHPLLVKKMLQACLKRNIDE-ALKILAELWKLGYSPEDIITTLFRVVKNMD--VAESL 291 (333)
T ss_pred -HCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHCCHHH-HHHHHHHHHHCCCCHHHHHHHHHHHHHHCC--HHHHH
T ss_conf -40545246323100069998599999999998612999-999999999748988999999999998425--78899
No 37
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=100.00 E-value=2.1e-31 Score=211.59 Aligned_cols=185 Identities=24% Similarity=0.358 Sum_probs=144.0
Q ss_pred HHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCC-EEEECCCCCCHHHHHHHHHHHCCCCC--------------
Q ss_conf 787507898778239799999999999986614677670-79973788557789999998618985--------------
Q gi|254780552|r 18 DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH-VLFVGPPGLGKTTLAQVVARELGVNF-------------- 82 (334)
Q Consensus 18 ~~~~lRP~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h-~Lf~GPpG~GKTtlA~iiA~~l~~~~-------------- 82 (334)
..-...|++|+++|||++++..+..++++++ ++| .||+||+|+||||+|+.+|+.+-+.-
T Consensus 13 ~~g~p~Pr~~~~liGq~~~~~~L~~a~~~gR-----l~HA~Lf~GP~GiGKaTlA~~~A~~Ll~~~~~~~~~~~~~~pd~ 87 (352)
T PRK09112 13 IDGVPSPSENNRLFGHEEARAFLAQAYREGR-----LHHALLFEGPEGIGKATLAFHLANHILSHPDPNEAPETLADPDP 87 (352)
T ss_pred CCCCCCCCCHHHHCCHHHHHHHHHHHHHCCC-----CCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 8999896446462786999999999998499-----65246535899808999999999998669986668655678887
Q ss_pred -----CCCC-C--CC---CC--------------CHHHHHHHHHHH------HCCCHHHHHHHHHCCHHHHHHHHHHHHC
Q ss_conf -----3125-7--64---43--------------346766666641------0163788875761698999999998634
Q gi|254780552|r 83 -----RSTS-G--PV---IA--------------KAGDLAALLTNL------EDRDVLFIDEIHRLSIIVEEILYPAMED 131 (334)
Q Consensus 83 -----~~~s-~--~~---~~--------------~~~dl~~~~~~~------~~~~vlfiDEihrl~~~~q~~Ll~~mE~ 131 (334)
..+. + |. +. ++.+++.+...+ +...|++|||+|.||...+++||..+|+
T Consensus 88 ~~~~~r~i~~g~hpdl~~i~r~~d~k~~~~~~~I~vd~iR~l~~~~~~~~~~~~~kv~Iid~ad~m~~~aaNALLK~LEE 167 (352)
T PRK09112 88 ASPLWRQIAQGAHPNLLHLTRPFDEKTGKFKTAITVDEIRRVTHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEE 167 (352)
T ss_pred CCHHHHHHHCCCCCCEEEEECCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHC
T ss_conf 87789999748999956553432202145433577799999999845488668806999818787469999999998534
Q ss_pred CCCCCCCCCCCCCCEEECCCCCCEEEECCCCCCCCCHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 75100256787652000466740055204554335545442012067326454799999877765412101111111233
Q gi|254780552|r 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEI 211 (334)
Q Consensus 132 ~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~~~l~~~l~sR~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~i 211 (334)
|. ++..||..||++++|+++++|||. .++|.+++.+++.+.++.++..+++. +++++..|
T Consensus 168 ----------Pp--------~~~~fiLit~~~~~ll~TI~SRCq-~~~f~pL~~~di~~~L~~i~~~~~~~-~~~~~~~l 227 (352)
T PRK09112 168 ----------PP--------ARALFILISHSSGRLLPTIRSRCQ-PISLKPLDDDELKKALSHLGSKQGIS-AGEETEAL 227 (352)
T ss_pred ----------CC--------CCEEEEEEECCHHHCHHHHHHHCC-CCCCCCCCHHHHHHHHHHHHHCCCCC-CHHHHHHH
T ss_conf ----------89--------874899886997777689997433-21488939899999999875126899-87999999
Q ss_pred HCCCCCCHHHHHHHHH
Q ss_conf 2022101567887775
Q gi|254780552|r 212 AMRSRGTPRIAGRLLR 227 (334)
Q Consensus 212 a~~s~Gd~R~AlnlLe 227 (334)
+..|+|++|.|++++.
T Consensus 228 ~~~a~GS~~~Al~L~~ 243 (352)
T PRK09112 228 LQRSEGSVRKALLLLN 243 (352)
T ss_pred HHHHCCCHHHHHHHHC
T ss_conf 9870899889998744
No 38
>PRK04132 replication factor C small subunit; Provisional
Probab=99.97 E-value=4.1e-29 Score=197.55 Aligned_cols=148 Identities=20% Similarity=0.113 Sum_probs=104.8
Q ss_pred EEEECCCCCCCCCHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 05520455433554544201206732645479999987776541210111111123320221015678877754333455
Q gi|254780552|r 155 TLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234 (334)
Q Consensus 155 ~lI~ATt~~~~l~~~l~sR~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~Gd~R~AlnlLe~v~d~a~ 234 (334)
.||..+|...||.+|++|||. ++||.|++.+++..-++.+|+.+++++++++++.|...|+||||.|+|.||.+
T Consensus 677 ~~~~SCNYsSKIIePIQSRCa-vFRF~PL~~e~v~~RL~~Ia~~Egv~itedGleAI~~~aeGDMRkAIN~LQsa----- 750 (863)
T PRK04132 677 FVSHNCNYSSKIIEPIQSRCA-IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYVAEGDMRRAINVLQAA----- 750 (863)
T ss_pred EEEEECCCCCCCCCHHHCCEE-EEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHH-----
T ss_conf 179866760407416655624-78836899999999999999974997677899999997567489999999999-----
Q ss_pred HHCCCCCCHHHHHHHHHHHH---CC------CCH-HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCH--HHHHH
Q ss_conf 41588642778787654210---00------000-46776889999997518662069999998287456746--78999
Q gi|254780552|r 235 VAHAKTITREIADAALLRLA---ID------KMG-FDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE--DLIEP 302 (334)
Q Consensus 235 ~~~~~~i~~~~~~~~l~~~~---id------~~G-l~~~d~~~L~~l~~~~~~g~~~~~~isA~~ks~RgS~~--daa~~ 302 (334)
+.+.+.||.+.|-+++.+-. |. -.| +.. .+..|..+ ....|-.+.|.|..+|+.+..-+- .+-..
T Consensus 751 a~~~~~Vt~d~Vy~v~~~p~P~~I~~~l~~al~g~f~~-A~~~L~~l--l~~~GlS~~DII~~i~r~v~~l~ipe~~kv~ 827 (863)
T PRK04132 751 AALDTKITDENVFKVASRARPEDIREMMLLALKGNFLK-AREKLREI--LLKQGLSGEDVLVQMHREVFNLPIDEPKKVY 827 (863)
T ss_pred HHCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHCCCHHH-HHHHHHHH--HHHCCCCHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 86169878889999708999899999999997299899-99999999--9966969899999999999617998789999
Q ss_pred HHHHHHHCC
Q ss_conf 999834305
Q gi|254780552|r 303 YMIQQGFIQ 311 (334)
Q Consensus 303 yL~r~g~~~ 311 (334)
.+-++|++.
T Consensus 828 li~~ige~e 836 (863)
T PRK04132 828 LADKIGEYN 836 (863)
T ss_pred HHHHHHHHH
T ss_conf 999997667
No 39
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.96 E-value=2.7e-29 Score=198.70 Aligned_cols=174 Identities=17% Similarity=0.293 Sum_probs=135.9
Q ss_pred CHHHHCCHHHHHHHHHHHHHHHHHCCCCCCC-EEEECCCCCCHHHHHHHHHHHCCCCCC--------CC---CCCCCCCH
Q ss_conf 8778239799999999999986614677670-799737885577899999986189853--------12---57644334
Q gi|254780552|r 26 TLEEFTGQVEACSNLKVFIEAAKARAEALDH-VLFVGPPGLGKTTLAQVVARELGVNFR--------ST---SGPVIAKA 93 (334)
Q Consensus 26 ~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h-~Lf~GPpG~GKTtlA~iiA~~l~~~~~--------~~---s~~~~~~~ 93 (334)
+|+|||||+++++.|+.++... .++| .||+||+|+|||++|+.+|+.+-|... .+ ++..+ ++
T Consensus 2 ~f~~iiGq~~i~~~L~~~i~~~-----rl~HAyLF~Gp~G~GK~~~A~~~A~~ll~~~~~~~~~D~~~~~~~~~~~I-~v 75 (313)
T PRK05564 2 SFRTIIGHENIKNRIDNSIIKG-----KFSHASLIVGEDGIGKSILAKEIANKILGKSEQREYVDIIEYKPINKKSI-GV 75 (313)
T ss_pred CHHHCCCHHHHHHHHHHHHHCC-----CCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCC-CH
T ss_conf 8323268299999999999879-----98750432799985099999999999828997788986588633225699-98
Q ss_pred HHHHHHHHHH------HCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCCCCCC
Q ss_conf 6766666641------0163788875761698999999998634751002567876520004667400552045543355
Q gi|254780552|r 94 GDLAALLTNL------EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167 (334)
Q Consensus 94 ~dl~~~~~~~------~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~~~l~ 167 (334)
.+++.+...+ +...|++|||+|+++..++++||..+|+ |. ++.+||.+||++++|.
T Consensus 76 d~IR~l~~~~~~~p~~g~~KV~II~~ae~m~~~AaNALLKtLEE----------PP--------~~t~fIL~t~~~~~lL 137 (313)
T PRK05564 76 DDIRNIIEEVNKKPYEGDKKVIIIYKSEKMTEQAQNAFLKTIEE----------PP--------KGVFIILLCENLEQIL 137 (313)
T ss_pred HHHHHHHHHHHHCCCCCCCEEEEECCHHHHCHHHHHHHHHCCCC----------CC--------CCEEEEEEECCHHHCC
T ss_conf 99999999984086258956999807777589999998455036----------89--------9858998649835475
Q ss_pred HHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 4544201206732645479999987776541210111111123320221015678877754
Q gi|254780552|r 168 NPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228 (334)
Q Consensus 168 ~~l~sR~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~Gd~R~AlnlLe~ 228 (334)
++++|||. +++|.+++.+++...+.... -.++++....+++.|+|.+..|..+++.
T Consensus 138 pTI~SRCQ-~~~f~~l~~~~i~~~L~~~~----~~~~~~~~~~~~~~s~G~~~~a~~~~~~ 193 (313)
T PRK05564 138 DTIKSRCQ-IYKLNRLSKEDIEKFISYKY----NDIDEENKNSAIAFSDGIPGKVEKFIED 193 (313)
T ss_pred CHHHCCCE-EEECCCCCHHHHHHHHHHHC----CCCCHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 77870653-56689989999999999862----5899999999999829987999998405
No 40
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.96 E-value=8.7e-29 Score=195.57 Aligned_cols=216 Identities=26% Similarity=0.358 Sum_probs=165.1
Q ss_pred HHCCCCCHHHHCCHHHHHHHHHHHHHHH----HHCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC--CH
Q ss_conf 7507898778239799999999999986----61467767079973788557789999998618985312576443--34
Q gi|254780552|r 20 SLLRPRTLEEFTGQVEACSNLKVFIEAA----KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA--KA 93 (334)
Q Consensus 20 ~~lRP~~l~dviGQ~~~~~~l~~~i~a~----~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~~~~~--~~ 93 (334)
+..+--+|+|||||+.+|...++..+.- +-+.+.+.++|||||||||||.+|+.+|++.+++|..+.++.+- -+
T Consensus 113 e~~~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehV 192 (368)
T COG1223 113 EIISDITLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHV 192 (368)
T ss_pred HHHCCCCHHHHHCHHHHHHHHHHHHHHHHCHHHHCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEECHHHHHHHHH
T ss_conf 66136617664163988888799999964968763457541687789996487999987254578548711688888774
Q ss_pred HH----HHHHHHHHH--CCCHHHHHHHHHC--CHHHH----------HHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCE
Q ss_conf 67----666666410--1637888757616--98999----------999998634751002567876520004667400
Q gi|254780552|r 94 GD----LAALLTNLE--DRDVLFIDEIHRL--SIIVE----------EILYPAMEDFQLDLMVGEGPSARSVKINLSRFT 155 (334)
Q Consensus 94 ~d----l~~~~~~~~--~~~vlfiDEihrl--~~~~q----------~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~ 155 (334)
+| +..++..+. ..||+||||++.+ .+.-| ++||.-|+. | .++ .-++
T Consensus 193 Gdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDg----i--~en----------eGVv 256 (368)
T COG1223 193 GDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDG----I--KEN----------EGVV 256 (368)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC----C--CCC----------CCEE
T ss_conf 35989999999988751984998400245553045788645499999999985017----4--457----------7569
Q ss_pred EEECCCCCCCCCHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCC-CHHHH-HHHHHHHHHHH
Q ss_conf 55204554335545442012067326454799999877765412101111111233202210-15678-87775433345
Q gi|254780552|r 156 LIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRG-TPRIA-GRLLRRVRDFA 233 (334)
Q Consensus 156 lI~ATt~~~~l~~~l~sR~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~G-d~R~A-lnlLe~v~d~a 233 (334)
.|+|||++..|.+++||||.--+.|...+.+|..+|++..++..-++++.+ +.+++..++| +.|+- -..|+.+.-.|
T Consensus 257 tIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~-~~~~~~~t~g~SgRdikekvlK~aLh~A 335 (368)
T COG1223 257 TIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDAD-LRYLAAKTKGMSGRDIKEKVLKTALHRA 335 (368)
T ss_pred EEEECCCHHHCCHHHHHHHHHEEEEECCCHHHHHHHHHHHHHHCCCCCCCC-HHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 995059846507888865565065648885899999999898589765568-9999998478772068999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHH
Q ss_conf 5415886427787876542
Q gi|254780552|r 234 EVAHAKTITREIADAALLR 252 (334)
Q Consensus 234 ~~~~~~~i~~~~~~~~l~~ 252 (334)
.+++...|+.+++++++++
T Consensus 336 i~ed~e~v~~edie~al~k 354 (368)
T COG1223 336 IAEDREKVEREDIEKALKK 354 (368)
T ss_pred HHHCHHHHHHHHHHHHHHH
T ss_conf 8713444338899999986
No 41
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.96 E-value=1.1e-28 Score=194.92 Aligned_cols=179 Identities=23% Similarity=0.302 Sum_probs=137.2
Q ss_pred CCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCE-EEECCCCCCHHHHHHHHHHHCCCCCC-----------------
Q ss_conf 078987782397999999999999866146776707-99737885577899999986189853-----------------
Q gi|254780552|r 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVNFR----------------- 83 (334)
Q Consensus 22 lRP~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~-Lf~GPpG~GKTtlA~iiA~~l~~~~~----------------- 83 (334)
--|+.+.|+|||++++..|..++.+++ ++|. ||+||+|+||||+|+.+|+.+.|.-.
T Consensus 11 p~P~~~~~liGqe~~~~~L~~a~~~gr-----l~HA~Lf~Gp~GiGK~tlA~~~A~~ll~~~~~~~~~~~~~~~~l~~~~ 85 (363)
T PRK07471 11 PHPRETTALFGHAAAEAALLDAYRSGR-----LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDAVFPPPASLAVDP 85 (363)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCC-----CCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCC
T ss_conf 599982731681999999999998599-----764587679998188999999999985799977777678705312587
Q ss_pred ------CCC-C--CC---CC--------------CHHHHHHHHHHH------HCCCHHHHHHHHHCCHHHHHHHHHHHHC
Q ss_conf ------125-7--64---43--------------346766666641------0163788875761698999999998634
Q gi|254780552|r 84 ------STS-G--PV---IA--------------KAGDLAALLTNL------EDRDVLFIDEIHRLSIIVEEILYPAMED 131 (334)
Q Consensus 84 ------~~s-~--~~---~~--------------~~~dl~~~~~~~------~~~~vlfiDEihrl~~~~q~~Ll~~mE~ 131 (334)
.+. + +. ++ .+.+++.+...+ +...|++|||+|+||...+++||+.+|+
T Consensus 86 ~~p~~r~i~~~~hpdl~~i~r~~d~k~~~~~~~I~Vd~iR~l~~~~~~~p~~g~~kV~IId~ad~mn~~aaNALLK~LEE 165 (363)
T PRK07471 86 DHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRETIGFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEE 165 (363)
T ss_pred CCCHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECHHHHCHHHHHHHHHHHCC
T ss_conf 77289999526999846676200113332124453999999999972485248966999868787388999999997215
Q ss_pred CCCCCCCCCCCCCCEEECCCCCCEEEECCCCCCCCCHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 75100256787652000466740055204554335545442012067326454799999877765412101111111233
Q gi|254780552|r 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEI 211 (334)
Q Consensus 132 ~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~~~l~~~l~sR~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~i 211 (334)
|.. ..+||..|+++++|.++++|||. .++|.+++.+++...+.. ......+++.+..+
T Consensus 166 ----------PP~--------~t~fiLit~~~~~llpTI~SRCq-~~~~~~l~~~~~~~~L~~---~~~~~~~~~~~~~l 223 (363)
T PRK07471 166 ----------PPA--------RSLLLLVSHAPARLLPTIRSRCR-KLRLRPLAPEDVIAALAE---AGGPALDDAELAAL 223 (363)
T ss_pred ----------CCC--------CEEEEEEECCHHHCHHHHHHHCC-CCCCCCCCHHHHHHHHHH---HCCCCCCHHHHHHH
T ss_conf ----------898--------83899863997777799997352-425899599999999998---43899998999999
Q ss_pred HCCCCCCHHHHHHHHH
Q ss_conf 2022101567887775
Q gi|254780552|r 212 AMRSRGTPRIAGRLLR 227 (334)
Q Consensus 212 a~~s~Gd~R~AlnlLe 227 (334)
+..|+|+++.|+.+++
T Consensus 224 a~~a~Gs~~~Al~l~~ 239 (363)
T PRK07471 224 AALAEGSVGRALRLAG 239 (363)
T ss_pred HHHCCCCHHHHHHHHC
T ss_conf 9975899999998747
No 42
>CHL00176 ftsH cell division protein; Validated
Probab=99.96 E-value=9.9e-28 Score=189.09 Aligned_cols=211 Identities=28% Similarity=0.358 Sum_probs=157.9
Q ss_pred CCHHHHCCHHHHHHHHHHHHHHHH-------HCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC------
Q ss_conf 987782397999999999999866-------1467767079973788557789999998618985312576443------
Q gi|254780552|r 25 RTLEEFTGQVEACSNLKVFIEAAK-------ARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA------ 91 (334)
Q Consensus 25 ~~l~dviGQ~~~~~~l~~~i~a~~-------~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~~~~~------ 91 (334)
-+|+||.|++++|..|.-.+.--+ ...+.+.-+||+||||||||.||+++|.|.+++|..+||+.+.
T Consensus 174 vtF~DVaG~~eaK~el~EivdfLk~P~k~~~~Gak~PkGvLL~GpPGTGKTlLAkAvAgEa~vpF~~~sgs~F~e~~vGv 253 (631)
T CHL00176 174 ITFNDVAGVEEAKEELEEVVTFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFVGV 253 (631)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEHHHHHHHHCCH
T ss_conf 77532288589999999999983595887644996896589889899878899999856558846998837855642155
Q ss_pred CHHHHHHHHHHHHC--CCHHHHHHHHHCCHH--------------HHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCE
Q ss_conf 34676666664101--637888757616989--------------99999998634751002567876520004667400
Q gi|254780552|r 92 KAGDLAALLTNLED--RDVLFIDEIHRLSII--------------VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFT 155 (334)
Q Consensus 92 ~~~dl~~~~~~~~~--~~vlfiDEihrl~~~--------------~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~ 155 (334)
+++-++.++..++. .+|+|||||+.+.+. ..+.||.-|+-|.- -..+.
T Consensus 254 ga~rVR~LF~~Ar~~aP~IiFIDEiDaig~~Rg~~~~gg~~e~e~tlnqLL~emDGf~~----------------~~gVi 317 (631)
T CHL00176 254 GAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGVGGGNDEREQTLNQLLTEMDGFEG----------------NKGVI 317 (631)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCC----------------CCCEE
T ss_conf 58999999999986399699987101201147898889850899999999998428887----------------88869
Q ss_pred EEECCCCCCCCCHHHHH--CCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHH-HHHHHCCCCC-CHHHHHHHHHHHHH
Q ss_conf 55204554335545442--01206732645479999987776541210111111-1233202210-15678877754333
Q gi|254780552|r 156 LIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEA-ACEIAMRSRG-TPRIAGRLLRRVRD 231 (334)
Q Consensus 156 lI~ATt~~~~l~~~l~s--R~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~a-l~~ia~~s~G-d~R~AlnlLe~v~d 231 (334)
+|+|||+|..|.+||+- ||..++.+..++.+...+|++..++. ..+++++ +..||+..-| +.=..-|++.-+.-
T Consensus 318 ViaATNrpd~LDpALlRPGRFDR~I~V~lPD~~gR~~IL~vh~k~--~~l~~dvdl~~iA~~T~GfSGAdLanlvNEAal 395 (631)
T CHL00176 318 VIAATNRIDILDAALLRPGRFDRQVTVSLPDFEGRLDILKVHARN--KKLAEDVSLELIARRTPGFSGADLANLLNEAAI 395 (631)
T ss_pred EEEECCCCCCCCHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHC--CCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 998258855456866268877549982698989999999999707--866653009999862699867888769999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 4554158864277878765421
Q gi|254780552|r 232 FAEVAHAKTITREIADAALLRL 253 (334)
Q Consensus 232 ~a~~~~~~~i~~~~~~~~l~~~ 253 (334)
.|.-.+...|+.++.++++...
T Consensus 396 ~AaR~~~~~it~~d~~~AidrV 417 (631)
T CHL00176 396 LAARRRKNQITMSEIDEAIDRV 417 (631)
T ss_pred HHHHHCCCCCCHHHHHHHHHHH
T ss_conf 9998477764788999999999
No 43
>TIGR01241 FtsH_fam ATP-dependent metallopeptidase HflB; InterPro: IPR005936 Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site . The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This group of metallopeptidases belong to MEROPS peptidase family M41 (FtsH endopeptidase family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. FtsH is a membrane-anchored ATP-dependent protease that degrades misfolded or misassembled membrane proteins as well as a subset of cytoplasmic regulatory proteins. FtsH is a 647-residue protein of 70 kDa, with two putative transmembrane segments towards its N terminus which anchor the protein to the membrane, giving rise to a periplasmic domain of 70 residues and a cytoplasmic segment of 520 residues containing the ATPase and protease domains . ; GO: 0004222 metalloendopeptidase activity, 0030163 protein catabolic process, 0016020 membrane.
Probab=99.96 E-value=1.3e-28 Score=194.44 Aligned_cols=209 Identities=29% Similarity=0.372 Sum_probs=157.4
Q ss_pred CHHHHCCHHHHHHHHHHHHHH-------HHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC------C
Q ss_conf 877823979999999999998-------661467767079973788557789999998618985312576443------3
Q gi|254780552|r 26 TLEEFTGQVEACSNLKVFIEA-------AKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA------K 92 (334)
Q Consensus 26 ~l~dviGQ~~~~~~l~~~i~a-------~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~~~~~------~ 92 (334)
+|+||-|.|++|+.|.-.++- .+.-++.+.-+||+||||||||.||+++|.|-++||.++||+.+- +
T Consensus 57 ~F~DVAG~dEAKeEl~EiVdFLK~P~kf~~LGaKIPKGVLLvGPPGTGKTLLAKAvAGEA~VPFF~iSGSdFVEMFVGVG 136 (505)
T TIGR01241 57 TFKDVAGIDEAKEELVEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVG 136 (505)
T ss_pred EECCCCCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCCCEEECCCCEEECCCCCC
T ss_conf 22344453233343331342226963798727889871473178784246788752025889624740761011120564
Q ss_pred HHHHHHHHHHHHC--CCHHHHHHHHHCCHHHH---------------HHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCE
Q ss_conf 4676666664101--63788875761698999---------------999998634751002567876520004667400
Q gi|254780552|r 93 AGDLAALLTNLED--RDVLFIDEIHRLSIIVE---------------EILYPAMEDFQLDLMVGEGPSARSVKINLSRFT 155 (334)
Q Consensus 93 ~~dl~~~~~~~~~--~~vlfiDEihrl~~~~q---------------~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~ 155 (334)
++-++-+|.++++ +||+|||||+..-|... +-||-=|+-|. .. .-+.
T Consensus 137 ASRVRDLFeqAK~nAPCIIFIDEIDAVGr~RGaG~lGGGnDEREQTLNQLLVEMDGF~----------~~------~gvI 200 (505)
T TIGR01241 137 ASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGELGGGNDEREQTLNQLLVEMDGFG----------TN------TGVI 200 (505)
T ss_pred CEEHHHHHHHHHHHCCCEEEEECHHHCCCCCCCCCCCCCCCHHHHHHHHHHEECCCCC----------CC------CCEE
T ss_conf 0001445799997189705640100003335643667654135543323313317858----------98------8579
Q ss_pred EEECCCCCCCCCHHHHH--CCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHH-HHHHHCCCCC-CHHHHHHHHHHHHH
Q ss_conf 55204554335545442--01206732645479999987776541210111111-1233202210-15678877754333
Q gi|254780552|r 156 LIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEA-ACEIAMRSRG-TPRIAGRLLRRVRD 231 (334)
Q Consensus 156 lI~ATt~~~~l~~~l~s--R~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~a-l~~ia~~s~G-d~R~AlnlLe~v~d 231 (334)
+|+|||||.-|.+||+- ||..+...+.++...-.+||+-.++ ++++++++ |..||++--| +-=+.=|++.=+--
T Consensus 201 v~AATNRPDvLD~ALLRPGRFDRQv~V~~PD~~GR~~IL~VH~~--~~kLa~~vdL~~~Ar~TPGfSGADLaNl~NEAAL 278 (505)
T TIGR01241 201 VIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAK--NKKLAPDVDLKAVARRTPGFSGADLANLLNEAAL 278 (505)
T ss_pred EEEECCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHC--CCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 98504884116510068787445134588874678999999854--8899702477999701568767889999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHH
Q ss_conf 455415886427787876542
Q gi|254780552|r 232 FAEVAHAKTITREIADAALLR 252 (334)
Q Consensus 232 ~a~~~~~~~i~~~~~~~~l~~ 252 (334)
+|.=.+...|+..++++|...
T Consensus 279 lAAR~n~~~i~~~~~eeA~Dr 299 (505)
T TIGR01241 279 LAARKNKTEITMNDIEEAVDR 299 (505)
T ss_pred HHHHCCCCEECHHHHHHHHHH
T ss_conf 986179865628889878776
No 44
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.95 E-value=1.7e-27 Score=187.66 Aligned_cols=178 Identities=23% Similarity=0.331 Sum_probs=131.9
Q ss_pred CCHHHHCCHHHHHHHHHHHHHHHHHC-------CCCCCCE-EEECCCCCCHHHHHHHHHHHCCCCC------CC------
Q ss_conf 98778239799999999999986614-------6776707-9973788557789999998618985------31------
Q gi|254780552|r 25 RTLEEFTGQVEACSNLKVFIEAAKAR-------AEALDHV-LFVGPPGLGKTTLAQVVARELGVNF------RS------ 84 (334)
Q Consensus 25 ~~l~dviGQ~~~~~~l~~~i~a~~~~-------~~~~~h~-Lf~GPpG~GKTtlA~iiA~~l~~~~------~~------ 84 (334)
..|+|+|||+|++..|+.++.+.+.. ...+.|. ||+||+|+|||++|+++|+.++|+- ..
T Consensus 2 ~~f~~ivGQe~v~~~L~~A~~~~R~~~~~~~~~~~~~~HAyLF~Gp~G~Gk~~~A~~~A~~l~C~~~~~~~cg~C~~C~~ 81 (395)
T PRK07940 2 GVWDRLVGQDAVVAELRAAARAARADSAHSAAAGSGMTHAWLFTGPPGSGRSNAARAFAAALQCTDPGVPGCGECRACRT 81 (395)
T ss_pred CCCHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHH
T ss_conf 97013159299999999999836343443333468766037636899878899999999996699999999987878999
Q ss_pred C-CC--CCC---------CCHHHHHHHHHHH------HCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCE
Q ss_conf 2-57--644---------3346766666641------0163788875761698999999998634751002567876520
Q gi|254780552|r 85 T-SG--PVI---------AKAGDLAALLTNL------EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARS 146 (334)
Q Consensus 85 ~-s~--~~~---------~~~~dl~~~~~~~------~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~ 146 (334)
+ +| |.+ -++.+++.+...+ +...|++|||+|++|...+++||+.+|+ |
T Consensus 82 i~~g~hpDv~~i~p~~~~i~id~iR~l~~~~~~~p~~~~~kv~ii~~a~~m~~~a~NalLKtLEE----------P---- 147 (395)
T PRK07940 82 VLAGTHPDVRVVVPEGLSIGVDEVREIVQIAARRPTTGRWRIVVIEDADRLTERAANALLKAVEE----------P---- 147 (395)
T ss_pred HHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECHHHHCHHHHHHHHHHHCC----------C----
T ss_conf 87689987189826877688999999999985273037955999807787489999999985217----------8----
Q ss_pred EECCCCCCEEEECCCCCCCCCHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 00466740055204554335545442012067326454799999877765412101111111233202210156788777
Q gi|254780552|r 147 VKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226 (334)
Q Consensus 147 ~~~~~~~f~lI~ATt~~~~l~~~l~sR~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~Gd~R~AlnlL 226 (334)
.+..+||++||+++++.+.++|||. +++|.+++.+++.+.+.+. ..++++....+|..|+|..-.|+.+.
T Consensus 148 ----p~~~~fiL~t~~~~~llpTI~SRcq-~~~f~~~~~~~i~~~L~~~-----~gi~~~~A~~aA~~s~G~igrA~~la 217 (395)
T PRK07940 148 ----PPRTVWLLCAPSVEDVLPTIRSRCR-HVALRTPSVEAVADVLVRR-----DGVDPETAQWAARASGGHIGRARRLA 217 (395)
T ss_pred ----CCCEEEEEEECCHHHHHHHHHHHHE-ECCCCCCCHHHHHHHHHHC-----CCCCHHHHHHHHHHHCCCHHHHHHHH
T ss_conf ----8886999873997874468874400-0237999999999999870-----19998999999998089889999980
No 45
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.95 E-value=7.4e-27 Score=183.75 Aligned_cols=213 Identities=26% Similarity=0.333 Sum_probs=154.5
Q ss_pred CCC-CHHHHCCHHHHHHHHHHHHHHHHHC-------C-CCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC-
Q ss_conf 789-8778239799999999999986614-------6-77670799737885577899999986189853125764433-
Q gi|254780552|r 23 RPR-TLEEFTGQVEACSNLKVFIEAAKAR-------A-EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK- 92 (334)
Q Consensus 23 RP~-~l~dviGQ~~~~~~l~~~i~a~~~~-------~-~~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~~~~~~- 92 (334)
+|. +|+|+-|.+++++.++-+++.-..+ | .++.-+|||||||||||++|+++|++++++|..++++.+-.
T Consensus 126 ~P~v~~~dIGGl~~~k~el~E~velPl~~pe~f~~~Gi~pPkGvLLyGPPGtGKTllAkAvA~e~~~~fi~v~~s~l~sk 205 (390)
T PRK03992 126 SPDVTYEDIGGLDEQIREVREAVELPLKNPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQK 205 (390)
T ss_pred CCCCCHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEHHHHHHC
T ss_conf 99998466149899999999999998659899997699999727868989997899999999874888799667997524
Q ss_pred -----HHHHHHHHHHHH--CCCHHHHHHHHHCCHH-----------HHH---HHHHHHHCCCCCCCCCCCCCCCEEECCC
Q ss_conf -----467666666410--1637888757616989-----------999---9999863475100256787652000466
Q gi|254780552|r 93 -----AGDLAALLTNLE--DRDVLFIDEIHRLSII-----------VEE---ILYPAMEDFQLDLMVGEGPSARSVKINL 151 (334)
Q Consensus 93 -----~~dl~~~~~~~~--~~~vlfiDEihrl~~~-----------~q~---~Ll~~mE~~~i~i~~~~~~~a~~~~~~~ 151 (334)
.+-++.+|..+. ..+|+|||||+.+... .|- .||.-|+.+. . .
T Consensus 206 ~vGesek~vr~lF~~Ar~~aP~IiFiDEiDai~~~R~~~~~~g~~ev~r~l~qLL~emDG~~----------~------~ 269 (390)
T PRK03992 206 FIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFD----------P------R 269 (390)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCC----------C------C
T ss_conf 54179999999999999709908971432566335677888620889999999999744877----------7------7
Q ss_pred CCCEEEECCCCCCCCCHHHHH--CCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHH-HHHHHHCCCCC-CHHHHHHHHH
Q ss_conf 740055204554335545442--0120673264547999998777654121011111-11233202210-1567887775
Q gi|254780552|r 152 SRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDE-AACEIAMRSRG-TPRIAGRLLR 227 (334)
Q Consensus 152 ~~f~lI~ATt~~~~l~~~l~s--R~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~-al~~ia~~s~G-d~R~AlnlLe 227 (334)
..+.+|+|||+|..|.++|+- ||...+.+..++.++-.+|++-.++.. +++++ -+..||+...| +..+.-+++.
T Consensus 270 ~~V~VIaATNrpd~LDpAllRpGRFDr~I~iplPd~~~R~~Ilki~~~~~--~l~~dvdl~~lA~~T~G~SGADI~~lc~ 347 (390)
T PRK03992 270 GNVKIIAATNRPDILDPALLRPGRFDRIIEVPLPDEEGRLEILKIHTRKM--NLADDVDLEELAELTEGASGADLKAICT 347 (390)
T ss_pred CCEEEEEECCCCHHCCHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHCCC--CCCCCCCHHHHHHHCCCCCHHHHHHHHH
T ss_conf 88279960698100597775477652388708949999999999984799--9998889999997687998999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 43334554158864277878765421
Q gi|254780552|r 228 RVRDFAEVAHAKTITREIADAALLRL 253 (334)
Q Consensus 228 ~v~d~a~~~~~~~i~~~~~~~~l~~~ 253 (334)
.+.-+|.-++...|+.++..+++...
T Consensus 348 EA~m~Air~~r~~i~~~Df~~Ai~kv 373 (390)
T PRK03992 348 EAGMFAIRDDRTEVTMEDFLKAIEKV 373 (390)
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf 99999998589860899999999999
No 46
>TIGR02881 spore_V_K stage V sporulation protein K; InterPro: IPR014232 Proteins in this entry include the stage V sporulation protein K (SpoVK), a close homologue of the Rubisco expression protein CbbX (IPR000470 from INTERPRO), and are members of an ATPase family associated with various cellular activities. These proteins are strictly limited to bacterial endospore-forming species, but are not found universally among members of this group; they are missing from the Clostridium species..
Probab=99.95 E-value=1.7e-26 Score=181.55 Aligned_cols=196 Identities=29% Similarity=0.388 Sum_probs=135.0
Q ss_pred CCHHHHCCHHHHHHHHHH---HHHHHHHC-------CCCCCCEEEECCCCCCHHHHHHHHHHHC---CCCCCCCCCCCCC
Q ss_conf 987782397999999999---99986614-------6776707997378855778999999861---8985312576443
Q gi|254780552|r 25 RTLEEFTGQVEACSNLKV---FIEAAKAR-------AEALDHVLFVGPPGLGKTTLAQVVAREL---GVNFRSTSGPVIA 91 (334)
Q Consensus 25 ~~l~dviGQ~~~~~~l~~---~i~a~~~~-------~~~~~h~Lf~GPpG~GKTtlA~iiA~~l---~~~~~~~s~~~~~ 91 (334)
+.|+.+||.+++|..++- |+.-..+| ++..=||+|-|.|||||||.||+||+-+ |+ -.-|+.++
T Consensus 3 ~EL~~~vGL~~vK~~i~EiYA~i~i~~kR~~~GLk~~~~~LHMiFKGNPGTGKTTVAR~~gklf~emnv---L~KGH~iE 79 (261)
T TIGR02881 3 RELSRLVGLDEVKELIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARLLGKLFKEMNV---LSKGHLIE 79 (261)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCC---CCCCCEEE
T ss_conf 235640488899999999999999988887510114884478774278668438999999999853375---67886788
Q ss_pred -CHHHHHHH------------HHHHHCCCHHHHHHHHHCC--------HHHHHHHHHHHHCCCCCCCCCCCCCCCEEECC
Q ss_conf -34676666------------6641016378887576169--------89999999986347510025678765200046
Q gi|254780552|r 92 -KAGDLAAL------------LTNLEDRDVLFIDEIHRLS--------IIVEEILYPAMEDFQLDLMVGEGPSARSVKIN 150 (334)
Q Consensus 92 -~~~dl~~~------------~~~~~~~~vlfiDEihrl~--------~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~ 150 (334)
.-.|+++- +..+ -|.||||||+++|+ |.+-|.|-..|||.+
T Consensus 80 ~ERADLVGEYIGHTAqkTRe~~kkA-~GGvLFiDEAYSLaRGGEKDFGKEAIDtLVK~mEd~~----------------- 141 (261)
T TIGR02881 80 VERADLVGEYIGHTAQKTREVIKKA-LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKAMEDQR----------------- 141 (261)
T ss_pred EEECCCCCCCCCCHHHHHHHHHHHH-CCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCC-----------------
T ss_conf 7622212232030048999999986-3880055777776148888766208889999876156-----------------
Q ss_pred CCCCEEEECCCCCC-----CCCHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 67400552045543-----3554544201206732645479999987776541210111111123320221015678877
Q gi|254780552|r 151 LSRFTLIAATTRVG-----LLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225 (334)
Q Consensus 151 ~~~f~lI~ATt~~~-----~l~~~l~sR~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~Gd~R~Alnl 225 (334)
..|+||.|-..-. .+||-|+|||++.+.|.-|+.+||.+|+++..+.-...++++|...|-..-..
T Consensus 142 -~~lvlILAGY~~EM~yFL~~NPGL~SRFPi~i~FPdY~~eeL~~Ia~~m~~~ReY~Lt~~A~~~lr~~l~~-------- 212 (261)
T TIGR02881 142 -NELVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLAK-------- 212 (261)
T ss_pred -CCEEEEEECCHHHHHHHHHCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--------
T ss_conf -98689970876899998620779777665054188998889999999998646422578899999999741--------
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 754333455415886427787876542
Q gi|254780552|r 226 LRRVRDFAEVAHAKTITREIADAALLR 252 (334)
Q Consensus 226 Le~v~d~a~~~~~~~i~~~~~~~~l~~ 252 (334)
..+. -....++.+.-.+.+++|+-.
T Consensus 213 ~~~~--~~~~~sNaR~vRN~iE~AIR~ 237 (261)
T TIGR02881 213 VDQL--SSREFSNARYVRNIIEKAIRR 237 (261)
T ss_pred HHHH--HHCCCCCCCHHHHHHHHHHHH
T ss_conf 2444--210057620124288999999
No 47
>TIGR00368 TIGR00368 Mg chelatase homolog; InterPro: IPR004482 This family of bacterial proteins are variously described as 'hypothetical protein yifB', 'competence protein', 'hypothetical protein' or 'Mg chelatase-related protein'. These proteins are a subset of the magnesium chelatase, ChlI subunit family and either belong to or show significant homology to the non-peptidase homologs of the MEROPS peptidase family S16 (lon protease family, clan SF), IPR001984 from INTERPRO. .
Probab=99.94 E-value=1.1e-27 Score=188.87 Aligned_cols=228 Identities=26% Similarity=0.358 Sum_probs=154.9
Q ss_pred CCCCCCCCHHHHHCCC--CCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHC----CCCC
Q ss_conf 8444412057875078--987782397999999999999866146776707997378855778999999861----8985
Q gi|254780552|r 9 SRNVSQEDADISLLRP--RTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL----GVNF 82 (334)
Q Consensus 9 ~~~~~~~~~~~~~lRP--~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l----~~~~ 82 (334)
..+.+..++..+.=++ -.|.||+||+|.|..|.++. +-. +++||.||||||||++|+.+-.-| +.+.
T Consensus 173 ~~t~~~~~~~~~~s~~~~~DL~dv~GQ~~akRAleIAa--AGG-----HNlll~GPPGsGKTmla~r~~giLP~L~~~Ea 245 (505)
T TIGR00368 173 PRTNTKAKSIINVSLIIDLDLKDVKGQQHAKRALEIAA--AGG-----HNLLLLGPPGSGKTMLASRLQGILPPLTNEEA 245 (505)
T ss_pred CCCCCCCCHHHHHCCHHHCCCCCCCCHHHCCHHHHHHH--HCC-----CCEEEECCCCCCHHHHHHHHHCCCCCCCCHHH
T ss_conf 75455531034413201044322545101102677753--135-----64376782496268999875105786451266
Q ss_pred -----------------------------CCCCCC------CCCCHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHH
Q ss_conf -----------------------------312576------443346766666641016378887576169899999999
Q gi|254780552|r 83 -----------------------------RSTSGP------VIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYP 127 (334)
Q Consensus 83 -----------------------------~~~s~~------~~~~~~dl~~~~~~~~~~~vlfiDEihrl~~~~q~~Ll~ 127 (334)
|+-|.+ .+-+||++ ++.++.|||+||.-+|.|..-|+|..
T Consensus 246 lE~~~v~S~~~~l~~~~~~~rQRPFR~PHHsAS~~~lvGGG~~P~PGEi-----SLAhnGvLFLDEl~EF~r~vL~~LR~ 320 (505)
T TIGR00368 246 LETARVLSLVGKLIDRKQWKRQRPFRSPHHSASKPALVGGGSIPKPGEI-----SLAHNGVLFLDELPEFKRKVLDALRE 320 (505)
T ss_pred HHHHHHHHHHHHHHHCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCE-----EHHCCCCHHHHCCHHHHHHHHHHHCC
T ss_conf 6678888888757652301106867786500256664058752228512-----02005410432220446789987178
Q ss_pred HHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCC-----------------------CCCCHHHHHCCCCEEECCCCC
Q ss_conf 863475100256787652000466740055204554-----------------------335545442012067326454
Q gi|254780552|r 128 AMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV-----------------------GLLTNPLQDRFGIPIRLNFYE 184 (334)
Q Consensus 128 ~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~-----------------------~~l~~~l~sR~~~~~~~~~~~ 184 (334)
.+||+.|.|--++ ++..+. ...|+||+|||-. .+|+.|++|||++......+.
T Consensus 321 PlEdg~i~iSRa~---~ki~ky-PA~FqL~aAmNpcPcG~~~~~~~~c~cSp~q~~~Yl~kLsgp~LDRiDl~v~v~~~~ 396 (505)
T TIGR00368 321 PLEDGSISISRAK---AKIFKY-PARFQLVAAMNPCPCGHYGGKITHCRCSPQQISRYLNKLSGPFLDRIDLSVEVPLLP 396 (505)
T ss_pred CCCCCCEEEEECC---CHHHCC-CHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHCHHCCEECCCCCC
T ss_conf 7426706886322---010008-724556756178877677787444658978999998742711200011400137888
Q ss_pred -HHHHHHHH----------HHH-----------HHHCCC---------------HHH---HHHHHHHHCCCCCCHHHHHH
Q ss_conf -79999987----------776-----------541210---------------111---11112332022101567887
Q gi|254780552|r 185 -IEDLKTIV----------QRG-----------AKLTGL---------------AVT---DEAACEIAMRSRGTPRIAGR 224 (334)
Q Consensus 185 -~~el~~il----------~~~-----------~~~~~i---------------~~~---~~al~~ia~~s~Gd~R~Aln 224 (334)
++.|.+-. +|+ .+.-+| +++ ..-|..+...-+=+.|..-+
T Consensus 397 n~~~L~~t~~~GESS~~vkqrv~kaR~~q~~R~~k~A~I~~Na~L~s~~i~~FC~L~~~~~~~Le~~L~kLglS~RA~~r 476 (505)
T TIGR00368 397 NPGLLSETGVRGESSAEVKQRVLKAREIQIKRYEKFAKINLNAELNSDEIEQFCKLDEKDANLLEGALNKLGLSVRATHR 476 (505)
T ss_pred CCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 74134424789952678999999999999973035455033733582456540571568899999999870851668876
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 7754333455415886427787876542
Q gi|254780552|r 225 LLRRVRDFAEVAHAKTITREIADAALLR 252 (334)
Q Consensus 225 lLe~v~d~a~~~~~~~i~~~~~~~~l~~ 252 (334)
+|+..|..|.+...+.|+.++..||+++
T Consensus 477 iLKvaRTIaDL~~~~~I~~~hL~EAi~Y 504 (505)
T TIGR00368 477 ILKVARTIADLKEEENISREHLAEAIEY 504 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 8878864663200035789999998504
No 48
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.94 E-value=3.2e-26 Score=179.86 Aligned_cols=211 Identities=23% Similarity=0.319 Sum_probs=155.9
Q ss_pred CCHHHHCCHHHHHHHHHHHHHHHH-------HCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC------
Q ss_conf 987782397999999999999866-------1467767079973788557789999998618985312576443------
Q gi|254780552|r 25 RTLEEFTGQVEACSNLKVFIEAAK-------ARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA------ 91 (334)
Q Consensus 25 ~~l~dviGQ~~~~~~l~~~i~a~~-------~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~~~~~------ 91 (334)
.+|+||.|++++|..|.-.++--+ ...+.+.-+||+||||||||.||+++|.|.+++|..+||+.+.
T Consensus 149 vtF~DVaG~~eaK~el~EiVdfLk~P~k~~~~Gak~PkGvLL~GPPGtGKTlLAkAvAgEa~vpF~~~sgsef~e~~vGv 228 (644)
T PRK10733 149 TTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGV 228 (644)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCEEEEEEHHHHHHEEEEC
T ss_conf 77104089789999999999981297999974997998517779899877899999864559808997847730222530
Q ss_pred CHHHHHHHHHHHHC--CCHHHHHHHHHCCHH--------------HHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCE
Q ss_conf 34676666664101--637888757616989--------------99999998634751002567876520004667400
Q gi|254780552|r 92 KAGDLAALLTNLED--RDVLFIDEIHRLSII--------------VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFT 155 (334)
Q Consensus 92 ~~~dl~~~~~~~~~--~~vlfiDEihrl~~~--------------~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~ 155 (334)
.++-++.+|..++. .+|+|||||+.+.+. ..+.||.-|+.|.- + ..+.
T Consensus 229 ga~rVR~lF~~Ar~~aP~IIFIDEiDaig~~R~~~~~gg~~e~~~tlNqlL~EmDGf~~--------~--------~~Vi 292 (644)
T PRK10733 229 GASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG--------N--------EGII 292 (644)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEECHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC--------C--------CCEE
T ss_conf 68999999999996699799995322036667898889832888789999999548888--------7--------8769
Q ss_pred EEECCCCCCCCCHHHHH--CCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHH-HHHHHCCCCC-CHHHHHHHHHHHHH
Q ss_conf 55204554335545442--01206732645479999987776541210111111-1233202210-15678877754333
Q gi|254780552|r 156 LIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEA-ACEIAMRSRG-TPRIAGRLLRRVRD 231 (334)
Q Consensus 156 lI~ATt~~~~l~~~l~s--R~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~a-l~~ia~~s~G-d~R~AlnlLe~v~d 231 (334)
+|+|||++..|.++|+- ||..++.+..++.++-.+|++...+... +++++ +..||+..-| +.=+.-|++.-+.-
T Consensus 293 viaATNrpd~LD~ALlRPGRFDr~I~V~lPd~~~R~~ILkvh~~~~~--l~~dvdl~~lA~~T~GfSGADLaNlvNEAAl 370 (644)
T PRK10733 293 VIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVP--LAPDIDAAIIARGTPGFSGADLANLVNEAAL 370 (644)
T ss_pred EEEECCCCCCCCHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHCCCC--CCCCCCHHHHHCCCCCCCHHHHCCHHHHHHH
T ss_conf 99626997554777716888655999779898899999999964887--7731158988445998670333259999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 4554158864277878765421
Q gi|254780552|r 232 FAEVAHAKTITREIADAALLRL 253 (334)
Q Consensus 232 ~a~~~~~~~i~~~~~~~~l~~~ 253 (334)
+|.-++...|+.++.++++...
T Consensus 371 ~AaR~~k~~It~~d~e~A~drV 392 (644)
T PRK10733 371 FAARGNKRVVSMVEFEKAKDKI 392 (644)
T ss_pred HHHHHCCCCCCHHHHHHHHHHH
T ss_conf 9987087543076689988885
No 49
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.94 E-value=2.4e-25 Score=174.52 Aligned_cols=218 Identities=27% Similarity=0.348 Sum_probs=146.4
Q ss_pred CCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHC-------CCCCCCCC---------
Q ss_conf 78987782397999999999999866146776707997378855778999999861-------89853125---------
Q gi|254780552|r 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-------GVNFRSTS--------- 86 (334)
Q Consensus 23 RP~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l-------~~~~~~~s--------- 86 (334)
||--|.+|+||+++|..|.+. +.. ...+|+|+.|||||||||+||.++.-| +|++....
T Consensus 3 ~~~Pfs~IvGQe~~K~AL~la--av~---p~~ggvLi~G~~GtgKStlaR~l~~iLP~~~~~e~~~~~~~~~~~~~~~~~ 77 (334)
T PRK13407 3 KPFPFSAIVGQEEMKQAMVLT--AID---PGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPEWAE 77 (334)
T ss_pred CCCCHHHHCCCHHHHHHHHHH--HCC---CCCCEEEEECCCCCCHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCHHHHH
T ss_conf 999923764939999999997--727---898608997899865999999999728995110367556677421133431
Q ss_pred ----------CCCCC-----------CHHHHH------------HHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHCCC
Q ss_conf ----------76443-----------346766------------666641016378887576169899999999863475
Q gi|254780552|r 87 ----------GPVIA-----------KAGDLA------------ALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 (334)
Q Consensus 87 ----------~~~~~-----------~~~dl~------------~~~~~~~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~ 133 (334)
.|.++ +.-|+. +.++.+ ++.|||+|||+.|+...+|+|+.++|+|.
T Consensus 78 ~~~~~~~~~~~p~v~lPl~atedr~~G~ldie~al~~G~~~~~PGlLa~A-h~GVLylDEinll~~~vld~Ll~~~e~G~ 156 (334)
T PRK13407 78 VSSTTMVERPTPVIDLPLGATEDRVVGALDIERALTRGEKAFEPGLLARA-NRGYLYIDEVNLLEDHIVDLLLDVAQSGE 156 (334)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCHHHHC-CCCEEEEECHHHCCHHHHHHHHHHHHCCC
T ss_conf 14555344899876789999986644742188886269877886054340-28867872053333889999998871695
Q ss_pred CCCCCCCCCCCCEEECCCCCCEEEECCCCC-CCCCHHHHHCCCCEEECCCCC-HHHHHHHHHHH----------------
Q ss_conf 100256787652000466740055204554-335545442012067326454-79999987776----------------
Q gi|254780552|r 134 LDLMVGEGPSARSVKINLSRFTLIAATTRV-GLLTNPLQDRFGIPIRLNFYE-IEDLKTIVQRG---------------- 195 (334)
Q Consensus 134 i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~-~~l~~~l~sR~~~~~~~~~~~-~~el~~il~~~---------------- 195 (334)
+.|-- +| .+++. ..+|+|||+.|-. +.+.++++|||+++....... .++-.+|+++.
T Consensus 157 ~~IeR-eg---~s~~~-ParF~LVatmNPeEg~Lrp~lLDRf~l~v~v~~~~~~~~r~eiv~r~~~~~~~~~~~~~~~~~ 231 (334)
T PRK13407 157 NVVER-EG---LSIRH-PARFVLVGSGNPEEGELRPQLLDRFGLSVEVRSPRDVETRVEVITRRDAYDADHDAFMAKWGA 231 (334)
T ss_pred EEEEE-CC---EEEEC-CCCCEEEEEECCCCCCCCHHHHHHHCEEEEECCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_conf 79997-76---34603-662658982088877759899836100687148788777668899999865387999998898
Q ss_pred -------------HHHCCCHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf -------------54121011111112332022----101567887775433345541588642778787654
Q gi|254780552|r 196 -------------AKLTGLAVTDEAACEIAMRS----RGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251 (334)
Q Consensus 196 -------------~~~~~i~~~~~al~~ia~~s----~Gd~R~AlnlLe~v~d~a~~~~~~~i~~~~~~~~l~ 251 (334)
....++.+.++.+.+++..+ --..|.-+.+++.++..|...|...|+.++++.+..
T Consensus 232 e~~~l~~~i~~Ar~~l~~v~~~d~~~~~~~~~~~~~~~~g~Ra~i~l~r~ARa~AaL~Gr~~V~~~dl~~aa~ 304 (334)
T PRK13407 232 EDMQLRGRILGARAALPQLKTPDTVLHDCAALCIALGSDGLRGELTLLRAARAQAAFEGAETVGRSHLRSVAT 304 (334)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf 9999999999998751146899999999999999858987109999999999999974999789999999999
No 50
>KOG0730 consensus
Probab=99.93 E-value=2.7e-25 Score=174.24 Aligned_cols=210 Identities=25% Similarity=0.322 Sum_probs=148.3
Q ss_pred CCCHHHHCCHHHHHHHHHHHHHHHHHCC--------CCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC--H
Q ss_conf 8987782397999999999999866146--------77670799737885577899999986189853125764433--4
Q gi|254780552|r 24 PRTLEEFTGQVEACSNLKVFIEAAKARA--------EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--A 93 (334)
Q Consensus 24 P~~l~dviGQ~~~~~~l~~~i~a~~~~~--------~~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~~~~~~--~ 93 (334)
.-+|+|+-|++++|..++..+++..++. .++.-+|||||||||||++|+++|++.+++|..++||.+-. +
T Consensus 430 ~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~v 509 (693)
T KOG0730 430 NVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYV 509 (693)
T ss_pred CCCHHHCCCHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEECCCHHHHHHHC
T ss_conf 87822045789999999999861665659998725788754777789986247899998646358726415789987751
Q ss_pred ----HHHHHHHHHHH--CCCHHHHHHHHHCCHHH-------HH----HHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEE
Q ss_conf ----67666666410--16378887576169899-------99----999986347510025678765200046674005
Q gi|254780552|r 94 ----GDLAALLTNLE--DRDVLFIDEIHRLSIIV-------EE----ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTL 156 (334)
Q Consensus 94 ----~dl~~~~~~~~--~~~vlfiDEihrl~~~~-------q~----~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~l 156 (334)
+-++.+|..+. ..+|+|.|||+.+.+.. ++ .||.-|... ..+ ..+.+
T Consensus 510 GeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~----------e~~------k~V~V 573 (693)
T KOG0730 510 GESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGL----------EAL------KNVLV 573 (693)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCC----------CCC------CCEEE
T ss_conf 82589999999998626983774466666663047875514899999999870041----------014------70899
Q ss_pred EECCCCCCCCCHHHHH--CCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHH-HHHHHHCCCCC-CHHHHHHHHHHHHHH
Q ss_conf 5204554335545442--0120673264547999998777654121011111-11233202210-156788777543334
Q gi|254780552|r 157 IAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDE-AACEIAMRSRG-TPRIAGRLLRRVRDF 232 (334)
Q Consensus 157 I~ATt~~~~l~~~l~s--R~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~-al~~ia~~s~G-d~R~AlnlLe~v~d~ 232 (334)
|+|||+|..|.++|++ ||.-++++...+.+--.+|++..++ +.+++++ -+..||..-+| +.+.-.++++.+..+
T Consensus 574 iAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~k--kmp~~~~vdl~~La~~T~g~SGAel~~lCq~A~~~ 651 (693)
T KOG0730 574 IAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAK--KMPFSEDVDLEELAQATEGYSGAEIVAVCQEAALL 651 (693)
T ss_pred EECCCCHHHCCHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHH--CCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 9505881012697759865330575158347889999999973--39998655699999985467738999999999999
Q ss_pred HHHHC--CCCCCHHHHHHHHH
Q ss_conf 55415--88642778787654
Q gi|254780552|r 233 AEVAH--AKTITREIADAALL 251 (334)
Q Consensus 233 a~~~~--~~~i~~~~~~~~l~ 251 (334)
|.-+. ...|..++.+++++
T Consensus 652 a~~e~i~a~~i~~~hf~~al~ 672 (693)
T KOG0730 652 ALRESIEATEITWQHFEEALK 672 (693)
T ss_pred HHHHHCCCCCCCHHHHHHHHH
T ss_conf 998752654344899999998
No 51
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.93 E-value=1.7e-25 Score=175.42 Aligned_cols=171 Identities=23% Similarity=0.249 Sum_probs=126.3
Q ss_pred CCHHHHCC-HHHHHHHHHHHHHHHHHCCCCCCCE-EEECCCCCCHHHHHHHHHHHCCCC-------CC------CCC---
Q ss_conf 98778239-7999999999999866146776707-997378855778999999861898-------53------125---
Q gi|254780552|r 25 RTLEEFTG-QVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN-------FR------STS--- 86 (334)
Q Consensus 25 ~~l~dviG-Q~~~~~~l~~~i~a~~~~~~~~~h~-Lf~GPpG~GKTtlA~iiA~~l~~~-------~~------~~s--- 86 (334)
-+|++++| |+++++.|+.++... .++|. ||+||+|+||+++|+.+|+.+.|. |. .+.
T Consensus 2 ~~~~~~~~~Q~~i~~~L~~~i~~~-----rl~HA~Lf~Gp~G~GK~~~A~~~A~~LlC~~~~~~~~Cg~C~~C~~~~~~~ 76 (329)
T PRK08058 2 MTWEQLTALQPIVVKMLQNSIAKN-----RLAHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIESGN 76 (329)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCC-----CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCC
T ss_conf 977888831899999999999859-----966156557899988999999999997399999999887888999987699
Q ss_pred CC----------CCCCHHHHHHHHHHH------HCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECC
Q ss_conf 76----------443346766666641------01637888757616989999999986347510025678765200046
Q gi|254780552|r 87 GP----------VIAKAGDLAALLTNL------EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN 150 (334)
Q Consensus 87 ~~----------~~~~~~dl~~~~~~~------~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~ 150 (334)
-| .+ ++.+++.+...+ +...|++|||+|++|..++++||..+|+ |.
T Consensus 77 HPD~~~i~p~~~~i-~idqiR~L~~~~~~~p~~g~~KV~II~~Ae~m~~~AaNALLKtLEE----------Pp------- 138 (329)
T PRK08058 77 HPDVHLVAPDGQSI-KKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEE----------PS------- 138 (329)
T ss_pred CCCEEEECCCCCCC-CHHHHHHHHHHHCCCCCCCCCEEEEEECHHHHCHHHHHHHHHHHHC----------CC-------
T ss_conf 99767745661407-7999999999964387578867999734776299999999998646----------89-------
Q ss_pred CCCCEEEECCCCCCCCCHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 67400552045543355454420120673264547999998777654121011111112332022101567887775
Q gi|254780552|r 151 LSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227 (334)
Q Consensus 151 ~~~f~lI~ATt~~~~l~~~l~sR~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~Gd~R~AlnlLe 227 (334)
++..||++|+++.+|.++++|||. .++|.+++.+++.+.+.. .++ +++....++.. .|+++.|+.+++
T Consensus 139 -~~t~fIL~t~~~~~lLpTI~SRCq-~i~f~~~~~~~i~~~L~~----~~i--~~~~a~l~a~~-~gs~~~A~~l~~ 206 (329)
T PRK08058 139 -GDTTAILLTENKHQILPTILSRCQ-VVEFRPLPPESLIQRLQE----EGI--SESLATLLAQL-TNSVEEALALSE 206 (329)
T ss_pred -CCCEEEEEECCHHHHHHHHHHCCE-EEECCCCCHHHHHHHHHH----CCC--CHHHHHHHHHH-CCCHHHHHHHHC
T ss_conf -786799872996664368863142-565889999999999998----799--98999999987-899999998842
No 52
>TIGR00763 lon ATP-dependent protease La; InterPro: IPR004815 Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes . They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence . Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases . Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base . The geometric orientations of the catalytic residues are similar between families, despite different protein folds . The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) , . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This signature defines the bacterial and eukaryotic lon proteases, which are ATP-dependent serine peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SF). This family of sequences does not include the archaeal lon homologs, IPR004663 from INTERPRO. In the eukaryotes the majority of the proteins are located in the mitochondrial matrix , . In yeast, Pim1, is located in the mitochondrial matrix, is required for mitochondrial function, is constitutively expressed but is increased after thermal stress, suggesting that Pim1 may play a role in the heat shock response .; GO: 0004176 ATP-dependent peptidase activity, 0005524 ATP binding, 0006510 ATP-dependent proteolysis.
Probab=99.93 E-value=3.6e-27 Score=185.64 Aligned_cols=189 Identities=25% Similarity=0.403 Sum_probs=144.7
Q ss_pred CCCCC--CHHHHHCCCCCHHHHCCHHHHHHHHHHHHHHH-----------HHCCCCCCC-E-EEECCCCCCHHHHHHHHH
Q ss_conf 44412--05787507898778239799999999999986-----------614677670-7-997378855778999999
Q gi|254780552|r 11 NVSQE--DADISLLRPRTLEEFTGQVEACSNLKVFIEAA-----------KARAEALDH-V-LFVGPPGLGKTTLAQVVA 75 (334)
Q Consensus 11 ~~~~~--~~~~~~lRP~~l~dviGQ~~~~~~l~~~i~a~-----------~~~~~~~~h-~-Lf~GPpG~GKTtlA~iiA 75 (334)
..+++ +.++...|-.-=.|-.|.++||+++--|+.-. +.++..-+. + .|+|||||||||||+-||
T Consensus 392 ~~S~~f~n~Dl~~A~~~LD~DHYGL~~VK~RIlEYlAV~qllemrrkkkPkL~~~~~GpqIlClvGPPGVGKTSlg~SIA 471 (941)
T TIGR00763 392 KYSKEFDNLDLKRAKEILDEDHYGLKKVKERILEYLAVQQLLEMRRKKKPKLRGKMKGPQILCLVGPPGVGKTSLGKSIA 471 (941)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 14702665218999998316788887730341358889899987640364447788887678720726954222789999
Q ss_pred HHCCCCCCCCCCCCCCCHHHHHHH---------------HHHHH----CCCHHHHHHHHHCC--HHHH----HHHHHHHH
Q ss_conf 861898531257644334676666---------------66410----16378887576169--8999----99999863
Q gi|254780552|r 76 RELGVNFRSTSGPVIAKAGDLAAL---------------LTNLE----DRDVLFIDEIHRLS--IIVE----EILYPAME 130 (334)
Q Consensus 76 ~~l~~~~~~~s~~~~~~~~dl~~~---------------~~~~~----~~~vlfiDEihrl~--~~~q----~~Ll~~mE 130 (334)
++||.+|+.+| +.++.|.+.| ++.++ .|-|+.||||+-+. ...| .|||..++
T Consensus 472 ~ALnRkFvR~S---lGG~~DeAEIrGHRRTYvGAMPGriiQ~lk~~~t~NPl~LlDEIDK~~~~~~~~GDPaSALLEvLD 548 (941)
T TIGR00763 472 KALNRKFVRFS---LGGVRDEAEIRGHRRTYVGAMPGRIIQGLKKAKTKNPLILLDEIDKIGLKSSFRGDPASALLEVLD 548 (941)
T ss_pred HHHCCEEEEEE---ECCCEEHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCCHHHHHHHHCC
T ss_conf 99688049995---267220311278643203467257899987604158806862022001678865563788864128
Q ss_pred --------CCCCCCCCCCCCCCCEEECCCCCCE--EEECCCCCCCCCHHHHHCCCCEEECCCCCHHHHHHHHHHH-----
Q ss_conf --------4751002567876520004667400--5520455433554544201206732645479999987776-----
Q gi|254780552|r 131 --------DFQLDLMVGEGPSARSVKINLSRFT--LIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG----- 195 (334)
Q Consensus 131 --------~~~i~i~~~~~~~a~~~~~~~~~f~--lI~ATt~~~~l~~~l~sR~~~~~~~~~~~~~el~~il~~~----- 195 (334)
|+.+ -+++|++.+. ||++-|....||+|||||+- ++.+.-|+.+|=..|.++.
T Consensus 549 PEQN~~F~DHYl-----------dvp~DLS~V~CyFi~TAN~~d~IP~PLLDRME-vI~lsGY~~~EK~~IA~~yLiP~~ 616 (941)
T TIGR00763 549 PEQNNAFSDHYL-----------DVPFDLSKVLCYFIATANSIDTIPRPLLDRME-VIELSGYTEEEKLEIAKKYLIPKA 616 (941)
T ss_pred HHHCCCCCCCCC-----------CCCCCHHHHHHHEEECCCCCCCCCCCCCCCEE-EEECCCCCHHHHHHHHHHCCHHHH
T ss_conf 643604255300-----------23400420021000244757677722137402-452388876789999985471367
Q ss_pred -----HHHCCCHHHHHHHHHHHCC
Q ss_conf -----5412101111111233202
Q gi|254780552|r 196 -----AKLTGLAVTDEAACEIAMR 214 (334)
Q Consensus 196 -----~~~~~i~~~~~al~~ia~~ 214 (334)
.+..+++++++|+..|++.
T Consensus 617 ~~~~GL~~~~l~~~d~al~~lI~~ 640 (941)
T TIGR00763 617 LEDHGLKPDELKISDEALLLLIKY 640 (941)
T ss_pred HHHHCCCCCCEEECHHHHHHHHHH
T ss_conf 987088813221268999999987
No 53
>CHL00181 cbbX CbbX; Provisional
Probab=99.93 E-value=2.2e-25 Score=174.72 Aligned_cols=187 Identities=25% Similarity=0.249 Sum_probs=126.6
Q ss_pred CHH-HHCCHHHHHHHHHHH---HHHHHH---CC----CCCCCEEEECCCCCCHHHHHHHHHHHC---CC----CCCCCCC
Q ss_conf 877-823979999999999---998661---46----776707997378855778999999861---89----8531257
Q gi|254780552|r 26 TLE-EFTGQVEACSNLKVF---IEAAKA---RA----EALDHVLFVGPPGLGKTTLAQVVAREL---GV----NFRSTSG 87 (334)
Q Consensus 26 ~l~-dviGQ~~~~~~l~~~---i~a~~~---~~----~~~~h~Lf~GPpG~GKTtlA~iiA~~l---~~----~~~~~s~ 87 (334)
.++ ++||.+.||..++.+ ++..+. .| ....|++|.|||||||||+||++|+-+ |. .+++++.
T Consensus 20 eLd~eliGL~~VK~~v~~l~~~~~~~~~R~~~Gl~~~~~s~h~vF~GnPGTGKTTVARl~a~il~~lG~L~~g~vve~~r 99 (287)
T CHL00181 20 ELDEELIGLVPVKTRIREIAALLLVDRLRKNLGLVSSSPGLHMSFTGSPGTGKTTVALKMADILYRLGYIKKGHLITVTR 99 (287)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECH
T ss_conf 99886469699999999999999999999987999888765388878998679999999999999869955895899535
Q ss_pred CCCC------CHHHHHHHHHHHHCCCHHHHHHHHHCC---------HHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCC
Q ss_conf 6443------346766666641016378887576169---------8999999998634751002567876520004667
Q gi|254780552|r 88 PVIA------KAGDLAALLTNLEDRDVLFIDEIHRLS---------IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152 (334)
Q Consensus 88 ~~~~------~~~dl~~~~~~~~~~~vlfiDEihrl~---------~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~ 152 (334)
..+- .......++.+ ..+.||||||+|.|. +.+-+.|+..||+.+-
T Consensus 100 ~dLvg~yvG~Ta~kt~~~i~~-a~GGVLfIDEAY~L~~~~~~~dfg~eaidtLl~~me~~~~------------------ 160 (287)
T CHL00181 100 DDLVGQYIGHTAPKTKEVLKK-AMGGVLFIDEAYYLYKPDNERDYGAEAIEILLQVMENQRD------------------ 160 (287)
T ss_pred HHHCCCCCCCCHHHHHHHHHH-CCCCEEEEECHHHHCCCCCCCCCHHHHHHHHHHHHHHCCC------------------
T ss_conf 884163535216999999996-4598799824465357889998379999999999870799------------------
Q ss_pred CCEEEECCCCCC-----CCCHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHC----C----CCCCH
Q ss_conf 400552045543-----3554544201206732645479999987776541210111111123320----2----21015
Q gi|254780552|r 153 RFTLIAATTRVG-----LLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAM----R----SRGTP 219 (334)
Q Consensus 153 ~f~lI~ATt~~~-----~l~~~l~sR~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~----~----s~Gd~ 219 (334)
.+++|.|-.... .-+|.|+|||...++|+.|+.+||.+|.+..++..++.+++++...+.. . .-|++
T Consensus 161 ~lvvI~AGY~~eM~~fl~~NpGL~sRf~~~i~F~dYt~~EL~~I~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~FGNa 240 (287)
T CHL00181 161 DLVVIFAGYKDRMDKFYESNPGLSSRVANHVDFPDYTPEELLQIAKMMLEEQQYQLTPEAEKVLLDYIKRRMEQPLFANA 240 (287)
T ss_pred CEEEEEECCHHHHHHHHHHCCCHHHHCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCH
T ss_conf 88999846789999999859047876887237798599999999999999869825879999999999985089998748
Q ss_pred HHHHHHHHHHHH
Q ss_conf 678877754333
Q gi|254780552|r 220 RIAGRLLRRVRD 231 (334)
Q Consensus 220 R~AlnlLe~v~d 231 (334)
|.+-|+++.+..
T Consensus 241 R~vrnl~e~a~~ 252 (287)
T CHL00181 241 RSVRNAIDRARM 252 (287)
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999999
No 54
>KOG0990 consensus
Probab=99.93 E-value=3.3e-26 Score=179.80 Aligned_cols=197 Identities=17% Similarity=0.186 Sum_probs=150.9
Q ss_pred CCCCCCCHHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCC------C
Q ss_conf 4444120578750789877823979999999999998661467767079973788557789999998618985------3
Q gi|254780552|r 10 RNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF------R 83 (334)
Q Consensus 10 ~~~~~~~~~~~~lRP~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~~------~ 83 (334)
.......++++.-||.+++|+++|++++.++..+... ..+||+|||||||+|||+.-...|..+.++. .
T Consensus 23 ~~~~~~~pwvekyrP~~l~dv~~~~ei~st~~~~~~~-----~~lPh~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~l 97 (360)
T KOG0990 23 QSPQYPQPWVEKYRPPFLGIVIKQEPIWSTENRYSGM-----PGLPHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLL 97 (360)
T ss_pred CCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHCCC-----CCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHH
T ss_conf 8845688876688982256673377212478886268-----88975343489988998736665665058998246999
Q ss_pred CCCCCCCCCH---HHHHHHHHHHH---------CCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCC
Q ss_conf 1257644334---67666666410---------16378887576169899999999863475100256787652000466
Q gi|254780552|r 84 STSGPVIAKA---GDLAALLTNLE---------DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINL 151 (334)
Q Consensus 84 ~~s~~~~~~~---~dl~~~~~~~~---------~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~ 151 (334)
+.++++-..+ ..-...+.... .-..+++||.+.+++.+|++|....|.+...
T Consensus 98 elnaSd~rgid~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~~AQnALRRviek~t~n---------------- 161 (360)
T KOG0990 98 ELNASDDRGIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTRDAQNALRRVIEKYTAN---------------- 161 (360)
T ss_pred HHHCCCCCCCCCHHHHHHHHHHHCCCEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCC----------------
T ss_conf 8643676688614788898776416400024676158873341376698999999999871332----------------
Q ss_pred CCCEEEECCCCCCCCCHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 7400552045543355454420120673264547999998777654121011111112332022101567887775433
Q gi|254780552|r 152 SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230 (334)
Q Consensus 152 ~~f~lI~ATt~~~~l~~~l~sR~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~Gd~R~AlnlLe~v~ 230 (334)
-.|++ -.+-+.++.+|++|||+ .++|.+++......++..+++.+..+.++++...+++.|.||+|.|+|.|+.+.
T Consensus 162 ~rF~i--i~n~~~ki~pa~qsRct-rfrf~pl~~~~~~~r~shi~e~e~~~~~~~~~~a~~r~s~gDmr~a~n~Lqs~~ 237 (360)
T KOG0990 162 TRFAT--ISNPPQKIHPAQQSRCT-RFRFAPLTMAQQTERQSHIRESEQKETNPEGYSALGRLSVGDMRVALNYLQSIL 237 (360)
T ss_pred EEEEE--ECCCHHHCCCHHHCCCC-CCCCCCCCHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 37998--61676446814641044-578788875442467888871531103878899999986777999999999999
No 55
>PRK09862 putative ATP-dependent protease; Provisional
Probab=99.92 E-value=1.2e-24 Score=170.13 Aligned_cols=217 Identities=27% Similarity=0.381 Sum_probs=147.4
Q ss_pred CCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCCC----------CCCCCCC-------
Q ss_conf 98778239799999999999986614677670799737885577899999986189----------8531257-------
Q gi|254780552|r 25 RTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV----------NFRSTSG------- 87 (334)
Q Consensus 25 ~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~~----------~~~~~s~------- 87 (334)
..|.||.||+.++..+.++ |+- -+|+||.||||+|||++|+.+..-|-- .++++.+
T Consensus 188 ~D~~dv~Gq~~akraleIA--AAG-----gHnlLl~GpPG~GKTMlA~rlp~ILPpLt~~e~lEv~~I~Svag~~~~~~~ 260 (506)
T PRK09862 188 HDLSDVVGQEQGKRGLEIT--AAG-----GHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQ 260 (506)
T ss_pred CCHHHHCCCHHHHHHHHHH--HCC-----CCCEEEECCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 6756536979999999997--446-----886598769994598999775123899898999999999987189877775
Q ss_pred ----C-----------------CCCCHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCE
Q ss_conf ----6-----------------4433467666666410163788875761698999999998634751002567876520
Q gi|254780552|r 88 ----P-----------------VIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARS 146 (334)
Q Consensus 88 ----~-----------------~~~~~~dl~~~~~~~~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~ 146 (334)
| ...+++++ ++.++.|||+||..+|++...|+|...||+++|.|.-.. .+
T Consensus 261 ~~~rPfR~PHHs~S~~aliGGG~~~~PGEI-----SLAH~GVLFLDElpEF~r~vLe~LRqPLE~g~I~IsRa~----~~ 331 (506)
T PRK09862 261 WRQRPFRSPHHSASLTAMVGGGAIPGPGEI-----SLAHNGVLFLDELPEFERRTLDALREPIESGQIHLSRTR----AK 331 (506)
T ss_pred CCCCCEECCCCCCCHHHHHCCCCCCCCCCE-----EECCCCEEEECCHHCCCHHHHHHHHHHHCCCEEEEEECC----CE
T ss_conf 466850378876547666379999999722-----213575788455000688899987762247759999668----67
Q ss_pred EECCCCCCEEEECCCCC---------------------CCCCHHHHHCCCCEEECCCCCHH-------------HHHHHH
Q ss_conf 00466740055204554---------------------33554544201206732645479-------------999987
Q gi|254780552|r 147 VKINLSRFTLIAATTRV---------------------GLLTNPLQDRFGIPIRLNFYEIE-------------DLKTIV 192 (334)
Q Consensus 147 ~~~~~~~f~lI~ATt~~---------------------~~l~~~l~sR~~~~~~~~~~~~~-------------el~~il 192 (334)
++++ .+|.||+|+|-. .+|+.||+|||.++..+...+.+ ++.+.+
T Consensus 332 ~~~P-A~F~LVaAmNPCPCG~~~~~~~~Ct~~~~~rY~~rlSGPllDRiDl~v~v~~~~~~~l~~~~~~~esS~~ir~rV 410 (506)
T PRK09862 332 ITYP-ARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSKTVVPGESSATVKQRV 410 (506)
T ss_pred EEEC-CHHHHEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHCEEEEEECCCCCHHHHHCCCCCCCCHHHHHHHH
T ss_conf 9861-533111103788888899997778989999998656622130364799816899666632489898889999999
Q ss_pred HHH-------HHHCC-----------CHHHHHHHH---HHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 776-------54121-----------011111112---332022101567887775433345541588642778787654
Q gi|254780552|r 193 QRG-------AKLTG-----------LAVTDEAAC---EIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251 (334)
Q Consensus 193 ~~~-------~~~~~-----------i~~~~~al~---~ia~~s~Gd~R~AlnlLe~v~d~a~~~~~~~i~~~~~~~~l~ 251 (334)
... ....| ..+++++.. ..+.+-+-++|..-++|+.++..|.+++...|+.+++.++++
T Consensus 411 ~~Ar~~q~~R~~~~Na~l~~~~l~~~~~l~~~~~~~L~~a~~~~~lS~R~~~riLrvARTIADL~g~~~i~~~Hi~eAl~ 490 (506)
T PRK09862 411 MAARERQFKRQNKLNAWLDSPEIRQFCKLESEDARWLEETLIHLGLSIRAWQRLLKVARTIADIDQSDIITRQHLQEAVS 490 (506)
T ss_pred HHHHHHHHHHCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf 99999999855165657998999765499978999999999965957999999999999998555999999899999997
Q ss_pred HHHCCCC
Q ss_conf 2100000
Q gi|254780552|r 252 RLAIDKM 258 (334)
Q Consensus 252 ~~~id~~ 258 (334)
.-++|+.
T Consensus 491 yR~~d~~ 497 (506)
T PRK09862 491 YRAIDRL 497 (506)
T ss_pred HHHHHHH
T ss_conf 1767799
No 56
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.91 E-value=9e-24 Score=164.88 Aligned_cols=175 Identities=20% Similarity=0.238 Sum_probs=124.2
Q ss_pred CHHHHCCHHHHHHHHHHHHHHHHHCCCCCCC-EEEECCCCCCHHHHHHHHHHHCCCCC--------CCCC--CCCC----
Q ss_conf 8778239799999999999986614677670-79973788557789999998618985--------3125--7644----
Q gi|254780552|r 26 TLEEFTGQVEACSNLKVFIEAAKARAEALDH-VLFVGPPGLGKTTLAQVVARELGVNF--------RSTS--GPVI---- 90 (334)
Q Consensus 26 ~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h-~Lf~GPpG~GKTtlA~iiA~~l~~~~--------~~~s--~~~~---- 90 (334)
-|+|+|||++++..|+.+++.. + ++| +||+||.|+||+++|+.+|+.+.|.- ...+ -|.+
T Consensus 2 ~F~~iiGq~~~~~~L~~ai~~~----r-l~hAyLF~Gp~G~GK~~~A~~fa~~Ll~~~~~~~~~~~ri~~~nHPDl~~i~ 76 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIEQN----R-IAPAYLFAGPEGVGRKLAALRFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVE 76 (314)
T ss_pred CCCCCCCCHHHHHHHHHHHHCC----C-CCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCEEEEE
T ss_conf 8331259499999999999859----9-6744877899983299999999999857899997665587518999778860
Q ss_pred ---------------------------CCHHHHHHHHHHH------HCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCC
Q ss_conf ---------------------------3346766666641------0163788875761698999999998634751002
Q gi|254780552|r 91 ---------------------------AKAGDLAALLTNL------EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137 (334)
Q Consensus 91 ---------------------------~~~~dl~~~~~~~------~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~ 137 (334)
-++.+++.+...+ +.+.|++||++|+|+..++++||..+|+
T Consensus 77 P~~~~~g~~~~~~~~~~~~~~~~~~~~I~idqIR~l~~~l~~~p~~~~~kVvII~~ae~m~~~AaNaLLKtLEE------ 150 (314)
T PRK07399 77 PTYQHQGKLITASEAEEAGLKRKSPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEE------ 150 (314)
T ss_pred CCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCHHHCCHHHHHHHHHHHCC------
T ss_conf 56200345455778987653026877787999999999973188568847999889787199999999986147------
Q ss_pred CCCCCCCCEEECCCCCCEEEECCCCCCCCCHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCC
Q ss_conf 56787652000466740055204554335545442012067326454799999877765412101111111233202210
Q gi|254780552|r 138 VGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRG 217 (334)
Q Consensus 138 ~~~~~~a~~~~~~~~~f~lI~ATt~~~~l~~~l~sR~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~G 217 (334)
| ++-+||..|+.+.+|.++++|||. .++|.+++.+++.+++++........++.+++-. .|.|
T Consensus 151 ----P---------~~~~fILit~~~~~lLpTI~SRCQ-~i~F~~l~~~~i~~~L~~~~~~~~~~~~~~~l~~---~A~G 213 (314)
T PRK07399 151 ----P---------GNGTLILIAPSPESLLPTIVSRCQ-IIPFYRLSDEQLEQVLKRLGDNINEILDHPELLA---LAQG 213 (314)
T ss_pred ----C---------CCCEEEEEECCHHHCCHHHHCCCE-EEECCCCCHHHHHHHHHHCCCCCCCCCCHHHHHH---HHCC
T ss_conf ----8---------785699997993649146641875-6338998999999999971664331027899998---8179
Q ss_pred CHHHHHHHHHH
Q ss_conf 15678877754
Q gi|254780552|r 218 TPRIAGRLLRR 228 (334)
Q Consensus 218 d~R~AlnlLe~ 228 (334)
+|..|+...+.
T Consensus 214 spG~a~~~~~~ 224 (314)
T PRK07399 214 SPGAAIANIEQ 224 (314)
T ss_pred CHHHHHHHHHH
T ss_conf 97999999999
No 57
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.90 E-value=4.9e-24 Score=166.52 Aligned_cols=169 Identities=28% Similarity=0.330 Sum_probs=123.2
Q ss_pred HHHCCHHHHHHHHHHHHHHHHHCCCCCCC-EEEECCCCCCHHHHHHHHHHHCCC------------------------CC
Q ss_conf 78239799999999999986614677670-799737885577899999986189------------------------85
Q gi|254780552|r 28 EEFTGQVEACSNLKVFIEAAKARAEALDH-VLFVGPPGLGKTTLAQVVARELGV------------------------NF 82 (334)
Q Consensus 28 ~dviGQ~~~~~~l~~~i~a~~~~~~~~~h-~Lf~GPpG~GKTtlA~iiA~~l~~------------------------~~ 82 (334)
++++|+++++..+..+..... .++| +||+||||+||||+|..+|+++.| ++
T Consensus 1 ~~~~~~~~~~~~l~~~~~~~~----~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 76 (325)
T COG0470 1 DELVPWQEAVKRLLVQALESG----RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDF 76 (325)
T ss_pred CCCCCCHHHHHHHHHHHHHCC----CCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCE
T ss_conf 964332358999999998658----8876100379999978999999999965866433455200224443202568865
Q ss_pred CCCCCCCCCCH---HH-HHHHHH---HH---HCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCC
Q ss_conf 31257644334---67-666666---41---0163788875761698999999998634751002567876520004667
Q gi|254780552|r 83 RSTSGPVIAKA---GD-LAALLT---NL---EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152 (334)
Q Consensus 83 ~~~s~~~~~~~---~d-l~~~~~---~~---~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~ 152 (334)
.+++++...+. .+ ++.+.. .. +...|++|||++.++..++++|++.||+..- .
T Consensus 77 lel~~s~~~~~~i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~A~nallk~lEep~~----------~------- 139 (325)
T COG0470 77 LELNPSDLRKIDIIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTEDAANALLKTLEEPPK----------N------- 139 (325)
T ss_pred EEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCC----------C-------
T ss_conf 99773213333006999999998604465667726999732032698888767543324888----------7-------
Q ss_pred CCEEEECCCCCCCCCHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 400552045543355454420120673264547999998777654121011111112332022101567887775433
Q gi|254780552|r 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR 230 (334)
Q Consensus 153 ~f~lI~ATt~~~~l~~~l~sR~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~Gd~R~AlnlLe~v~ 230 (334)
-.||..|+++.++.+|++|||. .++|.+ ...+..| +..+ ++++..++..+.||+|.++|.|+.+.
T Consensus 140 -~~~il~~n~~~~il~tI~SRc~-~i~f~~--~~~~~~i----~~~e-----~~~l~~i~~~~~gd~r~~i~~lq~~~ 204 (325)
T COG0470 140 -TRFILITNDPSKILPTIRSRCQ-RIRFKP--PSRLEAI----AWLE-----DQGLEEIAAVAEGDARKAINPLQALA 204 (325)
T ss_pred -EEEEEEECCHHHCHHHHHHHEE-EEECCC--CCHHHHH----HHHH-----HHHHHHHHHHHCCHHHHHCCHHHHHH
T ss_conf -1699974985556478775607-887677--4188999----9850-----75799999870406887348999998
No 58
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.90 E-value=8.3e-23 Score=158.97 Aligned_cols=127 Identities=28% Similarity=0.296 Sum_probs=108.8
Q ss_pred CHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCC------------CCCCCHHHHHCC
Q ss_conf 37888757616989999999986347510025678765200046674005520455------------433554544201
Q gi|254780552|r 107 DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTR------------VGLLTNPLQDRF 174 (334)
Q Consensus 107 ~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~------------~~~l~~~l~sR~ 174 (334)
.||||||+|+|.-..+.+|-.+||+- +.| ++|.|||+ |+-||.-|+||.
T Consensus 293 GVLFIDEvHmLDIE~FsFlnrAlEse------------------~aP-Iii~AtNRG~~kiRGTd~~sPhGIP~DlLDRl 353 (450)
T COG1224 293 GVLFIDEVHMLDIECFSFLNRALESE------------------LAP-IIILATNRGMTKIRGTDIESPHGIPLDLLDRL 353 (450)
T ss_pred CEEEEECHHHHHHHHHHHHHHHHHCC------------------CCC-EEEEECCCCEEEECCCCCCCCCCCCHHHHHHE
T ss_conf 42897321345578999999876314------------------675-79997177500121667768888987666225
Q ss_pred CCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 20673264547999998777654121011111112332022-10156788777543334554158864277878765421
Q gi|254780552|r 175 GIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRS-RGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253 (334)
Q Consensus 175 ~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s-~Gd~R~AlnlLe~v~d~a~~~~~~~i~~~~~~~~l~~~ 253 (334)
+++...||+.+|+.+|++..++.+++.++++|+++++..+ .-+.|-|++||.-+.-.|...|.+.|..++++++..++
T Consensus 354 -lII~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~rg~~~V~~~dVe~a~~lF 432 (450)
T COG1224 354 -LIISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRRGSKRVEVEDVERAKELF 432 (450)
T ss_pred -EEEECCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHHCCHHHHHHHHHCCCEEEHHHHHHHHHHH
T ss_conf -6774477988999999997643540304888999997515034489999861688899987179746566799999987
No 59
>KOG0733 consensus
Probab=99.90 E-value=8.9e-24 Score=164.91 Aligned_cols=185 Identities=26% Similarity=0.311 Sum_probs=131.2
Q ss_pred HHHCCCCC----HHHHCCHHHHHHHHHHHHHHHHHCC--------CCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCC
Q ss_conf 87507898----7782397999999999999866146--------77670799737885577899999986189853125
Q gi|254780552|r 19 ISLLRPRT----LEEFTGQVEACSNLKVFIEAAKARA--------EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTS 86 (334)
Q Consensus 19 ~~~lRP~~----l~dviGQ~~~~~~l~~~i~a~~~~~--------~~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s 86 (334)
.+.+++.. |.|+-|.+.....|...+-. ..+. .+..-+||+||||||||+||+.||++++++|..++
T Consensus 177 ~~~~~~~~snv~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~is 255 (802)
T KOG0733 177 VEGLEFPESNVSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSIS 255 (802)
T ss_pred HCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHH-HCCCHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCEEEEC
T ss_conf 22467898886365416738999999999988-52811686628779975164489986478999997521288548514
Q ss_pred CCCCC-C-----HHHHHHHHHHHHC--CCHHHHHHHHHCCHHHHH-----------HHHHHHHCCCCCCCCCCCCCCCEE
Q ss_conf 76443-3-----4676666664101--637888757616989999-----------999986347510025678765200
Q gi|254780552|r 87 GPVIA-K-----AGDLAALLTNLED--RDVLFIDEIHRLSIIVEE-----------ILYPAMEDFQLDLMVGEGPSARSV 147 (334)
Q Consensus 87 ~~~~~-~-----~~dl~~~~~~~~~--~~vlfiDEihrl~~~~q~-----------~Ll~~mE~~~i~i~~~~~~~a~~~ 147 (334)
||.+- + -+-++.+|..+.. .+|+|||||+.+.+..+. .||..|++-.. .+.
T Consensus 256 ApeivSGvSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~----~~~------ 325 (802)
T KOG0733 256 APEIVSGVSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSN----EKT------ 325 (802)
T ss_pred CHHHHCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC----CCC------
T ss_conf 1465315575228999999998736697599851100136440457889999999999985100256----666------
Q ss_pred ECCCCCCEEEECCCCCCCCCHHHHH--CCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCC
Q ss_conf 0466740055204554335545442--012067326454799999877765412101111111233202210
Q gi|254780552|r 148 KINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRG 217 (334)
Q Consensus 148 ~~~~~~f~lI~ATt~~~~l~~~l~s--R~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~G 217 (334)
+-.++.+|||||+|..|.++||- ||..-+-+.-++...-.+|++.+|+.+.+.-+ =-...||+..-|
T Consensus 326 --~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~-~d~~qlA~lTPG 394 (802)
T KOG0733 326 --KGDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGD-FDFKQLAKLTPG 394 (802)
T ss_pred --CCCCEEEEECCCCCCCCCHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCC-CCHHHHHHCCCC
T ss_conf --899769982478976558777325655323530689668899999999862777877-689999751887
No 60
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.90 E-value=1.2e-22 Score=157.99 Aligned_cols=218 Identities=22% Similarity=0.274 Sum_probs=146.5
Q ss_pred CCCC-HHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHC-------CCCCCCCC--------
Q ss_conf 7898-7782397999999999999866146776707997378855778999999861-------89853125--------
Q gi|254780552|r 23 RPRT-LEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-------GVNFRSTS-------- 86 (334)
Q Consensus 23 RP~~-l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l-------~~~~~~~s-------- 86 (334)
||.. |..+|||+++|..|-.. +.. ..++|+|+.|||||||||+||.+|.-+ ||+|....
T Consensus 6 ~~~fPf~aIvGQe~~k~aLll~--av~---p~iGgVLi~G~~GtgKStlvRala~lLP~i~~v~~~~f~~~p~~p~~~~~ 80 (347)
T CHL00081 6 RPVFPFTAIVGQEEMKLALLLN--VID---PKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKNDPFNSDPRDPDLMSD 80 (347)
T ss_pred CCCCCHHHHCCHHHHHHHHHHH--HCC---CCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCH
T ss_conf 7889840653849999999998--257---88786998789987499999999985787422068876789898100242
Q ss_pred ------------------CCCCC-----------CHHHHHHH------------HHHHHCCCHHHHHHHHHCCHHHHHHH
Q ss_conf ------------------76443-----------34676666------------66410163788875761698999999
Q gi|254780552|r 87 ------------------GPVIA-----------KAGDLAAL------------LTNLEDRDVLFIDEIHRLSIIVEEIL 125 (334)
Q Consensus 87 ------------------~~~~~-----------~~~dl~~~------------~~~~~~~~vlfiDEihrl~~~~q~~L 125 (334)
.|.++ +.-|+... +..+ ++.|||+|||++++...|++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~p~v~lPlgaTEDrv~GslDie~al~~G~~~f~pGlLa~A-~rGiLyvDEINll~d~~v~~L 159 (347)
T CHL00081 81 EVRERIRNGEKIPTKKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKA-NRGILYVDEVNLLDDHLVDIL 159 (347)
T ss_pred HHHHHHCCCCCCCCEECCCCEEECCCCCCCCEECCCHHHHHHHHCCCCCCCCCHHHHC-CCCEEEEEHHHHHHHHHHHHH
T ss_conf 6665431466675211468625368888523011400099898458711565312220-388588614543237999999
Q ss_pred HHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCC-CCCCHHHHHCCCCEEECCCC-CHHHHHHHHHHHHH------
Q ss_conf 99863475100256787652000466740055204554-33554544201206732645-47999998777654------
Q gi|254780552|r 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV-GLLTNPLQDRFGIPIRLNFY-EIEDLKTIVQRGAK------ 197 (334)
Q Consensus 126 l~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~-~~l~~~l~sR~~~~~~~~~~-~~~el~~il~~~~~------ 197 (334)
|.+|++|.+.+ -.+|. +++. ..+|++||+.|-. +.|.+.++|||.++..+..+ +.++-.+|+++...
T Consensus 160 Lda~a~G~~~V-EReG~---S~~~-Pa~F~liaT~NPeEgeLrp~llDRF~l~v~v~~~~~~e~R~eiv~~r~~f~~~p~ 234 (347)
T CHL00081 160 LDSAASGWNTV-EREGI---SIRH-PARFVLIGSGNPEEGELRPQLLDRFGMHAEIRTVKDPELRVKIVEQRSNFDKNPE 234 (347)
T ss_pred HHHHHCCEEEE-CCCCE---EECC-CCCEEEEECCCCCCCCCCHHHHHHEEEEEECCCCCCHHHHHHHHHHHHHHHHCHH
T ss_conf 99985580898-04642---3305-7500688557865567488888263226745887898999999999997651969
Q ss_pred -----------------------HCCCHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf -----------------------121011111112332022----10156788777543334554158864277878765
Q gi|254780552|r 198 -----------------------LTGLAVTDEAACEIAMRS----RGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250 (334)
Q Consensus 198 -----------------------~~~i~~~~~al~~ia~~s----~Gd~R~AlnlLe~v~d~a~~~~~~~i~~~~~~~~l 250 (334)
..++.++++.+.+|+..+ -...|.-+.+++.++.+|...|...++.++++.+.
T Consensus 235 ~f~~~~~~~~~~l~~~I~~Ar~~L~~V~v~~~~~~~i~~~~~~~~v~g~RA~I~l~raARA~AAL~GR~~V~~eDv~~aa 314 (347)
T CHL00081 235 NFREKYSESQDALKTQIILARQLLPNVEIDYDLRVKISQICSELDVDGLRGDIVTNRAAKALAAFNGRDEVTPGDIEKVI 314 (347)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf 99999887899999999999864477355999999999999984899871899999999999998699836899999999
Q ss_pred H
Q ss_conf 4
Q gi|254780552|r 251 L 251 (334)
Q Consensus 251 ~ 251 (334)
.
T Consensus 315 ~ 315 (347)
T CHL00081 315 T 315 (347)
T ss_pred H
T ss_conf 9
No 61
>KOG2035 consensus
Probab=99.90 E-value=3.2e-22 Score=155.41 Aligned_cols=211 Identities=26% Similarity=0.325 Sum_probs=154.5
Q ss_pred HHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHC-CCC----------CCCCC
Q ss_conf 7875078987782397999999999999866146776707997378855778999999861-898----------53125
Q gi|254780552|r 18 DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-GVN----------FRSTS 86 (334)
Q Consensus 18 ~~~~lRP~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l-~~~----------~~~~s 86 (334)
+++..||++|+.+++.++....|+.+.. ...+||++||||.|.||-|.+.++-+++ |.. |..-|
T Consensus 3 Wvdkyrpksl~~l~~~~e~~~~Lksl~~-----~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS 77 (351)
T KOG2035 3 WVDKYRPKSLDELIYHEELANLLKSLSS-----TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPS 77 (351)
T ss_pred CHHHCCCCHHHHCCCHHHHHHHHHHHCC-----CCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCHHEEEEEEEEECCC
T ss_conf 3665075114303318888899987414-----57787078888898872111899999885787245056667886488
Q ss_pred CC-----------CCC-CHHHH--------HHHH----------HHH-HCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCC
Q ss_conf 76-----------443-34676--------6666----------641-01637888757616989999999986347510
Q gi|254780552|r 87 GP-----------VIA-KAGDL--------AALL----------TNL-EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 (334)
Q Consensus 87 ~~-----------~~~-~~~dl--------~~~~----------~~~-~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~ 135 (334)
.. -++ .|+|. ..++ ++. +.-.|+.|-|++.|++.+|.+|...||.|.-
T Consensus 78 ~kklEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~- 156 (351)
T KOG2035 78 KKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRDAQHALRRTMEKYSS- 156 (351)
T ss_pred CCEEEEEEECCCCEEEECHHHCCCCCHHHHHHHHHHHHHHCCHHHCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHC-
T ss_conf 8637999942565177473433751179999999998741413332666548999803576508899999999999860-
Q ss_pred CCCCCCCCCCEEECCCCCCEEEECCCCCCCCCHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC
Q ss_conf 02567876520004667400552045543355454420120673264547999998777654121011111112332022
Q gi|254780552|r 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRS 215 (334)
Q Consensus 136 i~~~~~~~a~~~~~~~~~f~lI~ATt~~~~l~~~l~sR~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s 215 (334)
+. -+|..++...+|.+|++||| +..|..-++.+|+..++.++++++++++..+.+..||+.|
T Consensus 157 ----------~~-------RlIl~cns~SriIepIrSRC-l~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~kS 218 (351)
T KOG2035 157 ----------NC-------RLILVCNSTSRIIEPIRSRC-LFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEKS 218 (351)
T ss_pred ----------CC-------EEEEEECCCCCCHHHHHHHE-EEEECCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf ----------71-------69999267430226776220-5876789987899999999998733448499999999970
Q ss_pred CCCHHHHHHHHHHHHHH--HHHHCCCCCCHHHHHHHHHH
Q ss_conf 10156788777543334--55415886427787876542
Q gi|254780552|r 216 RGTPRIAGRLLRRVRDF--AEVAHAKTITREIADAALLR 252 (334)
Q Consensus 216 ~Gd~R~AlnlLe~v~d~--a~~~~~~~i~~~~~~~~l~~ 252 (334)
+|++|.|+=+||.++-- .-......|-.-+|+..+..
T Consensus 219 ~~nLRrAllmlE~~~~~n~~~~a~~~~i~~~dWe~~i~e 257 (351)
T KOG2035 219 NRNLRRALLMLEAVRVNNEPFTANSQVIPKPDWEIYIQE 257 (351)
T ss_pred CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 643999999999998546543255787799449999999
No 62
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.90 E-value=1.1e-21 Score=152.07 Aligned_cols=213 Identities=24% Similarity=0.314 Sum_probs=149.0
Q ss_pred HHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHC-----CCCCCCCCCCCCCCHHH-------
Q ss_conf 782397999999999999866146776707997378855778999999861-----89853125764433467-------
Q gi|254780552|r 28 EEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-----GVNFRSTSGPVIAKAGD------- 95 (334)
Q Consensus 28 ~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l-----~~~~~~~s~~~~~~~~d------- 95 (334)
+.++|-+.-++.+..++..... +...++++.+||||||||+.++-+.+++ +..+..+|+.....+..
T Consensus 30 ~~l~~Re~Ei~~l~~~l~~~l~-g~~~~n~~I~G~pGTGKT~~vk~v~~~l~~~~~~~~~vyINc~~~~t~~~i~~~i~~ 108 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPALR-GSRPSNVLILGPPGTGKTTTVKKVFEELEEAALKVVYVYINCQIDRTRYAILSEIAR 108 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHHC-CCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 9898859999999999999975-999984799889999899999999999997468965999969668989999999999
Q ss_pred ----------------HHH-HHHHHH---CCCHHHHHHHHHCC-HHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCC
Q ss_conf ----------------666-666410---16378887576169-899999999863475100256787652000466740
Q gi|254780552|r 96 ----------------LAA-LLTNLE---DRDVLFIDEIHRLS-IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRF 154 (334)
Q Consensus 96 ----------------l~~-~~~~~~---~~~vlfiDEihrl~-~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f 154 (334)
+.. +...+. ...|+.+|||+.|- +..++.||....-.. .-+. .++
T Consensus 109 ~L~~~~~p~~G~s~~~~~~~l~~~l~~~~~~~ivvLDEiD~L~~~~~~~vLY~L~r~~~------~~~~--------~~~ 174 (394)
T PRK00411 109 SLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLVEKEGNDVLYSLLRAHE------EYPG--------ARI 174 (394)
T ss_pred HHCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCHHHHHHHHCCC------CCCC--------CCE
T ss_conf 95699898778789999999999861669758999965540203665089999985402------2688--------738
Q ss_pred EEEECCCCCC---CCCHHHHHCCC-CEEECCCCCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHCCC---CCCHHHHHHH
Q ss_conf 0552045543---35545442012-067326454799999877765412--1011111112332022---1015678877
Q gi|254780552|r 155 TLIAATTRVG---LLTNPLQDRFG-IPIRLNFYEIEDLKTIVQRGAKLT--GLAVTDEAACEIAMRS---RGTPRIAGRL 225 (334)
Q Consensus 155 ~lI~ATt~~~---~l~~~l~sR~~-~~~~~~~~~~~el~~il~~~~~~~--~i~~~~~al~~ia~~s---~Gd~R~Alnl 225 (334)
.+||-+|... .+.+.++|||. -.+.|.||+.++|..|+...++.- .=.++++++..+|..+ .||+|.|+.+
T Consensus 175 ~vI~IsN~~~~~~~Ldprv~S~l~~~~i~F~PY~~~qL~~IL~~R~~~af~~gv~~~~~i~~~A~~~a~~~GDaR~Aldl 254 (394)
T PRK00411 175 GVIGISSDLTFLYILDPRVKSVFGPEEIVFPPYTADEIFDILKDRVEEGFYPGVVSDEVLELIADLTGREHGDARVAIDL 254 (394)
T ss_pred EEEEEECCCCHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 99999768717766407775027862898589998999999999998414556789789999999985504758999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHC
Q ss_conf 754333455415886427787876542100
Q gi|254780552|r 226 LRRVRDFAEVAHAKTITREIADAALLRLAI 255 (334)
Q Consensus 226 Le~v~d~a~~~~~~~i~~~~~~~~l~~~~i 255 (334)
|.++-+.|..++...|+.++|+.+......
T Consensus 255 lr~A~e~Ae~~g~~~Vt~~hV~~A~~~~~~ 284 (394)
T PRK00411 255 LRRAGEIAEREGSRKVTEEDVRKAYEKSEP 284 (394)
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHC
T ss_conf 999999999718996589999999998600
No 63
>KOG0733 consensus
Probab=99.89 E-value=9.4e-23 Score=158.66 Aligned_cols=175 Identities=29% Similarity=0.389 Sum_probs=131.4
Q ss_pred CHHHHCCHHHHHHHHHHHHHHHHHCCC--------CCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC--HHH
Q ss_conf 877823979999999999998661467--------7670799737885577899999986189853125764433--467
Q gi|254780552|r 26 TLEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--AGD 95 (334)
Q Consensus 26 ~l~dviGQ~~~~~~l~~~i~a~~~~~~--------~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~~~~~~--~~d 95 (334)
+|+||-|++++...|..+|.+-.++.+ .+.-+|+|||||||||.+|+++|+|.+.+|+.+-||.+-+ +++
T Consensus 509 tW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkYVGE 588 (802)
T KOG0733 509 TWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKYVGE 588 (802)
T ss_pred CHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCEEEECCHHHHHHHHHH
T ss_conf 76641249999999999986002388899982888987238757998618899999850304754762388999877423
Q ss_pred ----HHHHHHHH--HCCCHHHHHHHHHCCHH-----------HHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEE
Q ss_conf ----66666641--01637888757616989-----------99999998634751002567876520004667400552
Q gi|254780552|r 96 ----LAALLTNL--EDRDVLFIDEIHRLSII-----------VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIA 158 (334)
Q Consensus 96 ----l~~~~~~~--~~~~vlfiDEihrl~~~-----------~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ 158 (334)
++..|+.+ ...+|+|.||++.|.+. .-+.||.-|+. -+.+ ..+++||
T Consensus 589 SErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDG----------l~~R------~gV~via 652 (802)
T KOG0733 589 SERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDG----------LEER------RGVYVIA 652 (802)
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCHHHHHHHHHHHHHHCC----------CCCC------CCEEEEE
T ss_conf 78999999998623898389851112027655777750589999999987316----------2111------4259995
Q ss_pred CCCCCCCCCHHHHH--CCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHH-HHHHHCCCC
Q ss_conf 04554335545442--01206732645479999987776541210111111-123320221
Q gi|254780552|r 159 ATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEA-ACEIAMRSR 216 (334)
Q Consensus 159 ATt~~~~l~~~l~s--R~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~a-l~~ia~~s~ 216 (334)
|||+|..|.++++- ||.-.+...+++.+|-..|++...+..+..+++++ +++||+.-+
T Consensus 653 ATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~ 713 (802)
T KOG0733 653 ATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTK 713 (802)
T ss_pred ECCCCCCCCHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCC
T ss_conf 0689765556551877557424506998788999999985357998875458999851232
No 64
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=2.8e-22 Score=155.77 Aligned_cols=224 Identities=24% Similarity=0.329 Sum_probs=148.7
Q ss_pred CCCCHHHHHC----CCC-CHHHHCCHHHHHHHHHHHHHHHHHCC--------CCCCCEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 4120578750----789-87782397999999999999866146--------7767079973788557789999998618
Q gi|254780552|r 13 SQEDADISLL----RPR-TLEEFTGQVEACSNLKVFIEAAKARA--------EALDHVLFVGPPGLGKTTLAQVVARELG 79 (334)
Q Consensus 13 ~~~~~~~~~l----RP~-~l~dviGQ~~~~~~l~~~i~a~~~~~--------~~~~h~Lf~GPpG~GKTtlA~iiA~~l~ 79 (334)
.+.|+-+..| +|. +++||-|.+..++.++-.++--..+. +++.-+|||||||||||.+|+++|+..+
T Consensus 131 ~~~Dp~V~~M~v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~ 210 (406)
T COG1222 131 PEVDPRVSVMEVEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTD 210 (406)
T ss_pred CCCCCHHHEEEECCCCCCCHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 75576202001125898786533588999999999840336688899974999997127668999758899999872058
Q ss_pred CCCCCCCCCCC------CCHHHHHHHHHHHH--CCCHHHHHHHHHCC-----------HHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 98531257644------33467666666410--16378887576169-----------8999999998634751002567
Q gi|254780552|r 80 VNFRSTSGPVI------AKAGDLAALLTNLE--DRDVLFIDEIHRLS-----------IIVEEILYPAMEDFQLDLMVGE 140 (334)
Q Consensus 80 ~~~~~~s~~~~------~~~~dl~~~~~~~~--~~~vlfiDEihrl~-----------~~~q~~Ll~~mE~~~i~i~~~~ 140 (334)
+.|+.+.|+.+ +++.=++.+|..++ ..+|+|||||+.+. +.+|-+++.-+.. + .
T Consensus 211 AtFIrvvgSElVqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~q--l-----D 283 (406)
T COG1222 211 ATFIRVVGSELVQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQ--L-----D 283 (406)
T ss_pred CEEEEECCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEECHHHHHCCCCCCCCCCHHHHHHHHHHHHHH--C-----C
T ss_conf 66999421999999834116999999998741498499983112231111368888509999999999986--0-----5
Q ss_pred CCCCCEEECCCCCCEEEECCCCCCCCCHHHHH--CCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHH-HHHHHCCCCC
Q ss_conf 87652000466740055204554335545442--01206732645479999987776541210111111-1233202210
Q gi|254780552|r 141 GPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEA-ACEIAMRSRG 217 (334)
Q Consensus 141 ~~~a~~~~~~~~~f~lI~ATt~~~~l~~~l~s--R~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~a-l~~ia~~s~G 217 (334)
|+..+ .....|+|||++..|.|||+- ||...+.|..++.+.-.+|++-.+.+. ++++++ +..||+...|
T Consensus 284 GFD~~------~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM--~l~~dvd~e~la~~~~g 355 (406)
T COG1222 284 GFDPR------GNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKM--NLADDVDLELLARLTEG 355 (406)
T ss_pred CCCCC------CCEEEEEECCCCCCCCHHHCCCCCCCCEEECCCCCHHHHHHHHHHHHHHC--CCCCCCCHHHHHHHCCC
T ss_conf 88978------87689985588555576650887545301168989789999999876214--67667699999875389
Q ss_pred CHHHH-HHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 15678-87775433345541588642778787654
Q gi|254780552|r 218 TPRIA-GRLLRRVRDFAEVAHAKTITREIADAALL 251 (334)
Q Consensus 218 d~R~A-lnlLe~v~d~a~~~~~~~i~~~~~~~~l~ 251 (334)
---.- -+++.-+-=||.-+....++.++..++..
T Consensus 356 ~sGAdlkaictEAGm~AiR~~R~~Vt~~DF~~Av~ 390 (406)
T COG1222 356 FSGADLKAICTEAGMFAIRERRDEVTMEDFLKAVE 390 (406)
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCEECHHHHHHHHH
T ss_conf 95677999999875999986047333999999999
No 65
>KOG0734 consensus
Probab=99.89 E-value=3.5e-22 Score=155.19 Aligned_cols=215 Identities=26% Similarity=0.314 Sum_probs=155.1
Q ss_pred HHCCCCCHHHHCCHHHHHHHHHHHHHHHH-------HCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 75078987782397999999999999866-------14677670799737885577899999986189853125764433
Q gi|254780552|r 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAK-------ARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK 92 (334)
Q Consensus 20 ~~lRP~~l~dviGQ~~~~~~l~~~i~a~~-------~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~~~~~~ 92 (334)
+.+--.+|+||-|-++++..|+..++--+ ..|+-+.-+||.||||||||.|||++|.|.+++|...+|+.++.
T Consensus 296 ~~~~nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdE 375 (752)
T KOG0734 296 EQMKNVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDE 375 (752)
T ss_pred HHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCCEEECCCCCHHH
T ss_conf 66416550021472789999999999860908764314758885387689997556999986055689747416620445
Q ss_pred ------HHHHHHHHHHHH--CCCHHHHHHHHHCC-----HHH------HHHHHHHHHCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf ------467666666410--16378887576169-----899------99999986347510025678765200046674
Q gi|254780552|r 93 ------AGDLAALLTNLE--DRDVLFIDEIHRLS-----IIV------EEILYPAMEDFQLDLMVGEGPSARSVKINLSR 153 (334)
Q Consensus 93 ------~~dl~~~~~~~~--~~~vlfiDEihrl~-----~~~------q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~ 153 (334)
++-++.+|..++ -.||+|||||+... +.+ -+-||.-|+.|+- + ..
T Consensus 376 m~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~q--------N--------eG 439 (752)
T KOG0734 376 MFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQ--------N--------EG 439 (752)
T ss_pred HHHCCCHHHHHHHHHHHHHCCCEEEEEECHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCC--------C--------CC
T ss_conf 4220148999999999873498599972002205667862778999899999998428676--------8--------86
Q ss_pred CEEEECCCCCCCCCHHHH--HCCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHH-HHHHHCCCCC-CHHHHHHHHHHH
Q ss_conf 005520455433554544--201206732645479999987776541210111111-1233202210-156788777543
Q gi|254780552|r 154 FTLIAATTRVGLLTNPLQ--DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEA-ACEIAMRSRG-TPRIAGRLLRRV 229 (334)
Q Consensus 154 f~lI~ATt~~~~l~~~l~--sR~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~a-l~~ia~~s~G-d~R~AlnlLe~v 229 (334)
..+|||||.|..|.++|. -||..+.....++..--.+|++.... ++..++++ +..||+-.-| +.-+.-|+..++
T Consensus 440 iIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~--ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqA 517 (752)
T KOG0734 440 IIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLS--KIPLDEDVDPKIIARGTPGFSGADLANLVNQA 517 (752)
T ss_pred EEEEECCCCHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHH--CCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 6999516874555687348875533674689773328999999983--48765677876722688987657899888899
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 33455415886427787876542
Q gi|254780552|r 230 RDFAEVAHAKTITREIADAALLR 252 (334)
Q Consensus 230 ~d~a~~~~~~~i~~~~~~~~l~~ 252 (334)
.-+|...+...++.++.+.+-+.
T Consensus 518 AlkAa~dga~~VtM~~LE~akDr 540 (752)
T KOG0734 518 ALKAAVDGAEMVTMKHLEFAKDR 540 (752)
T ss_pred HHHHHHCCCCCCCHHHHHHHHHH
T ss_conf 99998637401108877654433
No 66
>pfam06068 TIP49 TIP49 C-terminus. This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the pfam00004 domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear
Probab=99.89 E-value=3.6e-22 Score=155.11 Aligned_cols=103 Identities=33% Similarity=0.376 Sum_probs=87.2
Q ss_pred CHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCC------------CCCCCHHHHHCC
Q ss_conf 37888757616989999999986347510025678765200046674005520455------------433554544201
Q gi|254780552|r 107 DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTR------------VGLLTNPLQDRF 174 (334)
Q Consensus 107 ~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~------------~~~l~~~l~sR~ 174 (334)
.||||||+|+|.-..+.+|-.+||+- +.| .+|.|||| |+=+|.-|+|||
T Consensus 277 GVLFIDEvHMLDiEcFsfLnralEs~------------------laP-ivI~ATNRG~~~IRGTd~~sPHGiP~DlLDRl 337 (395)
T pfam06068 277 GVLFIDEVHMLDIECFSFLNRALESE------------------LAP-IVILATNRGICTIRGTDIISPHGIPLDLLDRL 337 (395)
T ss_pred CCEEEECCHHCCHHHHHHHHHHHCCC------------------CCC-EEEEEECCCCEEECCCCCCCCCCCCHHHHHHE
T ss_conf 74688500000058998887765056------------------787-69998446520352567758889987777302
Q ss_pred CCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC-CCCHHHHHHHHHHH
Q ss_conf 20673264547999998777654121011111112332022-10156788777543
Q gi|254780552|r 175 GIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRS-RGTPRIAGRLLRRV 229 (334)
Q Consensus 175 ~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s-~Gd~R~AlnlLe~v 229 (334)
++++..+|+.+|+.+|++-.|+.++++++++|+..++..+ .-+.|-|++||.-+
T Consensus 338 -lII~T~py~~~ei~~Ii~iRa~~E~v~l~~~al~~L~~ig~~~SLRYaiqLltpa 392 (395)
T pfam06068 338 -LIITTEPYTREEIKQILEIRAQEEGVEISEEALDLLAKIGEETSLRYAIQLLTPA 392 (395)
T ss_pred -EEEECCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHCHH
T ss_conf -5885688998999999998777607877989999999865320299999872587
No 67
>pfam01078 Mg_chelatase Magnesium chelatase, subunit ChlI. Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. Due to this, it is thought that Mg-chelatase has an important role in channelling inter- mediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weight between 38-42 kDa.
Probab=99.88 E-value=6.3e-23 Score=159.70 Aligned_cols=150 Identities=31% Similarity=0.463 Sum_probs=103.4
Q ss_pred CHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCC----------CCCCCCCCC-----CC
Q ss_conf 877823979999999999998661467767079973788557789999998618----------985312576-----44
Q gi|254780552|r 26 TLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG----------VNFRSTSGP-----VI 90 (334)
Q Consensus 26 ~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~----------~~~~~~s~~-----~~ 90 (334)
.|.||+||+.+|..+.++ ++- -+|+|++||||+|||++|+.++.-|- ..+.++++. .+
T Consensus 1 Df~di~GQ~~akrAl~iA--aaG-----~H~lLl~GpPG~GKTmlA~rl~~iLP~l~~~e~le~~~i~S~~g~~~~~~l~ 73 (207)
T pfam01078 1 DLADVKGQEQAKRALEIA--AAG-----GHNLLMIGPPGSGKTMLAKRLPGILPPLTEQEALEVTAIHSVAGLGGDGGLI 73 (207)
T ss_pred CHHHHCCCHHHHHHHHHH--HCC-----CCCEEEECCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 976863859999999998--547-----8758978899802999997630148998789988777642303687777744
Q ss_pred C-----CH------HHHH--------HHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCC
Q ss_conf 3-----34------6766--------666641016378887576169899999999863475100256787652000466
Q gi|254780552|r 91 A-----KA------GDLA--------ALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINL 151 (334)
Q Consensus 91 ~-----~~------~dl~--------~~~~~~~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~ 151 (334)
. .+ ..+. +.+ .+.++.|||+||+.+|++..+|+|+..||+++|.|.-. ..+++.+
T Consensus 74 ~~rPfr~PHhs~s~~aliGGg~~~~PGeI-slAH~GVLFLDE~~Ef~~~vle~LrqpLE~~~v~IsRa----~~~~~~P- 147 (207)
T pfam01078 74 RRRPFRAPHHSASAAALVGGGSIPRPGEI-SLAHNGVLFLDELPEFSRRVLESLRQPLEDGEITISRA----RAKVTFP- 147 (207)
T ss_pred CCCCCCCCCCCCCHHHCCCCCCCCCCCCE-EECCCCEEEECCHHHCCHHHHHHHHHHHCCCCEEEEEC----CCEEEEC-
T ss_conf 57986578876436332268888999706-66368788847646539889999987660494899956----7589860-
Q ss_pred CCCEEEECCCCC-----------------------CCCCHHHHHCCCCEEECCCCCHHHH
Q ss_conf 740055204554-----------------------3355454420120673264547999
Q gi|254780552|r 152 SRFTLIAATTRV-----------------------GLLTNPLQDRFGIPIRLNFYEIEDL 188 (334)
Q Consensus 152 ~~f~lI~ATt~~-----------------------~~l~~~l~sR~~~~~~~~~~~~~el 188 (334)
.+|.||+|+|-- .+|+.||+|||.++..+.+.+.+||
T Consensus 148 A~f~LvaA~NPCpCG~~~~~~~~C~C~~~~~~~Y~~rlSgPllDRiDl~v~~~~~~~~~l 207 (207)
T pfam01078 148 ARFQLVAAMNPCPCGYLGDPDKRCRCTPRQIRRYLSRLSGPLLDRIDLQVEVPRLSAEEL 207 (207)
T ss_pred CCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHCCEEEEEECCCCCHHHC
T ss_conf 434888850577778788999975788999999987645220206878997789995769
No 68
>KOG1969 consensus
Probab=99.88 E-value=1.1e-21 Score=152.01 Aligned_cols=210 Identities=17% Similarity=0.204 Sum_probs=149.2
Q ss_pred HHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHH----H----C--------------------CCCCC-CEEEECCCCCCH
Q ss_conf 57875078987782397999999999999866----1----4--------------------67767-079973788557
Q gi|254780552|r 17 ADISLLRPRTLEEFTGQVEACSNLKVFIEAAK----A----R--------------------AEALD-HVLFVGPPGLGK 67 (334)
Q Consensus 17 ~~~~~lRP~~l~dviGQ~~~~~~l~~~i~a~~----~----~--------------------~~~~~-h~Lf~GPpG~GK 67 (334)
-+++..||+.|.|.+|.+.+-..+-.|++++- . + +.+.. -+||+||||.||
T Consensus 260 LWVdky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGK 339 (877)
T KOG1969 260 LWVDKYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGK 339 (877)
T ss_pred EEECCCCHHHHHHHHCCHHHHHHHHHHHHHHCHHHHCCHHHHHCCCCCCCHHHHHHCCCCCCCCCCCCEEEEECCCCCCH
T ss_conf 01211371678887452068799999998615786401475543354664345563246866798400687536887872
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHH-------H---HCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCC
Q ss_conf 78999999861898531257644334676666664-------1---0163788875761698999999998634751002
Q gi|254780552|r 68 TTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTN-------L---EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM 137 (334)
Q Consensus 68 TtlA~iiA~~l~~~~~~~s~~~~~~~~dl~~~~~~-------~---~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~ 137 (334)
||+|++||+..|+...++||+.-..+.++...+.+ . .+..-|+||||+.-.+..-++++..++.-..-..
T Consensus 340 TTLAHViAkqaGYsVvEINASDeRt~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~~~~Vdvilslv~a~~k~~~ 419 (877)
T KOG1969 340 TTLAHVIAKQAGYSVVEINASDERTAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAPRAAVDVILSLVKATNKQAT 419 (877)
T ss_pred HHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCHHH
T ss_conf 47999999862854887325554347889999999886411225688863599842468728999999999974161421
Q ss_pred CCCCCCCC-----EEECCCCCCEEEECCCCCCCCCHHHHH-C-CCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 56787652-----000466740055204554335545442-0-1206732645479999987776541210111111123
Q gi|254780552|r 138 VGEGPSAR-----SVKINLSRFTLIAATTRVGLLTNPLQD-R-FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACE 210 (334)
Q Consensus 138 ~~~~~~a~-----~~~~~~~~f~lI~ATt~~~~l~~~l~s-R-~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ 210 (334)
-.+++..+ ......-| .|+-+|+.+ .|+||. | |..+..|.+.+..-|.+-++-+|..+++.++..+|..
T Consensus 420 Gkq~~~~~~rkkkr~~~L~RP--IICICNdLY--aPaLR~Lr~~A~ii~f~~p~~s~Lv~RL~~IC~rE~mr~d~~aL~~ 495 (877)
T KOG1969 420 GKQAKKDKKRKKKRSKLLTRP--IICICNDLY--APALRPLRPFAEIIAFVPPSQSRLVERLNEICHRENMRADSKALNA 495 (877)
T ss_pred CCCCCCHHHHHHHCCCCCCCC--EEEEECCCC--CHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf 686632034555304654587--789864755--5333310210489995699766899999999764157788789999
Q ss_pred HHCCCCCCHHHHHHHHHHHH
Q ss_conf 32022101567887775433
Q gi|254780552|r 211 IAMRSRGTPRIAGRLLRRVR 230 (334)
Q Consensus 211 ia~~s~Gd~R~AlnlLe~v~ 230 (334)
|+....+|+|..||.||.+.
T Consensus 496 L~el~~~DIRsCINtLQfLa 515 (877)
T KOG1969 496 LCELTQNDIRSCINTLQFLA 515 (877)
T ss_pred HHHHHCCHHHHHHHHHHHHH
T ss_conf 99986130988888999999
No 69
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=1.3e-22 Score=157.73 Aligned_cols=215 Identities=27% Similarity=0.367 Sum_probs=124.5
Q ss_pred CCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCC----CC------CCCCCCCCCCC--
Q ss_conf 9877823979999999999998661467767079973788557789999998618----98------53125764433--
Q gi|254780552|r 25 RTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG----VN------FRSTSGPVIAK-- 92 (334)
Q Consensus 25 ~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~----~~------~~~~s~~~~~~-- 92 (334)
..|.||+||++.|..+.++ ++- -+|+||+||||||||.+|.-+..-|- -+ ++++.+...++
T Consensus 176 ~D~~DV~GQ~~AKrAleiA--AAG-----gHnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~~~~~~~~~ 248 (490)
T COG0606 176 PDFKDVKGQEQAKRALEIA--AAG-----GHNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLAGDLHEGCP 248 (490)
T ss_pred CCHHHHCCCHHHHHHHHHH--HHC-----CCCEEEECCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 6666643849999999999--843-----886787569988656764231025999870888999888763543246786
Q ss_pred ---------H---HHHHHHH----------HHHHCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECC
Q ss_conf ---------4---6766666----------64101637888757616989999999986347510025678765200046
Q gi|254780552|r 93 ---------A---GDLAALL----------TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN 150 (334)
Q Consensus 93 ---------~---~dl~~~~----------~~~~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~ 150 (334)
+ .-..++. -++.++.|||+||.-+|.+..-|+|...||++++.|-.... .++.
T Consensus 249 ~~~~rPFr~PHHsaS~~aLvGGG~~p~PGeIsLAH~GVLFLDElpef~~~iLe~LR~PLE~g~i~IsRa~~----~v~y- 323 (490)
T COG0606 249 LKIHRPFRAPHHSASLAALVGGGGVPRPGEISLAHNGVLFLDELPEFKRSILEALREPLENGKIIISRAGS----KVTY- 323 (490)
T ss_pred CCEECCCCCCCCCCHHHHHHCCCCCCCCCCEEEECCCEEEEECCCHHHHHHHHHHHCCCCCCCEEEEECCC----EEEE-
T ss_conf 41107876887402288973789988987354303877886144210599999973741258179997587----1687-
Q ss_pred CCCCEEEECCCCC-----------------------CCCCHHHHHCCCCEEECCCCCHHHHHH----------HHHHH--
Q ss_conf 6740055204554-----------------------335545442012067326454799999----------87776--
Q gi|254780552|r 151 LSRFTLIAATTRV-----------------------GLLTNPLQDRFGIPIRLNFYEIEDLKT----------IVQRG-- 195 (334)
Q Consensus 151 ~~~f~lI~ATt~~-----------------------~~l~~~l~sR~~~~~~~~~~~~~el~~----------il~~~-- 195 (334)
..+|+||+|||-. .+|+.|++||+.+.......+..|+.. +-+|+
T Consensus 324 pa~Fqlv~AmNpcpcG~~~~~~~~C~c~~~~~~~Y~~klSgp~lDRiDl~vev~~~~~~e~~~~~~~~ess~~v~~rVa~ 403 (490)
T COG0606 324 PARFQLVAAMNPCPCGNLGAPLRRCPCSPRQIKRYLNKLSGPFLDRIDLMVEVPRLSAGELIRQVPTGESSAGVRERVAK 403 (490)
T ss_pred EEEEEEHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHCCCCCCCCCHHHHHHHHH
T ss_conf 21267752239997647888777757887887788987437877552411004678978761478989875889999999
Q ss_pred --------HHH--CCCHHHHHHHHHHHCCCC--------------CCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf --------541--210111111123320221--------------01567887775433345541588642778787654
Q gi|254780552|r 196 --------AKL--TGLAVTDEAACEIAMRSR--------------GTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251 (334)
Q Consensus 196 --------~~~--~~i~~~~~al~~ia~~s~--------------Gd~R~AlnlLe~v~d~a~~~~~~~i~~~~~~~~l~ 251 (334)
... .|..+...+++..+...+ =+.|..-++|+..+.+|.+++...|...++.++++
T Consensus 404 AR~~Q~~R~~~~~~Na~l~~~~l~k~~~L~~~~~~~L~~al~~~~lS~R~~~rILKvarTiADL~g~~~i~~~hl~eAi~ 483 (490)
T COG0606 404 AREAQIARAGRIGINAELSEEALRKFCALQREDADLLKAALERLGLSARAYHRILKVARTIADLEGSEQIERSHLAEAIS 483 (490)
T ss_pred HHHHHHHHHHCCCCCHHCCHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf 99999998535685421289999976265776799999999966205998998998876565124741344999999974
No 70
>KOG0731 consensus
Probab=99.87 E-value=2.4e-21 Score=150.06 Aligned_cols=212 Identities=25% Similarity=0.329 Sum_probs=148.6
Q ss_pred CCCHHHHCCHHHHHHHHHHHHHHH------HHCC-CCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC-----
Q ss_conf 898778239799999999999986------6146-7767079973788557789999998618985312576443-----
Q gi|254780552|r 24 PRTLEEFTGQVEACSNLKVFIEAA------KARA-EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA----- 91 (334)
Q Consensus 24 P~~l~dviGQ~~~~~~l~~~i~a~------~~~~-~~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~~~~~----- 91 (334)
+-+|+||.|.++++..+.-++.-- ...| +.+.-+||+||||||||.||+++|.|-|++|..+||+.+.
T Consensus 307 ~V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~~g 386 (774)
T KOG0731 307 GVKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFVG 386 (774)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCCEEEECHHHHHHHHCC
T ss_conf 87601026708999999999998439899987477676751787899986789999885305896464133788887603
Q ss_pred -CHHHHHHHHHHHHC--CCHHHHHHHHHCCHHHH---------------HHHHHHHHCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf -34676666664101--63788875761698999---------------9999986347510025678765200046674
Q gi|254780552|r 92 -KAGDLAALLTNLED--RDVLFIDEIHRLSIIVE---------------EILYPAMEDFQLDLMVGEGPSARSVKINLSR 153 (334)
Q Consensus 92 -~~~dl~~~~~~~~~--~~vlfiDEihrl~~~~q---------------~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~ 153 (334)
.++-++.++..++. .+|+|||||+.+.+..+ +.||.-|+.|.- . ..
T Consensus 387 ~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~--------~--------~~ 450 (774)
T KOG0731 387 VGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFET--------S--------KG 450 (774)
T ss_pred CCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC--------C--------CC
T ss_conf 4348889999874326980797145420031255666678880788899988787527767--------7--------84
Q ss_pred CEEEECCCCCCCCCHHHHH--CCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCH-HHHHHHHHHHH
Q ss_conf 0055204554335545442--01206732645479999987776541210111111123320221015-67887775433
Q gi|254780552|r 154 FTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTP-RIAGRLLRRVR 230 (334)
Q Consensus 154 f~lI~ATt~~~~l~~~l~s--R~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~Gd~-R~AlnlLe~v~ 230 (334)
+.+++||+++.-+.++|+- ||.-+++.+.++...-.+|++..+...+...++.-+..||..--|-. =+.-|++..+-
T Consensus 451 vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa 530 (774)
T KOG0731 451 VIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAA 530 (774)
T ss_pred EEEEECCCCCCCCCHHHCCCCCCCCCEECCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf 79981168866428876498755552324698514168999998621577631567999986089996789986424999
Q ss_pred HHHHHHCCCCCCHHHHHHHHH
Q ss_conf 345541588642778787654
Q gi|254780552|r 231 DFAEVAHAKTITREIADAALL 251 (334)
Q Consensus 231 d~a~~~~~~~i~~~~~~~~l~ 251 (334)
-.|.-++...|+..+.+.++.
T Consensus 531 ~~a~r~~~~~i~~~~~~~a~~ 551 (774)
T KOG0731 531 LLAARKGLREIGTKDLEYAIE 551 (774)
T ss_pred HHHHHHCCCCCCHHHHHHHHH
T ss_conf 999873367301564999999
No 71
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit ClpA; InterPro: IPR013461 Proteins in this entry are related to ClpA () from Escherichia coli. ClpA is an ATP-dependent chaperone and part of the ClpAP protease that participates in regulatory protein degradation and the dissolution and degradation of protein aggregates . ClpA recognises sequences in specific proteins, which it then unfolds in an ATP-dependent manner and transports into the degradation chamber of the associated ClpP protein , . A small adaptor-like protein, ClpS, modulates the activity of ClpA and is an important regulatory factor for this protein . It protects ClpA from autodegradation and appears to redirect its activity away from soluble proteins and toward aggregated proteins..
Probab=99.87 E-value=1.3e-21 Score=151.63 Aligned_cols=194 Identities=27% Similarity=0.327 Sum_probs=134.5
Q ss_pred HHHHCCHHHHHHHHHHHHHHHH----HCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC---HHHH---
Q ss_conf 7782397999999999999866----14677670799737885577899999986189853125764433---4676---
Q gi|254780552|r 27 LEEFTGQVEACSNLKVFIEAAK----ARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK---AGDL--- 96 (334)
Q Consensus 27 l~dviGQ~~~~~~l~~~i~a~~----~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~~~~~~---~~dl--- 96 (334)
-.-|.|||.++..+-.+|+.++ .-++|..++||+||.|||||-+||-+|++||++|....-+.... |+-+
T Consensus 496 ~~kIfGQD~AI~~lv~aiK~SrAGl~~~nkP~GSFLF~GPTGVGKTElak~LA~~LGv~l~RFDMSEYmEKHTVsRLIGs 575 (774)
T TIGR02639 496 KAKIFGQDEAIEQLVSAIKRSRAGLGEPNKPVGSFLFVGPTGVGKTELAKQLAEELGVHLLRFDMSEYMEKHTVSRLIGS 575 (774)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCHHCCCCCHHHHHHHHHHHHHCC
T ss_conf 01315158999999999999874247788816888864798962578899999970820010465044689999874168
Q ss_pred ---------HHHHHHH---HCCCHHHHHHHHHCCHHHHHHHHHHHHC------------CCCC--CCCCCCCCCCEEECC
Q ss_conf ---------6666641---0163788875761698999999998634------------7510--025678765200046
Q gi|254780552|r 97 ---------AALLTNL---EDRDVLFIDEIHRLSIIVEEILYPAMED------------FQLD--LMVGEGPSARSVKIN 150 (334)
Q Consensus 97 ---------~~~~~~~---~~~~vlfiDEihrl~~~~q~~Ll~~mE~------------~~i~--i~~~~~~~a~~~~~~ 150 (334)
-+.+|.+ ++++||.+|||-.-.++..++||++|+. |+=+ |||. |..|+-..-
T Consensus 576 PPGYVGfEqGGLLT~AvrK~P~cVLLLDEIEKAHpDI~NILLQVMD~AtLTDN~GrKaDFRNVILIMTS-NaGa~E~~~- 653 (774)
T TIGR02639 576 PPGYVGFEQGGLLTDAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDYATLTDNNGRKADFRNVILIMTS-NAGAREMSK- 653 (774)
T ss_pred CCCCCCCCCCCCCHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCEEEECCEEEEECC-CCCCCCCCC-
T ss_conf 888513167772122331288535423466663133666787663354340588857631136888403-700102367-
Q ss_pred CCCCEEEECCCCC---------CCC-CHHHHHCCCCEEECCCCCHHHHHHHHHHHHHH---------CCCHHHHHHHHHH
Q ss_conf 6740055204554---------335-54544201206732645479999987776541---------2101111111233
Q gi|254780552|r 151 LSRFTLIAATTRV---------GLL-TNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKL---------TGLAVTDEAACEI 211 (334)
Q Consensus 151 ~~~f~lI~ATt~~---------~~l-~~~l~sR~~~~~~~~~~~~~el~~il~~~~~~---------~~i~~~~~al~~i 211 (334)
+ .||-+.+. .++ +|-+|.|..=++.|++++.+-+.+|+++.... -.++++++|..+|
T Consensus 654 -~---~iGF~~~~~~~~~~~Aikk~F~PEFRNRLDaii~F~~L~~~~~~~i~~K~l~el~~~L~eK~v~l~l~~~a~~~L 729 (774)
T TIGR02639 654 -N---PIGFGGERVEDKSEKAIKKLFSPEFRNRLDAIIAFNDLSEEVAEKIVKKFLDELQKQLNEKNVELELTDDAIKYL 729 (774)
T ss_pred -C---CCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEECHHHHHHH
T ss_conf -7---644255541233488897315874201334644169988999999999999999975530653787647899999
Q ss_pred HCCCC---CCHHHHHHHH
Q ss_conf 20221---0156788777
Q gi|254780552|r 212 AMRSR---GTPRIAGRLL 226 (334)
Q Consensus 212 a~~s~---Gd~R~AlnlL 226 (334)
|..+- =.+|-.-++.
T Consensus 730 A~KGY~~efGARpl~R~I 747 (774)
T TIGR02639 730 AEKGYDEEFGARPLARVI 747 (774)
T ss_pred HHHCCCCCCCCCHHHHHH
T ss_conf 863678110554489998
No 72
>KOG0736 consensus
Probab=99.87 E-value=3.9e-21 Score=148.77 Aligned_cols=181 Identities=24% Similarity=0.327 Sum_probs=121.2
Q ss_pred CHHHHCCHHHHHHHHHHHHHHHHHCCC-------CCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC------
Q ss_conf 877823979999999999998661467-------7670799737885577899999986189853125764433------
Q gi|254780552|r 26 TLEEFTGQVEACSNLKVFIEAAKARAE-------ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK------ 92 (334)
Q Consensus 26 ~l~dviGQ~~~~~~l~~~i~a~~~~~~-------~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~~~~~~------ 92 (334)
+|+||-|.+++|+.+.-.|+.-.++.+ +=+-+|||||||||||.+|+++|-|++.+|.++.||.+-+
T Consensus 670 ~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNMYVGqS 749 (953)
T KOG0736 670 SWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNMYVGQS 749 (953)
T ss_pred CHHCCCCHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHCEEEEEEECCHHHHHHHHCCH
T ss_conf 60015578999999998754754375665125431350588779998557999998754303678505889988774301
Q ss_pred HHHHHHHHHHHH--CCCHHHHHHHHHCCHH---------HHH----HHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEE
Q ss_conf 467666666410--1637888757616989---------999----9999863475100256787652000466740055
Q gi|254780552|r 93 AGDLAALLTNLE--DRDVLFIDEIHRLSII---------VEE----ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLI 157 (334)
Q Consensus 93 ~~dl~~~~~~~~--~~~vlfiDEihrl~~~---------~q~----~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI 157 (334)
-.+++.+|..+. ..||+|.||++.+.+. +.| -||--|+ + +-+ + +..++..|
T Consensus 750 E~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELD-g----ls~-~--------~s~~VFVi 815 (953)
T KOG0736 750 EENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELD-G----LSD-S--------SSQDVFVI 815 (953)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-C----CCC-C--------CCCCEEEE
T ss_conf 88899999985446974998312123275678878865408999999999862-6----667-8--------88865998
Q ss_pred ECCCCCCCCCHHHHH--CCCCEEECCCCCHHHH-HHHHHHHHHHCCCHHHHHH-HHHHHCCCCCCHHHH
Q ss_conf 204554335545442--0120673264547999-9987776541210111111-123320221015678
Q gi|254780552|r 158 AATTRVGLLTNPLQD--RFGIPIRLNFYEIEDL-KTIVQRGAKLTGLAVTDEA-ACEIAMRSRGTPRIA 222 (334)
Q Consensus 158 ~ATt~~~~l~~~l~s--R~~~~~~~~~~~~~el-~~il~~~~~~~~i~~~~~a-l~~ia~~s~Gd~R~A 222 (334)
||||||..|.++|+. ||.=.+.+.+-+.++- ..+++-..+ .+.+|+++ +.+||+.+.-.+--|
T Consensus 816 GATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTr--kFkLdedVdL~eiAk~cp~~~TGA 882 (953)
T KOG0736 816 GATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTR--KFKLDEDVDLVEIAKKCPPNMTGA 882 (953)
T ss_pred ECCCCCCCCCHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHH--HCCCCCCCCHHHHHHHCCCCCCHH
T ss_conf 2588855457655388765524885588567889999999887--702878767999996389677524
No 73
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.86 E-value=1.7e-20 Score=144.81 Aligned_cols=205 Identities=18% Similarity=0.152 Sum_probs=133.1
Q ss_pred CCHHHHCCHHHHHHHHHH----HHHHHHHCC-CCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC------H
Q ss_conf 987782397999999999----999866146-77670799737885577899999986189853125764433------4
Q gi|254780552|r 25 RTLEEFTGQVEACSNLKV----FIEAAKARA-EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK------A 93 (334)
Q Consensus 25 ~~l~dviGQ~~~~~~l~~----~i~a~~~~~-~~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~~~~~~------~ 93 (334)
.+|+||-|.+.+|.=++. +-..++.-| .++.-+||+||||||||.+|+++|++.+.+|..++++.+.. -
T Consensus 225 ~~~~~vGGl~~lK~wl~~r~~~f~~~a~~~gl~~PkGvLL~GpPG~GKtl~AKAvA~e~~~p~l~l~~~~l~~~~vGesE 304 (491)
T CHL00195 225 EKISDIGGLDNLKDWLKKRSTSFSKQAENYGLPTPRGLLLVGIQGTGKSLTAKAIANEWNLPLLRLDVGKLFGGIVGESE 304 (491)
T ss_pred CCCHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEHHHHHHHHCCHHH
T ss_conf 98041468899999999988986233664599999879997999987899999998663894699667997560067049
Q ss_pred HHHHHHHHHHH--CCCHHHHHHHHHC-C-----------HHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEEC
Q ss_conf 67666666410--1637888757616-9-----------89999999986347510025678765200046674005520
Q gi|254780552|r 94 GDLAALLTNLE--DRDVLFIDEIHRL-S-----------IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAA 159 (334)
Q Consensus 94 ~dl~~~~~~~~--~~~vlfiDEihrl-~-----------~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~A 159 (334)
+.++.++..+. ..+|+|||||+.. + +.....||.-|.+.. .++.+|+|
T Consensus 305 ~~~r~~f~~A~~~aP~ilfiDEidk~~~~~~~~~d~g~s~rv~~~~Lt~m~e~~------------------~~VfViat 366 (491)
T CHL00195 305 SRMRQMIQLAETISPCILWIDEIDKAFSGLDSKGDSGTSNRVLATFITWLSEKK------------------SPVFVVAT 366 (491)
T ss_pred HHHHHHHHHHHHHCCEEEEEEHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCC------------------CCEEEEEE
T ss_conf 999999999986198589974654542588888887232899999999864689------------------97699995
Q ss_pred CCCCCCCCHHHHH--CCCCEEECCCCCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHHH
Q ss_conf 4554335545442--0120673264547999998777654121-01111111233202210----156788777543334
Q gi|254780552|r 160 TTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTG-LAVTDEAACEIAMRSRG----TPRIAGRLLRRVRDF 232 (334)
Q Consensus 160 Tt~~~~l~~~l~s--R~~~~~~~~~~~~~el~~il~~~~~~~~-i~~~~~al~~ia~~s~G----d~R~AlnlLe~v~d~ 232 (334)
||++..|+++++- ||.-++.++.++.++-.+|++-..++.. ...++--+..+|+.+.| |...+.+ .+.-.
T Consensus 367 tN~~~~L~pellR~GRFD~~~~v~lP~~~~R~~I~~ihl~~~~~~~~~~~d~~~la~~t~gfsGAeIe~~v~---~A~~~ 443 (491)
T CHL00195 367 ANNIDSLPLELLRKGRFDEIFFLDLPNLEERELIFKIHLKRFRPNSWQNYDIEILSQLTNKFSGAEIEQSII---EAMHH 443 (491)
T ss_pred CCCCCCCCHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHH---HHHHH
T ss_conf 899755898770898777047648959899999999998544788755469999997685988899999999---99999
Q ss_pred HHHHCCCCCCHHHHHHHHH
Q ss_conf 5541588642778787654
Q gi|254780552|r 233 AEVAHAKTITREIADAALL 251 (334)
Q Consensus 233 a~~~~~~~i~~~~~~~~l~ 251 (334)
| ......++.+++..++.
T Consensus 444 A-~~~~r~~~~~dl~~a~~ 461 (491)
T CHL00195 444 A-FSEKREFTTEDICLALK 461 (491)
T ss_pred H-HHCCCCCCHHHHHHHHH
T ss_conf 9-87588665899999998
No 74
>KOG2004 consensus
Probab=99.86 E-value=6.4e-22 Score=153.55 Aligned_cols=213 Identities=24% Similarity=0.366 Sum_probs=145.3
Q ss_pred CCCCCCHHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCE-EEECCCCCCHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 44412057875078987782397999999999999866146776707-99737885577899999986189853125764
Q gi|254780552|r 11 NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVNFRSTSGPV 89 (334)
Q Consensus 11 ~~~~~~~~~~~lRP~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~-Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~~~ 89 (334)
..+.++.++.+-|-.-=+|-.|.+++|+++-.++.-.+.++..-+.+ .|+||||+||||+|+-||.+||.+|..+|-..
T Consensus 394 k~S~En~dl~~Ak~iLdeDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG 473 (906)
T KOG2004 394 KSSTENLDLARAKEILDEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGG 473 (906)
T ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHHCCCEEEEECCC
T ss_conf 78735303798987634653016889999999999875146678837998689987732189999998487469985366
Q ss_pred CCCHHHHHH---------------HHHHHH-CCCHHHHHHHHHCCHHHH----HHHHHHHHCCCCCCCCCCCC--CCCEE
Q ss_conf 433467666---------------666410-163788875761698999----99999863475100256787--65200
Q gi|254780552|r 90 IAKAGDLAA---------------LLTNLE-DRDVLFIDEIHRLSIIVE----EILYPAMEDFQLDLMVGEGP--SARSV 147 (334)
Q Consensus 90 ~~~~~dl~~---------------~~~~~~-~~~vlfiDEihrl~~~~q----~~Ll~~mE~~~i~i~~~~~~--~a~~~ 147 (334)
+..+.|+++ .+...+ ++.++.||||+.+.+..| .+||..++.-+- .++ +...+
T Consensus 474 ~tDvAeIkGHRRTYVGAMPGkiIq~LK~v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQN-----anFlDHYLdV 548 (906)
T KOG2004 474 MTDVAEIKGHRRTYVGAMPGKIIQCLKKVKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQN-----ANFLDHYLDV 548 (906)
T ss_pred CCCHHHHCCCCEEEECCCCHHHHHHHHHHCCCCCEEEEEHHHHHCCCCCCCHHHHHHHHCCHHHC-----CCHHHHCCCC
T ss_conf 34277642542110014884899999861778865885322341788779868999874396535-----5345420266
Q ss_pred ECCCCCCEEEECCCCCCCCCHHHHHCCCCEEECCCCCHHHHHHHHHHH-----HH-----HCCCHHHHHHHHHHHCC-CC
Q ss_conf 046674005520455433554544201206732645479999987776-----54-----12101111111233202-21
Q gi|254780552|r 148 KINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG-----AK-----LTGLAVTDEAACEIAMR-SR 216 (334)
Q Consensus 148 ~~~~~~f~lI~ATt~~~~l~~~l~sR~~~~~~~~~~~~~el~~il~~~-----~~-----~~~i~~~~~al~~ia~~-s~ 216 (334)
.++++++.||+.-|....|++||+||+-+ +.+.-|..+|-.+|.++. .+ -+.++++++|+..|+++ ++
T Consensus 549 p~DLSkVLFicTAN~idtIP~pLlDRMEv-IelsGYv~eEKv~IA~~yLip~a~~~~gl~~e~v~is~~al~~lI~~Ycr 627 (906)
T KOG2004 549 PVDLSKVLFICTANVIDTIPPPLLDRMEV-IELSGYVAEEKVKIAERYLIPQALKDCGLKPEQVKISDDALLALIERYCR 627 (906)
T ss_pred CCCHHHEEEEEECCCCCCCCHHHHHHHHE-EECCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHHHH
T ss_conf 42111068898536445698566412232-20367227989999998412578987499878658629999999999988
Q ss_pred C-CHHHHHHHHHHH
Q ss_conf 0-156788777543
Q gi|254780552|r 217 G-TPRIAGRLLRRV 229 (334)
Q Consensus 217 G-d~R~AlnlLe~v 229 (334)
- ..|..-.-++.+
T Consensus 628 EaGVRnLqk~iekI 641 (906)
T KOG2004 628 EAGVRNLQKQIEKI 641 (906)
T ss_pred HHHHHHHHHHHHHH
T ss_conf 87677899999999
No 75
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.86 E-value=2.1e-21 Score=150.39 Aligned_cols=232 Identities=20% Similarity=0.263 Sum_probs=143.4
Q ss_pred CCHHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCE-EEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCH
Q ss_conf 2057875078987782397999999999999866146776707-997378855778999999861898531257644334
Q gi|254780552|r 15 EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA 93 (334)
Q Consensus 15 ~~~~~~~lRP~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~-Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~~~~~~~ 93 (334)
...+...-|-.-=.|..|.+++|+++--++.-.+..+..-+++ +|+|||||||||+|+.||.+||.+|..+|-..+..-
T Consensus 309 d~~dl~~A~~iLd~dHyGL~~vKeRile~lAv~~~~~~~kg~IlclvGpPGvGKTSl~~sIA~al~r~f~rislGGv~De 388 (784)
T PRK10787 309 VKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDE 388 (784)
T ss_pred CCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCH
T ss_conf 75699999998765430657799999999999986246778779964699877246999999985898699806887888
Q ss_pred HHHHH------------HHHH---H-HCCCHHHHHHHHHCCHHH----HHHHHHHHHCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 67666------------6664---1-016378887576169899----99999986347510025678765200046674
Q gi|254780552|r 94 GDLAA------------LLTN---L-EDRDVLFIDEIHRLSIIV----EEILYPAMEDFQLDLMVGEGPSARSVKINLSR 153 (334)
Q Consensus 94 ~dl~~------------~~~~---~-~~~~vlfiDEihrl~~~~----q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~ 153 (334)
.++++ +... + ..+.|+++|||+.++... ..+||.+++.-+-.-+.. +-.-+.+++++
T Consensus 389 aeirGHrrTYvgampGrii~~l~~a~~~nPv~llDEiDK~~~~~~Gdp~salLEvLDpeQN~~F~D---hyl~~~~DlS~ 465 (784)
T PRK10787 389 AEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSD---HYLEVDYDLSD 465 (784)
T ss_pred HHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEHHHHHHCCCCCCCHHHHHHHHCCHHHCCCCCC---CEEECCCCHHH
T ss_conf 882564334344368389999997489885665003555224558998899998459765564000---32204645222
Q ss_pred CEEEECCCCCCCCCHHHHHCCCCEEECCCCCHHHHHHHHHHH----------HHHCCCHHHHHHHHHHHCCC--CCCHHH
Q ss_conf 005520455433554544201206732645479999987776----------54121011111112332022--101567
Q gi|254780552|r 154 FTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG----------AKLTGLAVTDEAACEIAMRS--RGTPRI 221 (334)
Q Consensus 154 f~lI~ATt~~~~l~~~l~sR~~~~~~~~~~~~~el~~il~~~----------~~~~~i~~~~~al~~ia~~s--~Gd~R~ 221 (334)
+.||+.-|... ++.||+||+- ++++.-|+.+|-.+|.++. .....+.++++|+..|++.- ....|.
T Consensus 466 v~Fi~TaN~~~-ip~pLlDRmE-~i~~~gYt~~eK~~Ia~~~l~p~~~~~~gl~~~~~~~~~~~~~~ii~~ytrEaGvR~ 543 (784)
T PRK10787 466 VMFVATSNSMN-IPAPLLDRME-VIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRS 543 (784)
T ss_pred EEEEEECCCCC-CCHHHHHHEE-EEEECCCCHHHHHHHHHHHCHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCC
T ss_conf 58997327677-8767763121-554116767889999997453999998289965674399999998753365444251
Q ss_pred HHHHHHHHHHHHH---H--HCCC--CCCHHHHHHHHH
Q ss_conf 8877754333455---4--1588--642778787654
Q gi|254780552|r 222 AGRLLRRVRDFAE---V--AHAK--TITREIADAALL 251 (334)
Q Consensus 222 AlnlLe~v~d~a~---~--~~~~--~i~~~~~~~~l~ 251 (334)
.-+.+..++.-+. + +..+ .|+.+.+++.+.
T Consensus 544 ler~i~~i~rk~~~~~~~~~~~~~~~i~~~~l~~~lg 580 (784)
T PRK10787 544 LEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLG 580 (784)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCEEECHHHHHHHHC
T ss_conf 6889999999999999707887855888999999829
No 76
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=3.7e-20 Score=142.80 Aligned_cols=211 Identities=28% Similarity=0.300 Sum_probs=138.6
Q ss_pred CCHHHHCCHHHHHHHHHHHHHHHHHCCC--------CCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC--H-
Q ss_conf 9877823979999999999998661467--------7670799737885577899999986189853125764433--4-
Q gi|254780552|r 25 RTLEEFTGQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--A- 93 (334)
Q Consensus 25 ~~l~dviGQ~~~~~~l~~~i~a~~~~~~--------~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~~~~~~--~- 93 (334)
-+|+|+.|.+.++..++..++....+.+ +...+|||||||||||.+|+.+|++++.+|..+.++.+.. +
T Consensus 239 v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~vG 318 (494)
T COG0464 239 VTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKWVG 318 (494)
T ss_pred CEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCHHHHHHHHH
T ss_conf 51453236377999999999999970887632589888369998899975899999987544982488433555407765
Q ss_pred ---HHHHHHHHHHH--CCCHHHHHHHHHCCH-----------HHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEE
Q ss_conf ---67666666410--163788875761698-----------99999999863475100256787652000466740055
Q gi|254780552|r 94 ---GDLAALLTNLE--DRDVLFIDEIHRLSI-----------IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLI 157 (334)
Q Consensus 94 ---~dl~~~~~~~~--~~~vlfiDEihrl~~-----------~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI 157 (334)
+.++.++..+. ..+|+|+||++.+-. .....||..|..-. ....+.+|
T Consensus 319 esek~ir~~F~~A~~~~p~iifiDEiDs~~~~r~~~~~~~~~rv~~~ll~~~d~~e----------------~~~~v~vi 382 (494)
T COG0464 319 ESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIE----------------KAEGVLVI 382 (494)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCC----------------CCCCEEEE
T ss_conf 99999999999999669988974886667412899876379999999999974754----------------43764899
Q ss_pred ECCCCCCCCCHHHHH--CCCCEEECCCCCHHHHHHHHHHHHHHCCCH-HHHHHHHHHHCCCCC-CHHHHHHHHHHHHHHH
Q ss_conf 204554335545442--012067326454799999877765412101-111111233202210-1567887775433345
Q gi|254780552|r 158 AATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLA-VTDEAACEIAMRSRG-TPRIAGRLLRRVRDFA 233 (334)
Q Consensus 158 ~ATt~~~~l~~~l~s--R~~~~~~~~~~~~~el~~il~~~~~~~~i~-~~~~al~~ia~~s~G-d~R~AlnlLe~v~d~a 233 (334)
+|||++..+.++++- ||...+.+..++.++-.+|++......+.. .++--+..+++...| +..+.-++++.+.-.+
T Consensus 383 ~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~ 462 (494)
T COG0464 383 AATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEA 462 (494)
T ss_pred ECCCCCCCCCHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 64798332687562436630378717989899999999985415651155641999998752778999999999999989
Q ss_pred HHHC-CCCCCHHHHHHHHH
Q ss_conf 5415-88642778787654
Q gi|254780552|r 234 EVAH-AKTITREIADAALL 251 (334)
Q Consensus 234 ~~~~-~~~i~~~~~~~~l~ 251 (334)
.... ...++.++..+++.
T Consensus 463 ~~~~~~~~~~~~~~~~a~~ 481 (494)
T COG0464 463 LREARRREVTLDDFLDALK 481 (494)
T ss_pred HHHCCCCCCCHHHHHHHHH
T ss_conf 9854577634999999986
No 77
>TIGR01242 26Sp45 26S proteasome subunit P45 family; InterPro: IPR005937 Intracellular proteins, including short-lived proteins such as cyclin, Mos, Myc, p53, NF-kappaB, and IkappaB, are degraded by the ubiquitin-proteasome system. The 26S proteasome (a 2 MDa complex) is made up of two subcomplexes: the 20S proteasome and the regulatory complex. The former is a 700 kDa cylindrical protease complex consisting of four stacks of heptameric rings with 28 subunits (i.e., 7777) with molecular masses of about 20-35 kDa, whereas the latter is a 700-1000 kDa complex consisting of at least 18 subunits with molecular masses of 28-110 kDa, including 6 putative ATPases (Rpt1-Rpt6) and 12 non-ATPase subunits (Rpn1-12). Members of the 26S proteasome subunit P45 family: ATPase p45/Sug1/Rpt6 may be phosphorylated within the proteasome. This phosphorylation event may play a key role in ATP-dependent proteolysis because a good correlation exists between the inhibition pattern of protein kinase inhibitors against the phosphorylation of p45 and that against the ATP-dependent proteolytic activity , . More information about these protein can be found at Protein of the Month: AAA ATPases .; GO: 0016787 hydrolase activity, 0030163 protein catabolic process, 0005634 nucleus, 0005737 cytoplasm.
Probab=99.85 E-value=6.2e-21 Score=147.52 Aligned_cols=182 Identities=25% Similarity=0.404 Sum_probs=129.3
Q ss_pred CCC-CHHHHCCHHHHHHHHHHHHHHHHHCC--------CCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC--
Q ss_conf 789-87782397999999999999866146--------7767079973788557789999998618985312576443--
Q gi|254780552|r 23 RPR-TLEEFTGQVEACSNLKVFIEAAKARA--------EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA-- 91 (334)
Q Consensus 23 RP~-~l~dviGQ~~~~~~l~~~i~a~~~~~--------~~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~~~~~-- 91 (334)
||+ +++|+-|.+.-+..++-+++--.++- +++.-+|||||||||||.+|+++|++.+..|+.+-|+.+-
T Consensus 116 ~P~V~y~diGGL~~Q~~E~~E~v~LPlk~PeLF~~vGI~PPKGvLLyGPPGtGKTLlAKAvA~et~ATFIrvVgSElV~K 195 (364)
T TIGR01242 116 RPNVSYEDIGGLEKQIREIREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRK 195 (364)
T ss_pred CCCEEEECCCCHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCEEEEEEHHHHHHH
T ss_conf 78233402678789999998887346888316776288989865700757976889999863145512688604444444
Q ss_pred ----CHHHHHHHHHHHHC--CCHHHHHHHHHCC-----------HHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCC
Q ss_conf ----34676666664101--6378887576169-----------899999999863475100256787652000466740
Q gi|254780552|r 92 ----KAGDLAALLTNLED--RDVLFIDEIHRLS-----------IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRF 154 (334)
Q Consensus 92 ----~~~dl~~~~~~~~~--~~vlfiDEihrl~-----------~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f 154 (334)
++.=++.+|.-+++ .+|+|||||+... +..|-+|++-+-+- .|+.++ ..+
T Consensus 196 yIGEGArLV~~~F~LAkEKaPsIiFIDEiDAiaakR~~~~TsGdREV~RTlmQLLAEl-------DGFd~r------g~V 262 (364)
T TIGR01242 196 YIGEGARLVREVFELAKEKAPSIIFIDEIDAIAAKRVDSSTSGDREVQRTLMQLLAEL-------DGFDPR------GNV 262 (364)
T ss_pred HHCCHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH-------CCCCCC------CCE
T ss_conf 4133168999999985306981686101333543211467787315788999999752-------488876------761
Q ss_pred EEEECCCCCCCCCHHHHH--CCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHH-HHHHHCCCCCCH
Q ss_conf 055204554335545442--01206732645479999987776541210111111-123320221015
Q gi|254780552|r 155 TLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEA-ACEIAMRSRGTP 219 (334)
Q Consensus 155 ~lI~ATt~~~~l~~~l~s--R~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~a-l~~ia~~s~Gd~ 219 (334)
..|+||||+..|.|+++- ||..++....++.+--.+|++-...+. ++.+++ +..||+..+|-.
T Consensus 263 kviaATNR~DilDPA~LRPGRFDR~IEVPlP~~~GR~eIlkiHTr~~--~la~dVdl~~~A~~TeG~s 328 (364)
T TIGR01242 263 KVIAATNRPDILDPAILRPGRFDRIIEVPLPDFEGRLEILKIHTRKM--KLAEDVDLEAIAKLTEGAS 328 (364)
T ss_pred EEEEECCCCHHCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHCCC--CCCCCCCHHHHHHHHCCCC
T ss_conf 68872076202043214888613257316978322056655521000--0123568799998747886
No 78
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.85 E-value=2.7e-20 Score=143.61 Aligned_cols=152 Identities=30% Similarity=0.399 Sum_probs=107.3
Q ss_pred HHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHH---H--
Q ss_conf 78239799999999999986614677670799737885577899999986189853125764433467666666---4--
Q gi|254780552|r 28 EEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLT---N-- 102 (334)
Q Consensus 28 ~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~~~~~~~~dl~~~~~---~-- 102 (334)
..++|+++++...-.++.+ -.|+||.||||||||++|+.+|+.++.+|..++......+.|+.+... .
T Consensus 24 ~~~~g~~~~~~~~l~a~~~-------~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~ 96 (329)
T COG0714 24 KVVVGDEEVIELALLALLA-------GGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLL 96 (329)
T ss_pred CCCCCCHHHHHHHHHHHHC-------CCCEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCHHHHCCHHHHHHHHC
T ss_conf 6552669999999999985-------997787798987779999999998389818995689988888205688876642
Q ss_pred -HH-----C----CC---HHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCC------
Q ss_conf -10-----1----63---78887576169899999999863475100256787652000466740055204554------
Q gi|254780552|r 103 -LE-----D----RD---VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV------ 163 (334)
Q Consensus 103 -~~-----~----~~---vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~------ 163 (334)
.+ . .. |+|+|||.|.++..|.+||++|+++++.+ .+..+ .+.+ ++|.+| ||+++
T Consensus 97 ~~~~~~~~~gpl~~~~~~ill~DEInra~p~~q~aLl~~l~e~~vt~-~~~~~----~~~~-~~f~vi-aT~Np~e~~g~ 169 (329)
T COG0714 97 EPGEFRFVPGPLFAAVRVILLLDEINRAPPEVQNALLEALEERQVTV-PGLTT----IRLP-PPFIVI-ATQNPGEYEGT 169 (329)
T ss_pred CCCEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCEEEE-CCCCC----CCCC-CCCEEE-EECCCCCCCCC
T ss_conf 57718984687334513389987034589889999999997268970-79665----3379-987899-82686765788
Q ss_pred CCCCHHHHHCCCCEEECCCCCHHHHHHHHH
Q ss_conf 335545442012067326454799999877
Q gi|254780552|r 164 GLLTNPLQDRFGIPIRLNFYEIEDLKTIVQ 193 (334)
Q Consensus 164 ~~l~~~l~sR~~~~~~~~~~~~~el~~il~ 193 (334)
+-++.++++||.+...++|+..++...++.
T Consensus 170 ~~l~eA~ldRf~~~~~v~yp~~~~e~~~i~ 199 (329)
T COG0714 170 YPLPEALLDRFLLRIYVDYPDSEEEERIIL 199 (329)
T ss_pred CCCCHHHHCCCEEEEECCCCCCHHHHHHHH
T ss_conf 789988881038877648997388999998
No 79
>TIGR02928 TIGR02928 orc1/cdc6 family replication initiation protein; InterPro: IPR014277 This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. The proteins in this entry are found exclusively in the archaea. Several members may be found in a genome and interact with each other..
Probab=99.85 E-value=1e-19 Score=140.13 Aligned_cols=267 Identities=21% Similarity=0.255 Sum_probs=172.4
Q ss_pred HHCCHHHHHHHHHHHHHHHHHC-CCCCCCEEEECCCCCCHHHHHHHHHHHC---------C-CCCCCCCCCCCCCHH---
Q ss_conf 8239799999999999986614-6776707997378855778999999861---------8-985312576443346---
Q gi|254780552|r 29 EFTGQVEACSNLKVFIEAAKAR-AEALDHVLFVGPPGLGKTTLAQVVAREL---------G-VNFRSTSGPVIAKAG--- 94 (334)
Q Consensus 29 dviGQ~~~~~~l~~~i~a~~~~-~~~~~h~Lf~GPpG~GKTtlA~iiA~~l---------~-~~~~~~s~~~~~~~~--- 94 (334)
.++|=|+-+..+..+++-. .+ |..++++++|||+|||||+.++-+.+++ . +..+.+|+.......
T Consensus 18 ~i~hRdeqI~~l~~~L~~~-l~PG~~P~Ni~iYGkTGtGKT~vt~~v~~~l~~~~~~~d~~D~~~~~~NC~~~~T~y~~~ 96 (383)
T TIGR02928 18 RIVHRDEQIEELAKALRPI-LRPGSRPSNIFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRDVSTVYINCQILDTSYQVL 96 (383)
T ss_pred CCCCCHHHHHHHHHHHHHH-HCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHH
T ss_conf 4668678999999998875-067489872588788898788999999999999862269971589997785468469999
Q ss_pred -H---------------------------HHHHHH-HHHCCCHHHHHHHHHC-CHHHHH-----HHHHHH---HCCCCCC
Q ss_conf -7---------------------------666666-4101637888757616-989999-----999986---3475100
Q gi|254780552|r 95 -D---------------------------LAALLT-NLEDRDVLFIDEIHRL-SIIVEE-----ILYPAM---EDFQLDL 136 (334)
Q Consensus 95 -d---------------------------l~~~~~-~~~~~~vlfiDEihrl-~~~~q~-----~Ll~~m---E~~~i~i 136 (334)
. +...+. ....--|+.+|||+.| .+...| .||.-. +.+.+
T Consensus 97 ~~L~~~ln~~~~~~~vP~tG~s~~~~~~~l~~~l~~~~~~~~~ivLDEiD~Lv~~~~d~PAyS~~LY~L~Ra~~~~~~-- 174 (383)
T TIGR02928 97 VELANQLNRRGSGEEVPTTGLSTSEVFRELYKELNRERGDSLIIVLDEIDKLVRKDDDDPAYSKLLYQLSRARENGDL-- 174 (383)
T ss_pred HHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHCCCCCCHHHHHHHHHHHHHHHCCCC--
T ss_conf 999998515778888988778789999999999832018879998623102215888880787885343310003577--
Q ss_pred CCCCCCCCCEEECCCCCCEEEECCCCCC---CCCHHHHHCCC-CEEECCCCCHHHHHHHHHHHH-HH-C-CCHHHHHHHH
Q ss_conf 2567876520004667400552045543---35545442012-067326454799999877765-41-2-1011111112
Q gi|254780552|r 137 MVGEGPSARSVKINLSRFTLIAATTRVG---LLTNPLQDRFG-IPIRLNFYEIEDLKTIVQRGA-KL-T-GLAVTDEAAC 209 (334)
Q Consensus 137 ~~~~~~~a~~~~~~~~~f~lI~ATt~~~---~l~~~l~sR~~-~~~~~~~~~~~el~~il~~~~-~~-~-~i~~~~~al~ 209 (334)
+-.+.-.||-+|+.. .|.+=.+|.|. --+.|.||+.+||..||+... +. . .=-++++++.
T Consensus 175 -------------~~~~vgvIgISND~~f~~~Ld~RVkSsL~~eei~FpPYdA~eL~~IL~~R~v~~AF~dGvl~d~VI~ 241 (383)
T TIGR02928 175 -------------ENAKVGVIGISNDLKFRENLDPRVKSSLCEEEIVFPPYDAEELRDILENRAVEKAFYDGVLDDGVIP 241 (383)
T ss_pred -------------CCCCEEEEEEECCCHHHHHCCCCEECCCCCCCCEECCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHH
T ss_conf -------------8853489998657143644575301324874004079886999999972031203368854622799
Q ss_pred H---HHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HCCC-----CHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 3---3202210156788777543334554158864277878765421-0000-----00467768899999975186620
Q gi|254780552|r 210 E---IAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL-AIDK-----MGFDQLDLRYLTMIARNFGGGPV 280 (334)
Q Consensus 210 ~---ia~~s~Gd~R~AlnlLe~v~d~a~~~~~~~i~~~~~~~~l~~~-~id~-----~Gl~~~d~~~L~~l~~~~~~g~~ 280 (334)
. ||....||+|.||.||..+-+.|.-+|...|+.+||++|-... ..+. .||....+..|.++..
T Consensus 242 lcAA~aAq~hGDAR~AiDLLR~AGe~A~~~g~~~Vt~~HV~~A~e~~PE~~r~~e~~~~Lp~h~k~~L~A~~~------- 314 (383)
T TIGR02928 242 LCAALAAQEHGDARKAIDLLRVAGEIAEREGAERVTEDHVEEAQEKIPEVDRVLELIRGLPTHSKLVLLAIAN------- 314 (383)
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHH-------
T ss_conf 9999862067878999999998768753157631008889999983222889999860798679999999999-------
Q ss_pred HHHHHHHHH-CCCCCCCHHHHHHHHHHHHHCCCCHHH-HHHHHH
Q ss_conf 699999982-874567467899999983430587189-999998
Q gi|254780552|r 281 GIETISAGL-SEPRDAIEDLIEPYMIQQGFIQRTPRG-RLLMPI 322 (334)
Q Consensus 281 ~~~~isA~~-ks~RgS~~daa~~yL~r~g~~~~~prg-RrL~~~ 322 (334)
+++-. +..--+-....+-|--=+..++.||.+ ||+.-+
T Consensus 315 ----l~~~~~~~~~~~t~~vY~~Y~~~c~~~~~dpl~~rR~~~~ 354 (383)
T TIGR02928 315 ----LAAESPEEDPFRTGEVYEVYKELCEDIGVDPLTQRRISDL 354 (383)
T ss_pred ----HHHHCCCCCEEEEHHHHHHHHHHHHHHCCCCCCHHHHHHH
T ss_conf ----9851678873661277899999987626776614679998
No 80
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=5.1e-21 Score=148.06 Aligned_cols=215 Identities=25% Similarity=0.344 Sum_probs=137.4
Q ss_pred HHHCCHHHHHHHHHHHHHHHHHCCCCCCC-EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHH-------
Q ss_conf 78239799999999999986614677670-7997378855778999999861898531257644334676666-------
Q gi|254780552|r 28 EEFTGQVEACSNLKVFIEAAKARAEALDH-VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAAL------- 99 (334)
Q Consensus 28 ~dviGQ~~~~~~l~~~i~a~~~~~~~~~h-~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~~~~~~~~dl~~~------- 99 (334)
.|-.|.+++|.++-.++.-.+..++.-.+ ++|+|||||||||+++-||+.+|.+|+.+| +.++.|-+.+
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~s---LGGvrDEAEIRGHRRTY 399 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRIS---LGGVRDEAEIRGHRRTY 399 (782)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEE---CCCCCCHHHHCCCCCCC
T ss_conf 355671168999999999998614678857999789988701189999999589779995---47654277753553123
Q ss_pred --------HHHHH----CCCHHHHHHHHHCCHHHH----HHHHHHHHCCCCCCCCCCCCCC--CEEECCCCCCEEEECCC
Q ss_conf --------66410----163788875761698999----9999986347510025678765--20004667400552045
Q gi|254780552|r 100 --------LTNLE----DRDVLFIDEIHRLSIIVE----EILYPAMEDFQLDLMVGEGPSA--RSVKINLSRFTLIAATT 161 (334)
Q Consensus 100 --------~~~~~----~~~vlfiDEihrl~~~~q----~~Ll~~mE~~~i~i~~~~~~~a--~~~~~~~~~f~lI~ATt 161 (334)
++.++ .+.|+.+|||+.++.+.+ .+||.+++.=+- ..+.. .-+..+++.+.||+.-|
T Consensus 400 IGaMPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN-----~~F~DhYLev~yDLS~VmFiaTAN 474 (782)
T COG0466 400 IGAMPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQN-----NTFSDHYLEVPYDLSKVMFIATAN 474 (782)
T ss_pred CCCCCHHHHHHHHHHCCCCCEEEEECHHHCCCCCCCCHHHHHHHHCCHHHC-----CCHHHCCCCCCCCHHHEEEEEECC
T ss_conf 356872899999986776874786403331677778868888862697656-----761222016766443258886037
Q ss_pred CCCCCCHHHHHCCCCEEECCCCCHHHHHHHHHHH----------HHHCCCHHHHHHHHHHHCCC--CCCHHHHHHHHHHH
Q ss_conf 5433554544201206732645479999987776----------54121011111112332022--10156788777543
Q gi|254780552|r 162 RVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG----------AKLTGLAVTDEAACEIAMRS--RGTPRIAGRLLRRV 229 (334)
Q Consensus 162 ~~~~l~~~l~sR~~~~~~~~~~~~~el~~il~~~----------~~~~~i~~~~~al~~ia~~s--~Gd~R~AlnlLe~v 229 (334)
....||.||+||+- ++++.-|+.+|=.+|.++. .+...+.++++|+..|++.- .-..|..-+-+..+
T Consensus 475 sl~tIP~PLlDRME-iI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~YTREAGVR~LeR~i~ki 553 (782)
T COG0466 475 SLDTIPAPLLDRME-VIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDIIRYYTREAGVRNLEREIAKI 553 (782)
T ss_pred CCCCCCHHHHCCEE-EEEECCCCHHHHHHHHHHHCCHHHHHHCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 51329867843030-56426888699999999844568999759982335565899999999876762103899999999
Q ss_pred HHHHH---H-HCCC---CCCHHHHHHHHH
Q ss_conf 33455---4-1588---642778787654
Q gi|254780552|r 230 RDFAE---V-AHAK---TITREIADAALL 251 (334)
Q Consensus 230 ~d~a~---~-~~~~---~i~~~~~~~~l~ 251 (334)
+.-+. + .+.+ .|+...+++-+.
T Consensus 554 ~RK~~~~i~~~~~k~~~~i~~~~l~~yLG 582 (782)
T COG0466 554 CRKAAKKILLKKEKSIVKIDEKNLKKYLG 582 (782)
T ss_pred HHHHHHHHHHCCCCCCEEECHHHHHHHHC
T ss_conf 99999999725756624427889999739
No 81
>KOG1942 consensus
Probab=99.84 E-value=7e-20 Score=141.09 Aligned_cols=126 Identities=30% Similarity=0.317 Sum_probs=105.7
Q ss_pred CHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCC-------------CCCCCHHHHHC
Q ss_conf 37888757616989999999986347510025678765200046674005520455-------------43355454420
Q gi|254780552|r 107 DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTR-------------VGLLTNPLQDR 173 (334)
Q Consensus 107 ~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~-------------~~~l~~~l~sR 173 (334)
.||||||+|+|.-..+.+|..++|+-- .| +.|+|||+ |+-+++-|+||
T Consensus 298 GVLFIDEVhMLDiEcFTyL~kalES~i------------------aP-ivifAsNrG~~~irGt~d~~sPhGip~dllDR 358 (456)
T KOG1942 298 GVLFIDEVHMLDIECFTYLHKALESPI------------------AP-IVIFASNRGMCTIRGTEDILSPHGIPPDLLDR 358 (456)
T ss_pred CCEEEEEHHHHHHHHHHHHHHHHCCCC------------------CC-EEEEECCCCCEEECCCCCCCCCCCCCHHHHHH
T ss_conf 626863013242699999999862778------------------75-69996277610221776787878899778612
Q ss_pred CCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 120673264547999998777654121011111112332022-1015678877754333455415886427787876542
Q gi|254780552|r 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRS-RGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 (334)
Q Consensus 174 ~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s-~Gd~R~AlnlLe~v~d~a~~~~~~~i~~~~~~~~l~~ 252 (334)
. ++++..+|+.+++.+|+++.++.++++++++|+..++..+ +-+.|-|+.+|--+.-.|..+|.+.|..++++++-.+
T Consensus 359 l-~Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~gt~tsLRy~vqLl~p~~~~ak~~g~~~i~v~dvee~~~L 437 (456)
T KOG1942 359 L-LIIRTLPYDEEEIRQIIKIRAQVEGLQVEEEALDLLAEIGTSTSLRYAVQLLTPASILAKTNGRKEISVEDVEEVTEL 437 (456)
T ss_pred E-EEEEECCCCHHHHHHHHHHHHHHHCCEECHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHCCCCEEECCCHHHHHHH
T ss_conf 6-678603699899999999987651423228899998760541457889885378889998719853431248999999
No 82
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=3.6e-20 Score=142.87 Aligned_cols=210 Identities=30% Similarity=0.362 Sum_probs=141.9
Q ss_pred CCHHHHCCHHHHHHHHHHHHHHHHH-------CCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC------
Q ss_conf 9877823979999999999998661-------467767079973788557789999998618985312576443------
Q gi|254780552|r 25 RTLEEFTGQVEACSNLKVFIEAAKA-------RAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA------ 91 (334)
Q Consensus 25 ~~l~dviGQ~~~~~~l~~~i~a~~~-------~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~~~~~------ 91 (334)
.+|+||.|.++++..+...+.-.+. .++.+..+|++||||||||++|+.+|.|.+++|..+||+.+-
T Consensus 147 v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfVGv 226 (596)
T COG0465 147 VTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGV 226 (596)
T ss_pred CCHHHHCCCHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHCCCCCCCEECCCHHHHHHHCCC
T ss_conf 67566418679999999999986385566752353456526855999872789999845468983530344464431478
Q ss_pred CHHHHHHHHHHHHC--CCHHHHHHHHHCCHHH--------------HHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCE
Q ss_conf 34676666664101--6378887576169899--------------9999998634751002567876520004667400
Q gi|254780552|r 92 KAGDLAALLTNLED--RDVLFIDEIHRLSIIV--------------EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFT 155 (334)
Q Consensus 92 ~~~dl~~~~~~~~~--~~vlfiDEihrl~~~~--------------q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~ 155 (334)
+++-++..+.+++. .+|+|||||+...+.. -+-||.-|+-|.- + ....
T Consensus 227 GAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~--------~--------~gvi 290 (596)
T COG0465 227 GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGG--------N--------EGVI 290 (596)
T ss_pred CCHHHHHHHHHHHCCCCCEEEEEHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC--------C--------CCEE
T ss_conf 83888999998551599669876343314545778899806999999888852015788--------8--------7548
Q ss_pred EEECCCCCCCCCHHHH--HCCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHH-HHHHHCCCCC-CHHHHHHHHHHHHH
Q ss_conf 5520455433554544--201206732645479999987776541210111111-1233202210-15678877754333
Q gi|254780552|r 156 LIAATTRVGLLTNPLQ--DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEA-ACEIAMRSRG-TPRIAGRLLRRVRD 231 (334)
Q Consensus 156 lI~ATt~~~~l~~~l~--sR~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~a-l~~ia~~s~G-d~R~AlnlLe~v~d 231 (334)
+|+||++|..+.++|+ .||..+...+.++.....+|++-..+ +..+.+++ +..||+..-| ..=+--|++.-+--
T Consensus 291 viaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~--~~~l~~~V~l~~iAr~tpGfsGAdL~nl~NEAal 368 (596)
T COG0465 291 VIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAK--NKPLAEDVDLKKIARGTPGFSGADLANLLNEAAL 368 (596)
T ss_pred EECCCCCCCCCHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHH--CCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf 85267874333176528877662554478515657888788641--5777766788898643778563067655668899
Q ss_pred HHHHHCCCCCCHHHHHHHHHH
Q ss_conf 455415886427787876542
Q gi|254780552|r 232 FAEVAHAKTITREIADAALLR 252 (334)
Q Consensus 232 ~a~~~~~~~i~~~~~~~~l~~ 252 (334)
+|.-.+...|+..+..++...
T Consensus 369 ~aar~n~~~i~~~~i~ea~dr 389 (596)
T COG0465 369 LAARRNKKEITMRDIEEAIDR 389 (596)
T ss_pred HHHHHCCEEEECCCHHHHHHH
T ss_conf 998836846753453889999
No 83
>PRK05201 hslU ATP-dependent protease ATP-binding subunit; Provisional
Probab=99.83 E-value=5e-20 Score=142.01 Aligned_cols=219 Identities=24% Similarity=0.361 Sum_probs=146.6
Q ss_pred CHHHH-CCHHHHHHHHHHHHHHHHHCCC---------CCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHH-
Q ss_conf 87782-3979999999999998661467---------767079973788557789999998618985312576443346-
Q gi|254780552|r 26 TLEEF-TGQVEACSNLKVFIEAAKARAE---------ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG- 94 (334)
Q Consensus 26 ~l~dv-iGQ~~~~~~l~~~i~a~~~~~~---------~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~~~~~~~~- 94 (334)
.||.| |||+++|+.+.+++.....|.. .+.++|+.||.|||||-+||-+|+-++.+|...-|.-++.++
T Consensus 12 ~LD~yIIGQ~~AKkavAVAlrNr~RR~~l~~~lr~Ei~pkNILmIGPTGvGKTeIARrLAkl~~aPFvkveATk~TEvGY 91 (442)
T PRK05201 12 ELDKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGY 91 (442)
T ss_pred HHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCC
T ss_conf 85360108277667877788777875316622123346431688788886678999999998489858752131000343
Q ss_pred ----------HHHH------------------------------------------------------------------
Q ss_conf ----------7666------------------------------------------------------------------
Q gi|254780552|r 95 ----------DLAA------------------------------------------------------------------ 98 (334)
Q Consensus 95 ----------dl~~------------------------------------------------------------------ 98 (334)
|+..
T Consensus 92 vGrDVEsiIrdLv~~a~~~~k~~~~~~v~~~A~~~a~~ril~~L~~~~~~~~~~~~~~~~~~~tre~~r~~Lr~G~Ldd~ 171 (442)
T PRK05201 92 VGRDVESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEEEESSATRQKFRKKLREGELDDK 171 (442)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC
T ss_conf 56437889999999999999999999999999999999999985586555555545420236789999999865886655
Q ss_pred ----------------------------------------------------------------------HHHHHHCCCH
Q ss_conf ----------------------------------------------------------------------6664101637
Q gi|254780552|r 99 ----------------------------------------------------------------------LLTNLEDRDV 108 (334)
Q Consensus 99 ----------------------------------------------------------------------~~~~~~~~~v 108 (334)
.+..+.+..|
T Consensus 172 ~IeIev~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~kkr~~tVkeA~~iL~~eEa~klid~d~v~~eAi~~aEq~GI 251 (442)
T PRK05201 172 EIEIEVADAPGVEIMGPPGMEEMGNQLQDMFGNLGPKKKKKRKLKVKEARKLLIEEEAAKLVDQEEIKQEAIERVEQNGI 251 (442)
T ss_pred EEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
T ss_conf 57886157777777788751556667998764027888740464699999999999998624889999999998876170
Q ss_pred HHHHHHHHCCH------------HHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECC----CCCCCCCHHHHH
Q ss_conf 88875761698------------99999999863475100256787652000466740055204----554335545442
Q gi|254780552|r 109 LFIDEIHRLSI------------IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAAT----TRVGLLTNPLQD 172 (334)
Q Consensus 109 lfiDEihrl~~------------~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~AT----t~~~~l~~~l~s 172 (334)
+|||||+.+.+ .+|-.|||.+|.-.+.+ .-| .++-.+..||++- ..|.-|.|.|.-
T Consensus 252 VFIDEIDKIa~~~~~~g~DVS~EGVQrdLLpivEGt~V~t--K~G------~V~TdhILFIasGAFh~sKPSDLIPEl~G 323 (442)
T PRK05201 252 VFIDEIDKIAKRGEGSGPDVSREGVQRDLLPLVEGSTVST--KYG------MVKTDHILFIASGAFHVAKPSDLIPELQG 323 (442)
T ss_pred EEECHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCC--CCC------CCCCCEEEEECCCCCCCCCCCHHHHHHCC
T ss_conf 4511465653035788989773307888788753885556--777------60255034550450014782022498717
Q ss_pred CCCCEEECCCCCHHHHHHHHHH--------H---HHHC--CCHHHHHHHHHHHCCCCC--------CHHHHHHHHHHHHH
Q ss_conf 0120673264547999998777--------6---5412--101111111233202210--------15678877754333
Q gi|254780552|r 173 RFGIPIRLNFYEIEDLKTIVQR--------G---AKLT--GLAVTDEAACEIAMRSRG--------TPRIAGRLLRRVRD 231 (334)
Q Consensus 173 R~~~~~~~~~~~~~el~~il~~--------~---~~~~--~i~~~~~al~~ia~~s~G--------d~R~AlnlLe~v~d 231 (334)
||.+...|++++.+++..|+.. . .+.+ .+.++++|+..||+.+-- .+|..-.++|.+..
T Consensus 324 RlPv~v~L~~L~~~dl~~ILtepknsL~kQy~~Lf~~egv~L~Ft~~Al~~IA~~A~~~n~~~~~iGAR~L~tI~E~vl~ 403 (442)
T PRK05201 324 RFPIRVELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQVNEKTENIGARRLHTVMEKLLE 403 (442)
T ss_pred CCEEEEECCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
T ss_conf 55058882449999999996786157899999998624967998479999999999985144766773788999999989
Q ss_pred ---HH--HHHC-CCCCCHHHHHHHHHH
Q ss_conf ---45--5415-886427787876542
Q gi|254780552|r 232 ---FA--EVAH-AKTITREIADAALLR 252 (334)
Q Consensus 232 ---~a--~~~~-~~~i~~~~~~~~l~~ 252 (334)
|. ...+ .-.||.+.|++-+..
T Consensus 404 d~~Fe~p~~~~~~v~I~~~~V~~~l~~ 430 (442)
T PRK05201 404 DISFEAPDRSGEKITIDAAYVDEKLGD 430 (442)
T ss_pred HHCCCCCCCCCCEEEECHHHHHHHHHH
T ss_conf 861468899997799889999999988
No 84
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=99.82 E-value=3.7e-19 Score=136.70 Aligned_cols=146 Identities=27% Similarity=0.330 Sum_probs=100.8
Q ss_pred CCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCC---CEEECCCC-CCEEEECCCC--CCCCCHHHHHCCC---C
Q ss_conf 637888757616989999999986347510025678765---20004667-4005520455--4335545442012---0
Q gi|254780552|r 106 RDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSA---RSVKINLS-RFTLIAATTR--VGLLTNPLQDRFG---I 176 (334)
Q Consensus 106 ~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a---~~~~~~~~-~f~lI~ATt~--~~~l~~~l~sR~~---~ 176 (334)
+.|||||||+.|....|+.|+.+|+++++.|. +.++.+ ...+-++| +|.+|+|+|. .+.+.++|||||. +
T Consensus 227 gGvL~IDei~~L~~~~q~~Ll~alq~~k~~I~-g~~e~SsgA~v~tepvP~Df~lV~aGn~d~~~~m~palrsri~g~gy 305 (637)
T PRK13765 227 KGVLFIDEINTLRLESQQSLLTAMQEKKYPIT-GQSERSSGAMVRTEPVPCDFIMVAAGNLDAIENMHPALRSRIRGYGY 305 (637)
T ss_pred CCEEEEEHHHHCCHHHHHHHHHHHHCCCEECC-CCCCCCCCCCCCCCCCCEEEEEEEECCHHHHHHCCHHHHHHHHCCCE
T ss_conf 85699844564798899999999965915323-68866677625789866136999953727666439988865104774
Q ss_pred EEECCCC---CHHHHHHHHH---HHHHHCC-CH-HHHHHHHHHHCCCC---C-------CHHHHHHHHHHHHHHHHHHCC
Q ss_conf 6732645---4799999877---7654121-01-11111123320221---0-------156788777543334554158
Q gi|254780552|r 177 PIRLNFY---EIEDLKTIVQ---RGAKLTG-LA-VTDEAACEIAMRSR---G-------TPRIAGRLLRRVRDFAEVAHA 238 (334)
Q Consensus 177 ~~~~~~~---~~~el~~il~---~~~~~~~-i~-~~~~al~~ia~~s~---G-------d~R~AlnlLe~v~d~a~~~~~ 238 (334)
...|+.. +++...++++ ..++..+ +. ++.+|...|.+.+. | .+|...++++.+-++|..++.
T Consensus 306 ev~~~~~m~dt~enr~k~arfiaqev~~dg~iPhfdr~AVaeII~eA~R~AG~k~kLTLrLReL~~LIReAgdiA~~eg~ 385 (637)
T PRK13765 306 EVYMNDTMEDTPENRKKLVRFVAQEVKRDGKIPHFDREAVEEIIREARRRAGRKGHLTLKLRDLGGLVRVAGDIARSEGA 385 (637)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99823567787889999999999999743888999989999999999974054566305289887499998899997599
Q ss_pred CCCCHHHHHHHHHH
Q ss_conf 86427787876542
Q gi|254780552|r 239 KTITREIADAALLR 252 (334)
Q Consensus 239 ~~i~~~~~~~~l~~ 252 (334)
+.|+.++|.++++.
T Consensus 386 ~~Vta~hV~~A~~~ 399 (637)
T PRK13765 386 DLVTAEHVLEAKKI 399 (637)
T ss_pred CCCCHHHHHHHHHH
T ss_conf 96649999999998
No 85
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.82 E-value=9.5e-20 Score=140.29 Aligned_cols=204 Identities=25% Similarity=0.368 Sum_probs=138.1
Q ss_pred CHHHH-CCHHHHHHHHHHHHHHHHHC--------CC---CCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCH
Q ss_conf 87782-39799999999999986614--------67---76707997378855778999999861898531257644334
Q gi|254780552|r 26 TLEEF-TGQVEACSNLKVFIEAAKAR--------AE---ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA 93 (334)
Q Consensus 26 ~l~dv-iGQ~~~~~~l~~~i~a~~~~--------~~---~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~~~~~~~ 93 (334)
.||++ |||+++|+.+.+++..-.+| .. .-+++|+.||.|||||.+|+.+|+-++++|....|..++.+
T Consensus 69 ~LD~yVIGQ~~AKk~lsVAvyNHykRi~~~~~~~~~vei~KsNILliGPTG~GKTlla~tLAk~l~vPF~iaDAT~lTEa 148 (411)
T PRK05342 69 HLDQYVIGQERAKKVLSVAVYNHYKRLRQNGSKSDDVELQKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEA 148 (411)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECEECCC
T ss_conf 86214028488889999999999999860213356652134538998999977889999999986999899861200126
Q ss_pred H----HHHHHH----HHH------HCCCHHHHHHHHHCCH--------------HHHHHHHHHHHCCCCCCCC---CCCC
Q ss_conf 6----766666----641------0163788875761698--------------9999999986347510025---6787
Q gi|254780552|r 94 G----DLAALL----TNL------EDRDVLFIDEIHRLSI--------------IVEEILYPAMEDFQLDLMV---GEGP 142 (334)
Q Consensus 94 ~----dl~~~~----~~~------~~~~vlfiDEihrl~~--------------~~q~~Ll~~mE~~~i~i~~---~~~~ 142 (334)
+ |+..++ .++ .++.|+|||||+.+.+ .+|.+||+.||.-.+.+-. -+.|
T Consensus 149 GYVGeDVE~ii~~Llq~Ad~dve~Ae~GIV~IDEIDKIarks~~~s~trDVSgEGVQqaLLkiiEGt~v~vp~~ggrkhp 228 (411)
T PRK05342 149 GYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHP 228 (411)
T ss_pred CCCCCCHHHHHHHHHHHCCCCHHHHHCCEEEEEEHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCEECCCCCCCCCCC
T ss_conf 74560799999999998288899883682888502345424788888777651248999999875871411888777787
Q ss_pred CCCEEECCCCCCEEEECCC--------------------------------------CCCC-----CCHHHHHCCCCEEE
Q ss_conf 6520004667400552045--------------------------------------5433-----55454420120673
Q gi|254780552|r 143 SARSVKINLSRFTLIAATT--------------------------------------RVGL-----LTNPLQDRFGIPIR 179 (334)
Q Consensus 143 ~a~~~~~~~~~f~lI~ATt--------------------------------------~~~~-----l~~~l~sR~~~~~~ 179 (334)
....+.++-.+..||++-. +|.. +.|.+.-||.++..
T Consensus 229 ~~~~~~idT~nILFI~gGAF~GL~~II~~R~~~~~iGF~~~~~~~~~~~~~~~l~~v~p~DLi~fGlIPEfiGRlPViv~ 308 (411)
T PRK05342 229 QQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKSGIGFGAEVKSKDEKDLGELLAQVEPEDLVKFGLIPEFIGRLPVVAT 308 (411)
T ss_pred CCCEEEEECCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHCCCCHHHHCCCCEEEE
T ss_conf 76516761471799911553358999986357887677887664110005678762798788873883776146640546
Q ss_pred CCCCCHHHHHHHHHH--------H---HHHC--CCHHHHHHHHHHHCCC---CCCHHHHHHHHHHH
Q ss_conf 264547999998777--------6---5412--1011111112332022---10156788777543
Q gi|254780552|r 180 LNFYEIEDLKTIVQR--------G---AKLT--GLAVTDEAACEIAMRS---RGTPRIAGRLLRRV 229 (334)
Q Consensus 180 ~~~~~~~el~~il~~--------~---~~~~--~i~~~~~al~~ia~~s---~Gd~R~AlnlLe~v 229 (334)
|++++.++|..|+.. . ...+ .+.++++|+.+||+.| +-.+|..-+++|.+
T Consensus 309 L~~L~~~~L~~ILtePkNaLikQY~~LF~~dgV~L~Ft~~AL~~IA~~A~~~~tGARgLRsIlE~i 374 (411)
T PRK05342 309 LEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDDALEAIAKKAIERKTGARGLRSILEEV 374 (411)
T ss_pred CCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 244799999999658741599999999975496799868999999999998475745779999999
No 86
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=99.82 E-value=5.4e-20 Score=141.81 Aligned_cols=138 Identities=10% Similarity=0.123 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCE-EEECCCCCCHHHHHHHHHHHCCCCCCCC--------CCCCCC------CHHHHH
Q ss_conf 7999999999999866146776707-9973788557789999998618985312--------576443------346766
Q gi|254780552|r 33 QVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVNFRST--------SGPVIA------KAGDLA 97 (334)
Q Consensus 33 Q~~~~~~l~~~i~a~~~~~~~~~h~-Lf~GPpG~GKTtlA~iiA~~l~~~~~~~--------s~~~~~------~~~dl~ 97 (334)
++|+++.|+.+++.. .++|. ||+||+|+|||++|+.+|+.++|.-... +...+. +..+.+
T Consensus 3 ~e~iv~~L~nai~~~-----klsHAYLF~G~~G~Gk~~~a~~~a~~l~~~~~~~~~~~~~~~~~~~id~~~~~i~~~~i~ 77 (303)
T PRK07132 3 DNNIIKSLDNLAKQN-----KISHSFLLKSNYNNDLDESILYFLNKFNNLQSLNLNLEELPYNIFLFDIFDEDLSKEEFL 77 (303)
T ss_pred CHHHHHHHHHHHHCC-----CCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCHHHHHHH
T ss_conf 038999999999849-----976168867899867999999999997299878887545653230413322200168899
Q ss_pred HHH-----HHH--HCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCCCCCCHHH
Q ss_conf 666-----641--0163788875761698999999998634751002567876520004667400552045543355454
Q gi|254780552|r 98 ALL-----TNL--EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPL 170 (334)
Q Consensus 98 ~~~-----~~~--~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~~~l~~~l 170 (334)
... ... ++..|++|||+|.++..++++||..+|+ |. ++..||.+||+++++++++
T Consensus 78 ~~i~~~~~~~~~~~~~Kv~IIdea~~lt~~A~NaLLKtLEE----------Pp--------~~~~fil~t~~~~~il~TI 139 (303)
T PRK07132 78 SAIEKFSFSSFVSNQKKILIIKNIEKTSNSSLNALLKTIEE----------PS--------KNTYFLLTTKNINKVIPTI 139 (303)
T ss_pred HHHHHHHHCCCCCCCEEEEEEECHHHCCHHHHHHHHHHCCC----------CC--------CCEEEEEEECCHHHCCHHH
T ss_conf 99999973665568706999816553399999999987038----------98--------6848999728824383778
Q ss_pred HHCCCCEEECCCCCHHHHHHHHHH
Q ss_conf 420120673264547999998777
Q gi|254780552|r 171 QDRFGIPIRLNFYEIEDLKTIVQR 194 (334)
Q Consensus 171 ~sR~~~~~~~~~~~~~el~~il~~ 194 (334)
+|||. ++.|++++.+++...+..
T Consensus 140 ~SRCq-~~~f~~~~~~~i~~~l~e 162 (303)
T PRK07132 140 VSRCQ-VINVKEPDQQKILAKLLS 162 (303)
T ss_pred HHCCE-EEECCCCCHHHHHHHHHH
T ss_conf 63665-663788999999999986
No 87
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.81 E-value=5.8e-19 Score=135.50 Aligned_cols=188 Identities=24% Similarity=0.322 Sum_probs=123.4
Q ss_pred HCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHC----------CCCCCCCCCCC-
Q ss_conf 5078987782397999999999999866146776707997378855778999999861----------89853125764-
Q gi|254780552|r 21 LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL----------GVNFRSTSGPV- 89 (334)
Q Consensus 21 ~lRP~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l----------~~~~~~~s~~~- 89 (334)
.-|-..+|-|||-+.=+.++-..+. .+..+ +.++.|.||||||.++.-+|... |..+..++-..
T Consensus 171 ~A~~gkldpvIGRd~EI~r~i~IL~-RR~KN----NpiLvGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~I~~LDlg~L 245 (857)
T PRK10865 171 RAEQGKLDPVIGRDEEIRRTIQVLQ-RRTKN----NPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGAL 245 (857)
T ss_pred HHHCCCCCCCCCCHHHHHHHHHHHH-CCCCC----CCEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCCEEEEEHHHH
T ss_conf 9982999988582999999999970-25789----975878999889999999999998389997881690247338878
Q ss_pred CCC---HHH----HHHHHHHH---HCCCHHHHHHHHHC--------CHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCC
Q ss_conf 433---467----66666641---01637888757616--------9899999999863475100256787652000466
Q gi|254780552|r 90 IAK---AGD----LAALLTNL---EDRDVLFIDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINL 151 (334)
Q Consensus 90 ~~~---~~d----l~~~~~~~---~~~~vlfiDEihrl--------~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~ 151 (334)
+.+ .++ +..++..+ ..+.||||||||.+ +-.+-+.|-|++-.|.+
T Consensus 246 ~AGakyRGeFEeRLk~il~ev~~~~~~iILFIDEiHtlvGaG~~~G~~DaaNlLKPaLaRGel----------------- 308 (857)
T PRK10865 246 VAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGEL----------------- 308 (857)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHHCCCC-----------------
T ss_conf 614765211799999999999847898699973435433688777753478886788737985-----------------
Q ss_pred CCCEEEECCCCCC--C---CCHHHHHCCCCEEECCCCCHHHHHHHHHHH----HHHCCCHHHHHHHHHHHCCC------C
Q ss_conf 7400552045543--3---554544201206732645479999987776----54121011111112332022------1
Q gi|254780552|r 152 SRFTLIAATTRVG--L---LTNPLQDRFGIPIRLNFYEIEDLKTIVQRG----AKLTGLAVTDEAACEIAMRS------R 216 (334)
Q Consensus 152 ~~f~lI~ATt~~~--~---l~~~l~sR~~~~~~~~~~~~~el~~il~~~----~~~~~i~~~~~al~~ia~~s------~ 216 (334)
.+|||||-.. + =.++|-.||..+ ..+.++.++-..|++.. .+..++.++++|+...+..| +
T Consensus 309 ---r~IGATT~~EYrk~iEkD~AL~RRFq~V-~V~EPs~e~ti~ILrgl~~~yE~hH~V~itdeAl~aAV~LS~RYI~dR 384 (857)
T PRK10865 309 ---HCVGATTLDEYRQYIEKDAALERRFQKV-FVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADR 384 (857)
T ss_pred ---EEEEECCHHHHHHHCCCCHHHHHHCCCC-CCCCCCHHHHHHHHHHHHHHHHHCCCCEECHHHHHHHHHHHHCCCCCC
T ss_conf ---4999458999998713458899853710-068998799999999888899873791587999999999862456666
Q ss_pred CCHHHHHHHHHHHHHHHH
Q ss_conf 015678877754333455
Q gi|254780552|r 217 GTPRIAGRLLRRVRDFAE 234 (334)
Q Consensus 217 Gd~R~AlnlLe~v~d~a~ 234 (334)
-=|-.|+.+|..+.....
T Consensus 385 ~LPDKAIDLLDeA~A~vr 402 (857)
T PRK10865 385 QLPDKAIDLIDEAASSIR 402 (857)
T ss_pred CCCHHHHHHHHHHHHHHH
T ss_conf 781489889999988887
No 88
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.81 E-value=6.5e-19 Score=135.18 Aligned_cols=187 Identities=26% Similarity=0.341 Sum_probs=122.0
Q ss_pred HCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHC----------CCCCCCCCCCC-
Q ss_conf 5078987782397999999999999866146776707997378855778999999861----------89853125764-
Q gi|254780552|r 21 LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL----------GVNFRSTSGPV- 89 (334)
Q Consensus 21 ~lRP~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l----------~~~~~~~s~~~- 89 (334)
.-|-..+|-|||-+.=+.++-..+. .+..+ +.++.|.||||||.++.-+|... |+.+..++-..
T Consensus 166 ~A~~gklDpviGRd~Ei~r~i~IL~-Rr~KN----NpiLVGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i~~LDlg~L 240 (852)
T TIGR03346 166 RAREGKLDPVIGRDEEIRRTIQVLS-RRTKN----NPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGAL 240 (852)
T ss_pred HHHCCCCCCCCCCHHHHHHHHHHHH-HHCCC----CCCEECCCCCCHHHHHHHHHHHHHCCCCCHHHHHCCCEEEEHHHH
T ss_conf 9982899977383699999999998-73248----972127999879999999999986699997885185127528877
Q ss_pred CCC---HHH----HHHHHHHH---HCCCHHHHHHHHHC--------CHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCC
Q ss_conf 433---467----66666641---01637888757616--------9899999999863475100256787652000466
Q gi|254780552|r 90 IAK---AGD----LAALLTNL---EDRDVLFIDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINL 151 (334)
Q Consensus 90 ~~~---~~d----l~~~~~~~---~~~~vlfiDEihrl--------~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~ 151 (334)
+.+ .++ +..++..+ ..+.||||||||.+ +-.+-+.|-|++-.|.+
T Consensus 241 vAGtkyRGeFEeRlk~ii~ev~~~~~~iILFIDEiHtliGaG~~~G~~DAaNlLKPaLarGel----------------- 303 (852)
T TIGR03346 241 IAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARGEL----------------- 303 (852)
T ss_pred HCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCC-----------------
T ss_conf 521530078999999999999858998799961255532688766641067774378747985-----------------
Q ss_pred CCCEEEECCCCCC--C---CCHHHHHCCCCEEECCCCCHHHHHHHHHHH----HHHCCCHHHHHHHHHHHCCCCC-----
Q ss_conf 7400552045543--3---554544201206732645479999987776----5412101111111233202210-----
Q gi|254780552|r 152 SRFTLIAATTRVG--L---LTNPLQDRFGIPIRLNFYEIEDLKTIVQRG----AKLTGLAVTDEAACEIAMRSRG----- 217 (334)
Q Consensus 152 ~~f~lI~ATt~~~--~---l~~~l~sR~~~~~~~~~~~~~el~~il~~~----~~~~~i~~~~~al~~ia~~s~G----- 217 (334)
.+|||||--. + =.++|-.||.. +..+.++.++-..|++.. .+..+|.++++|+...+..|.-
T Consensus 304 ---r~IgATT~~EYrk~iEkD~AL~RRFq~-I~V~EPs~e~t~~IL~gl~~~yE~hH~V~i~d~Ai~aav~LS~RYi~~R 379 (852)
T TIGR03346 304 ---HCIGATTLDEYRKYIEKDAALERRFQP-VFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDR 379 (852)
T ss_pred ---EEEEECCHHHHHHHHHCCHHHHHHCCC-CCCCCCCHHHHHHHHHHHHHHHHHCCCCEECHHHHHHHHHHHCCCCCCC
T ss_conf ---599827899999883226889973771-2047998689999999769999762792673999999999713466778
Q ss_pred -CHHHHHHHHHHHHHHH
Q ss_conf -1567887775433345
Q gi|254780552|r 218 -TPRIAGRLLRRVRDFA 233 (334)
Q Consensus 218 -d~R~AlnlLe~v~d~a 233 (334)
=|-.|+.+|..+....
T Consensus 380 ~LPDKAIDlLDeA~a~~ 396 (852)
T TIGR03346 380 FLPDKAIDLIDEAAARI 396 (852)
T ss_pred CCCHHHHHHHHHHHHHH
T ss_conf 89618999999999988
No 89
>pfam03215 Rad17 Rad17 cell cycle checkpoint protein.
Probab=99.81 E-value=8.8e-19 Score=134.37 Aligned_cols=201 Identities=17% Similarity=0.209 Sum_probs=129.6
Q ss_pred CCCCCHHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 44120578750789877823979999999999998661467767079973788557789999998618985312576443
Q gi|254780552|r 12 VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA 91 (334)
Q Consensus 12 ~~~~~~~~~~lRP~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~~~~~ 91 (334)
..+.+++.++..|++++|+.=+++=++.++.|++........-.=+|+.|||||||||+.+++|+++|+++.+...|+..
T Consensus 3 ~~~~epW~ekyaP~~l~ELAVHKKKV~eV~~WL~~~~~~~~~~~iLlLtGPaG~GKTTTI~lLAkeLG~ei~EW~NP~~~ 82 (490)
T pfam03215 3 ADEHELWTEKYKPRRRDELAIHKKKIAEVDHWLKAVFLESNKQLILLLTGPSGCGKSTTVKVLSKELGIEIIEWSNPEYL 82 (490)
T ss_pred CCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCEEEEECCCCCC
T ss_conf 54358641430888789985535439999999999854777731899879899889999999999759689981486545
Q ss_pred -------CHHHH---------------HHHHHH------H----HCCCHHHHHHHHHC----CHHHHHHHHHHHHCCCCC
Q ss_conf -------34676---------------666664------1----01637888757616----989999999986347510
Q gi|254780552|r 92 -------KAGDL---------------AALLTN------L----EDRDVLFIDEIHRL----SIIVEEILYPAMEDFQLD 135 (334)
Q Consensus 92 -------~~~dl---------------~~~~~~------~----~~~~vlfiDEihrl----~~~~q~~Ll~~mE~~~i~ 135 (334)
...|. ...+.. + ..+.||+|+|..-. ...-+++|+.++-....
T Consensus 83 ~~~~~~~q~~d~~g~~~~~~~S~~~~F~eFLlr~~ky~sL~~~~~~kriILIEE~Pn~~~~d~~~fr~~L~~~L~s~~~- 161 (490)
T pfam03215 83 HNPDNECQKPDFRGDCIVNSLSQMEQFREFLLRGARYGSLQGGGLKKKLILVEELPNQFYSDAEKFREVIREVLQSIWH- 161 (490)
T ss_pred CCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCC-
T ss_conf 6775022101212345766663777767887622335654457887359999658874423669999999999970899-
Q ss_pred CCCCCCCCCCEEECCCCCCEEEECCC-------C-------CCCC-CHHHHHCCC-CEEECCCCCHHHHHHHHHHHHHHC
Q ss_conf 02567876520004667400552045-------5-------4335-545442012-067326454799999877765412
Q gi|254780552|r 136 LMVGEGPSARSVKINLSRFTLIAATT-------R-------VGLL-TNPLQDRFG-IPIRLNFYEIEDLKTIVQRGAKLT 199 (334)
Q Consensus 136 i~~~~~~~a~~~~~~~~~f~lI~ATt-------~-------~~~l-~~~l~sR~~-~~~~~~~~~~~el~~il~~~~~~~ 199 (334)
+|.++|..-| . .+.| ++-++.-++ -++.|++..+.-+.+.+.+++.++
T Consensus 162 ----------------~PlV~IiSEt~s~~g~~~~~~~~~ta~rLlg~eIl~hp~i~~I~FNpIApT~M~KaL~~I~~kE 225 (490)
T pfam03215 162 ----------------LPLIFCLTECNSLEGDNNQDRFGIDAETIMTKDILIMPRIDTITFNPIAPTFMKKALVRISVQE 225 (490)
T ss_pred ----------------CCEEEEEEECCCCCCCCCCCCCCCHHHHHCCHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHH
T ss_conf ----------------9879999704666677643323210786359888708896369868887889999999999985
Q ss_pred CC---HHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 10---1111111233202210156788777543
Q gi|254780552|r 200 GL---AVTDEAACEIAMRSRGTPRIAGRLLRRV 229 (334)
Q Consensus 200 ~i---~~~~~al~~ia~~s~Gd~R~AlnlLe~v 229 (334)
+. ....++++.|++.|.||.|.|+|-||-.
T Consensus 226 ~~~~~~~~~~~le~Ia~~S~GDIRsAInsLQF~ 258 (490)
T pfam03215 226 GKLKSPKSDSKLEVICQEAGGDLRSAINSLQFS 258 (490)
T ss_pred CCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 765567520389999986487299999999986
No 90
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.80 E-value=5.7e-19 Score=135.50 Aligned_cols=206 Identities=23% Similarity=0.310 Sum_probs=122.6
Q ss_pred HCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHC----------CCCCCCCCC-CC
Q ss_conf 5078987782397999999999999866146776707997378855778999999861----------898531257-64
Q gi|254780552|r 21 LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL----------GVNFRSTSG-PV 89 (334)
Q Consensus 21 ~lRP~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l----------~~~~~~~s~-~~ 89 (334)
.-|-..+|-+||-++=+.++-..+. .+.++ +.++.|.||||||.++.-+|... +..+..++- ..
T Consensus 179 ~Ar~gklDPviGR~~Ei~r~i~iL~-Rr~KN----NpiLvGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i~~Ldl~~L 253 (758)
T PRK11034 179 LARVGGIDPLIGREKELERAIQVLC-RRRKN----NPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL 253 (758)
T ss_pred HHHCCCCCCCCCCHHHHHHHHHHHH-HHCCC----CCEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHH
T ss_conf 9982899987384899999999997-63258----960216999869999999999997389976558988998458778
Q ss_pred CCC---HHHH----HHHHHHH--HCCCHHHHHHHHHCC---------HHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCC
Q ss_conf 433---4676----6666641--016378887576169---------899999999863475100256787652000466
Q gi|254780552|r 90 IAK---AGDL----AALLTNL--EDRDVLFIDEIHRLS---------IIVEEILYPAMEDFQLDLMVGEGPSARSVKINL 151 (334)
Q Consensus 90 ~~~---~~dl----~~~~~~~--~~~~vlfiDEihrl~---------~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~ 151 (334)
+.+ .+|. ..++..+ ..+.||||||||.+- -.+-+.|-|++..|.+
T Consensus 254 iAGtkyRGefEeRlk~vi~e~~~~~~~ILFIDEiH~ivGaG~~~gg~~DaaNlLKP~LarG~l----------------- 316 (758)
T PRK11034 254 LAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKI----------------- 316 (758)
T ss_pred HCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHCCCCCCCCCCCCHHHHHHHHHHCCCC-----------------
T ss_conf 616864154999999999999857985999804344226887677764678874578746972-----------------
Q ss_pred CCCEEEECCCCCC--C-C--CHHHHHCCCCEEECCCCCHHHHHHHHHHHH----HHCCCHHHHHHHHHHHCCC------C
Q ss_conf 7400552045543--3-5--545442012067326454799999877765----4121011111112332022------1
Q gi|254780552|r 152 SRFTLIAATTRVG--L-L--TNPLQDRFGIPIRLNFYEIEDLKTIVQRGA----KLTGLAVTDEAACEIAMRS------R 216 (334)
Q Consensus 152 ~~f~lI~ATt~~~--~-l--~~~l~sR~~~~~~~~~~~~~el~~il~~~~----~~~~i~~~~~al~~ia~~s------~ 216 (334)
.+|||||... + + .++|..||.. ...+.++.++-..|++... +..++.++++|+...+..| +
T Consensus 317 ---~~IgaTT~~EYrk~iekD~AL~RRFq~-V~V~EPs~e~t~~IL~gl~~~yE~~H~v~~~d~al~~av~Ls~rYi~dr 392 (758)
T PRK11034 317 ---RVIGSTTYQEFSNIFEKDRALARRFQK-IDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDR 392 (758)
T ss_pred ---EEEEECCHHHHHHCCCCCHHHHHCCCE-EECCCCCHHHHHHHHHHHHHHHHHCCCCEECCHHHHHHHHHHHHHHCCC
T ss_conf ---399943779987503214788842826-5318999899999999899987323695774389999999997650268
Q ss_pred CCHHHHHHHHHHHHHHHH----HHCCCCCCHHHHHHHHHH
Q ss_conf 015678877754333455----415886427787876542
Q gi|254780552|r 217 GTPRIAGRLLRRVRDFAE----VAHAKTITREIADAALLR 252 (334)
Q Consensus 217 Gd~R~AlnlLe~v~d~a~----~~~~~~i~~~~~~~~l~~ 252 (334)
-=|..|+.+|..+...+. ....+.++.+.+...+..
T Consensus 393 ~lPDKAIdllDea~a~~~l~~~~~~~~~v~~~di~~vv~~ 432 (758)
T PRK11034 393 HLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVAR 432 (758)
T ss_pred CCCHHHHHHHHHHHHHHHCCHHHHHCCCCCHHHHHHHHHH
T ss_conf 8961999999999888751345663165899999999987
No 91
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=99.80 E-value=6.5e-19 Score=135.17 Aligned_cols=165 Identities=22% Similarity=0.321 Sum_probs=116.3
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCC-EEEECCCCCCHHHHHHHHHHHCCCCCC----------CC-CC--CCC-------C
Q ss_conf 799999999999986614677670-799737885577899999986189853----------12-57--644-------3
Q gi|254780552|r 33 QVEACSNLKVFIEAAKARAEALDH-VLFVGPPGLGKTTLAQVVARELGVNFR----------ST-SG--PVI-------A 91 (334)
Q Consensus 33 Q~~~~~~l~~~i~a~~~~~~~~~h-~Lf~GPpG~GKTtlA~iiA~~l~~~~~----------~~-s~--~~~-------~ 91 (334)
|+.+...|..+++.. .++| +||+||+|+||+++|+.+|+.+-|+-. .+ ++ |.+ .
T Consensus 9 q~~~~~~L~~~i~~~-----rl~HA~Lf~Gp~G~GK~~~A~~~A~~llc~~~~~~~~~~~~~~i~~g~HPD~~~i~~~~~ 83 (319)
T PRK08769 9 QQRAFDQTVAALDAG-----RLGHGLLICGPEGLGKRAVALALAEHVLASGPDPALAQRTRQLIAAGTHPDLQLVSFIPN 83 (319)
T ss_pred CHHHHHHHHHHHHCC-----CCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCC
T ss_conf 689999999999769-----942068758999878999999999998379979765433889996689989687753444
Q ss_pred ----------CHHHHHHHHHHH------HCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCE
Q ss_conf ----------346766666641------0163788875761698999999998634751002567876520004667400
Q gi|254780552|r 92 ----------KAGDLAALLTNL------EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFT 155 (334)
Q Consensus 92 ----------~~~dl~~~~~~~------~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~ 155 (334)
++.+++.+...+ +...|++||++|+||...+++||..+|+ |. +..+
T Consensus 84 ~~~~k~k~~I~IdqiR~l~~~~~~~p~~g~~KV~IId~Ad~mn~~AaNalLK~LEE----------Pp--------~~~~ 145 (319)
T PRK08769 84 RTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRSACNALLKTLEE----------PS--------PGRY 145 (319)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHCCHHHHHHHHHHHCC----------CC--------CCEE
T ss_conf 45431123486999999999961372027956999806675289999999998227----------99--------8848
Q ss_pred EEECCCCCCCCCHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 552045543355454420120673264547999998777654121011111112332022101567887775
Q gi|254780552|r 156 LIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227 (334)
Q Consensus 156 lI~ATt~~~~l~~~l~sR~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~Gd~R~AlnlLe 227 (334)
||..|+++..|+++++|||. .+.|.+.+.++...-+... + +++......+..++|.|..|+++++
T Consensus 146 ~iL~~~~~~~ll~TI~SRCq-~~~~~~p~~~~~~~~L~~~----g--~~~~~a~~~l~~a~g~p~~A~~~~~ 210 (319)
T PRK08769 146 LWLISAQPARLPATIRSRCQ-RLEFKLPPAHEALAWLLSQ----G--VSERAAQEALDAARGHPGLAAQWLR 210 (319)
T ss_pred EEEEECCHHHCCHHHHHCCE-EECCCCCCHHHHHHHHHHC----C--CCHHHHHHHHHHHCCCHHHHHHHHC
T ss_conf 99986993658247764850-1118996999999999975----9--9918999999982799689999843
No 92
>KOG0738 consensus
Probab=99.80 E-value=1e-17 Score=127.79 Aligned_cols=178 Identities=28% Similarity=0.378 Sum_probs=113.2
Q ss_pred CHHHHCCHHHHHHHHHHHHHH-------HHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCH--HH-
Q ss_conf 877823979999999999998-------66146776707997378855778999999861898531257644334--67-
Q gi|254780552|r 26 TLEEFTGQVEACSNLKVFIEA-------AKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--GD- 95 (334)
Q Consensus 26 ~l~dviGQ~~~~~~l~~~i~a-------~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~~~~~~~--~d- 95 (334)
.|+||.|.+++|+.|+.++-. .+.-..+-..+|++||||||||.||+++|.|.++.|..+|++.+... +|
T Consensus 210 kW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltSKwRGeS 289 (491)
T KOG0738 210 KWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSKWRGES 289 (491)
T ss_pred CHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCEEEEECHHHHHHHHCCCH
T ss_conf 76763164999999998875444248887424465300055679997478999999886167278740245655532526
Q ss_pred --HHHH-HH--HHHCCCHHHHHHHHHCC------------HHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEE
Q ss_conf --6666-66--41016378887576169------------8999999998634751002567876520004667400552
Q gi|254780552|r 96 --LAAL-LT--NLEDRDVLFIDEIHRLS------------IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIA 158 (334)
Q Consensus 96 --l~~~-~~--~~~~~~vlfiDEihrl~------------~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ 158 (334)
++.+ |. .+--.+++|||||+.+. +....-||--|+. +-+...+++++ .+.+
T Consensus 290 EKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG-----~~~t~e~~k~V-------mVLA 357 (491)
T KOG0738 290 EKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDG-----VQGTLENSKVV-------MVLA 357 (491)
T ss_pred HHHHHHHHHHHHHHCCCEEEHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHC-----CCCCCCCCEEE-------EEEE
T ss_conf 99999999999874885353356778872579865036788888899998633-----44444565169-------9984
Q ss_pred CCCCCCCCCHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHH-HHHHHCCCCC
Q ss_conf 0455433554544201206732645479999987776541210111111-1233202210
Q gi|254780552|r 159 ATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEA-ACEIAMRSRG 217 (334)
Q Consensus 159 ATt~~~~l~~~l~sR~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~a-l~~ia~~s~G 217 (334)
|||-|..|..+||-||--.+....++.+.-...++.... .+..+++. +..||+.+.|
T Consensus 358 ATN~PWdiDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~--~~~~~~~~~~~~lae~~eG 415 (491)
T KOG0738 358 ATNFPWDIDEALRRRLEKRIYIPLPDAEARSALIKILLR--SVELDDPVNLEDLAERSEG 415 (491)
T ss_pred CCCCCCCHHHHHHHHHHHHEEEECCCHHHHHHHHHHHHC--CCCCCCCCCHHHHHHHHCC
T ss_conf 368982057999998763033128787899999997623--5668887569999998568
No 93
>pfam00004 AAA ATPase family associated with various cellular activities (AAA). AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Probab=99.80 E-value=9.9e-20 Score=140.17 Aligned_cols=110 Identities=39% Similarity=0.550 Sum_probs=83.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC------CHHHHHHHHHHHH--CCCHHHHHHHHHCCHH--------
Q ss_conf 79973788557789999998618985312576443------3467666666410--1637888757616989--------
Q gi|254780552|r 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA------KAGDLAALLTNLE--DRDVLFIDEIHRLSII-------- 120 (334)
Q Consensus 57 ~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~~~~~------~~~dl~~~~~~~~--~~~vlfiDEihrl~~~-------- 120 (334)
+|||||||||||++|+.+|++++.++..++++.+. ....+..++..++ .++||||||+|.+.+.
T Consensus 1 iLl~GppGtGKT~~a~~la~~~~~~~~~v~~~~~~~~~~g~~~~~i~~~f~~a~~~~p~Il~iDe~d~l~~~~~~~~~~~ 80 (131)
T pfam00004 1 LLLYGPPGTGKTTLAKAVAKELGAPFIEISGSELVSKYVGESEKRLRELFEAAKKLAPCVIFIDEIDALAGSRGSGGDSE 80 (131)
T ss_pred CEEECCCCCCHHHHHHHHHHHHCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHHHHCCCCCCCCCC
T ss_conf 98789999999999999999978985332420122233450688899999999974991898311677751678888875
Q ss_pred ---HHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCCCCCCHHHH-HCCCCEEECC
Q ss_conf ---999999986347510025678765200046674005520455433554544-2012067326
Q gi|254780552|r 121 ---VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ-DRFGIPIRLN 181 (334)
Q Consensus 121 ---~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~~~l~~~l~-sR~~~~~~~~ 181 (334)
.+..|+..|+.... +.+++.+|++||++..++++++ +||...+.|.
T Consensus 81 ~~~~~~~ll~~ld~~~~---------------~~~~v~~I~tTN~~~~ld~al~r~Rfd~~i~~p 130 (131)
T pfam00004 81 SRRVVNQLLTELDGFTS---------------SLSKVIVIAATNRPDKLDPALLRGRFDRIIEFP 130 (131)
T ss_pred CHHHHHHHHHHHHHCCC---------------CCCCEEEEEECCCHHHCCHHHHCCCCEEEEEEC
T ss_conf 13268789999850224---------------688769999759904499779628332899806
No 94
>pfam07726 AAA_3 ATPase family associated with various cellular activities (AAA). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=99.79 E-value=9.9e-20 Score=140.18 Aligned_cols=113 Identities=31% Similarity=0.435 Sum_probs=83.7
Q ss_pred CEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHH--HH------HHC----CCHHHHHHHHHCCHHHHH
Q ss_conf 079973788557789999998618985312576443346766666--64------101----637888757616989999
Q gi|254780552|r 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALL--TN------LED----RDVLFIDEIHRLSIIVEE 123 (334)
Q Consensus 56 h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~~~~~~~~dl~~~~--~~------~~~----~~vlfiDEihrl~~~~q~ 123 (334)
|+|++||||||||++|+.+|+.++.+|..++.+.-..+.|+.+.. .. ..+ +.|+|+|||++.+..+|+
T Consensus 1 hVLL~GppG~GKT~l~~~lA~~~~~~~~~i~~~~~~~~~Dl~G~~~~~~~~~~~~~~~G~l~~~vl~lDEin~a~~~v~~ 80 (131)
T pfam07726 1 HVLLEGVPGLAKTLLARTLARSLGLDFRRIQFTPDLLPSDITGTEVYDQKTREFEFRPGPIFANVLLADEINRAPPKTQS 80 (131)
T ss_pred CEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCEEECCCCCEEEEECCCCCCCCEEEEHHHCCCHHHHH
T ss_conf 98789899876999999999995998168883377670003684542378740898457310370564012039989999
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCC-----CCCCHHHHHCCC
Q ss_conf 9999863475100256787652000466740055204554-----335545442012
Q gi|254780552|r 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV-----GLLTNPLQDRFG 175 (334)
Q Consensus 124 ~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~-----~~l~~~l~sR~~ 175 (334)
+||++|+++++.+ .+ .+++.+ +.|.+|+|.|.. ..++++++|||-
T Consensus 81 ~Ll~~l~er~v~~-~g-----~~~~~p-~~f~viAt~NP~e~~G~~~L~~al~dRF~ 130 (131)
T pfam07726 81 ALLEAMQERQVTI-GG-----ETHPLP-EPFFVLATQNPIEQEGTYPLPEAQLDRFL 130 (131)
T ss_pred HHHHHHHCEEEEE-CC-----EEEECC-CCEEEEECCCCCCCCCCEECCHHHHCCCC
T ss_conf 9997632649977-99-----885279-98499971698755576449988965615
No 95
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.79 E-value=2e-18 Score=132.17 Aligned_cols=202 Identities=20% Similarity=0.208 Sum_probs=139.7
Q ss_pred CCHHHHCC--HHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCC---CCCCCCCCCCCHHHHHHH
Q ss_conf 98778239--7999999999999866146776707997378855778999999861898---531257644334676666
Q gi|254780552|r 25 RTLEEFTG--QVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN---FRSTSGPVIAKAGDLAAL 99 (334)
Q Consensus 25 ~~l~dviG--Q~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~---~~~~s~~~~~~~~dl~~~ 99 (334)
.+|++||. ...+...++.+.+. .+ ...+.+|||+|+|||.|++++++++... ...+++..+. .....+
T Consensus 12 ~tfdnFi~~~N~~~~~~l~~~~~~---~~--~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~yl~~~~~~--~~~~~~ 84 (226)
T TIGR03420 12 PTFDNFYAGGNAELLAALRQLAAG---KG--DRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELA--QADPEV 84 (226)
T ss_pred CCHHCCCCCCHHHHHHHHHHHHHC---CC--CCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEECHHHHH--HHHHHH
T ss_conf 763123658679999999987646---68--88699989999988999999999986269957995299987--753999
Q ss_pred HHHHHCCCHHHHHHHHHCCH--HHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCCCCC---CHHHHHCC
Q ss_conf 66410163788875761698--99999999863475100256787652000466740055204554335---54544201
Q gi|254780552|r 100 LTNLEDRDVLFIDEIHRLSI--IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL---TNPLQDRF 174 (334)
Q Consensus 100 ~~~~~~~~vlfiDEihrl~~--~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~~~l---~~~l~sR~ 174 (334)
+..+...++++||.||.+.. .-|+.|+.......- -....++.+++.|..+ .+-|+|||
T Consensus 85 l~~l~~~d~l~iDDi~~i~~~~~~e~~lF~l~N~~~~----------------~~~~ilits~~~p~~l~~~l~dL~SRl 148 (226)
T TIGR03420 85 LEGLEQADLVCLDDVEAIAGQPEWQEALFHLYNRVRE----------------AGGRLLIAGRAAPAQLPLRLPDLRTRL 148 (226)
T ss_pred HHHCCCCCEEEEECHHHHCCCHHHHHHHHHHHHHHHH----------------HCCEEEEECCCCHHHCCCCHHHHHHHH
T ss_conf 9727448999996633343783789999999999986----------------528289867888232032017799999
Q ss_pred --CCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf --2067326454799999877765412101111111233202210156788777543334554158864277878765
Q gi|254780552|r 175 --GIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250 (334)
Q Consensus 175 --~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~Gd~R~AlnlLe~v~d~a~~~~~~~i~~~~~~~~l 250 (334)
+.+..+++++.+++..|+++.+...+++++++++.+|+++...|.|...++++.+-.+ .......||...++++|
T Consensus 149 ~~~~~~~I~~pdd~~~~~iL~k~~~~r~i~i~~~vi~yl~~r~~R~~~~l~~~l~~Ld~~-sl~~kr~ITi~l~kevL 225 (226)
T TIGR03420 149 AWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHGSRDMGSLMALLDALDRA-SLAAKRKITIPFVKEVL 225 (226)
T ss_pred HCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHH-HHHHCCCCCHHHHHHHH
T ss_conf 688568527999999999999999985998899999999986379899999999999999-99808999999999984
No 96
>KOG0737 consensus
Probab=99.79 E-value=8.3e-19 Score=134.54 Aligned_cols=188 Identities=26% Similarity=0.326 Sum_probs=128.7
Q ss_pred CHHHHCCHHHHHHHHHHHHHHHHHCCC---------CCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCH--H
Q ss_conf 877823979999999999998661467---------76707997378855778999999861898531257644334--6
Q gi|254780552|r 26 TLEEFTGQVEACSNLKVFIEAAKARAE---------ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA--G 94 (334)
Q Consensus 26 ~l~dviGQ~~~~~~l~~~i~a~~~~~~---------~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~~~~~~~--~ 94 (334)
+|+|+-|.++++..++..+---..+.+ +...+|+|||||||||.+|+.+|++.+..|+.++.+.+... +
T Consensus 90 ~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~KWfg 169 (386)
T KOG0737 90 SFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSKWFG 169 (386)
T ss_pred EHHHCCCHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCHHHHH
T ss_conf 02413352899999998775201246664145314686430511899821889999999872797100013655326677
Q ss_pred H----HHHHHHHHH--CCCHHHHHHHHHCCHHHH----HHH------HHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEE
Q ss_conf 7----666666410--163788875761698999----999------998634751002567876520004667400552
Q gi|254780552|r 95 D----LAALLTNLE--DRDVLFIDEIHRLSIIVE----EIL------YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIA 158 (334)
Q Consensus 95 d----l~~~~~~~~--~~~vlfiDEihrl~~~~q----~~L------l~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ 158 (334)
+ +.++++-+. .++|+|||||+.|-...+ |+- +..+=||.- .+.+ ..+.+.|
T Consensus 170 E~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~-----s~~~--------~rVlVlg 236 (386)
T KOG0737 170 EAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLS-----SKDS--------ERVLVLG 236 (386)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCC-----CCCC--------CEEEEEE
T ss_conf 78889999982065348615656658889864046427999999999999861646-----7887--------1599970
Q ss_pred CCCCCCCCCHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q ss_conf 04554335545442012067326454799999877765412101111111233202210-1567887775
Q gi|254780552|r 159 ATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRG-TPRIAGRLLR 227 (334)
Q Consensus 159 ATt~~~~l~~~l~sR~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~G-d~R~AlnlLe 227 (334)
|||+|.-+..++.+|+...++..-++.+.-.+|++-+.+.++++ ++=-+..||....| +.++..+++.
T Consensus 237 ATNRP~DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e~~e-~~vD~~~iA~~t~GySGSDLkelC~ 305 (386)
T KOG0737 237 ATNRPFDLDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKEKLE-DDVDLDEIAQMTEGYSGSDLKELCR 305 (386)
T ss_pred CCCCCCCHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHCCCCCC-CCCCHHHHHHHCCCCCHHHHHHHHH
T ss_conf 79998437899998476436537984444999999994243468-7769888887608986778999999
No 97
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.79 E-value=1.5e-18 Score=132.91 Aligned_cols=182 Identities=25% Similarity=0.316 Sum_probs=97.5
Q ss_pred CCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHC----------CCCCCCCCCC-CCC
Q ss_conf 78987782397999999999999866146776707997378855778999999861----------8985312576-443
Q gi|254780552|r 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL----------GVNFRSTSGP-VIA 91 (334)
Q Consensus 23 RP~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l----------~~~~~~~s~~-~~~ 91 (334)
|-..+|-|||-+.=+.++-..+ +.+.++ +.+|.|.||||||.++.-+|... |+.+.+++-. .+.
T Consensus 174 ~~GklDpvIGRd~EI~r~i~IL-~RR~KN----NpiLvGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i~sLDl~~L~A 248 (823)
T CHL00095 174 YEGNLDPVIGRDKEIERVIQIL-GRRTKN----NPILIGEPGVGKTAIAEGLAQRIANRDVPDILEDKLVLTLDIGLLLA 248 (823)
T ss_pred HHCCCCCCCCCHHHHHHHHHHH-HHHCCC----CCEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCCEEEEEHHHHHH
T ss_conf 8389998759569999999999-773248----85023799987999999999976088998687599368842887753
Q ss_pred C---HHH----HHHHHHHH--HCCCHHHHHHHHHC--------CHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCC
Q ss_conf 3---467----66666641--01637888757616--------9899999999863475100256787652000466740
Q gi|254780552|r 92 K---AGD----LAALLTNL--EDRDVLFIDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRF 154 (334)
Q Consensus 92 ~---~~d----l~~~~~~~--~~~~vlfiDEihrl--------~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f 154 (334)
+ .+| +..++..+ ..+.||||||||.+ +-.+-+.|-|++-.|.+
T Consensus 249 GtkyRGeFEeRlk~il~ei~~~~~iILFIDEiHtlvGaG~~~g~~DaaNlLKPaLarGel-------------------- 308 (823)
T CHL00095 249 GTKYRGEFEERIKKIMDEIKKANNIILVIDEIHTLIGAGAAEGAIDAANILKPALARGKL-------------------- 308 (823)
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCEEEEECCHHHHCCCCCCCCCHHHHHHHHHHHHCCCC--------------------
T ss_conf 342226799999999999985798699973516532889766643178876578648986--------------------
Q ss_pred EEEECCCCCC--C---CCHHHHHCCCCEEECCCCCHHHHHHHHHHHH----HHCCCHHHHHHHHHHHCCC------CCCH
Q ss_conf 0552045543--3---5545442012067326454799999877765----4121011111112332022------1015
Q gi|254780552|r 155 TLIAATTRVG--L---LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGA----KLTGLAVTDEAACEIAMRS------RGTP 219 (334)
Q Consensus 155 ~lI~ATt~~~--~---l~~~l~sR~~~~~~~~~~~~~el~~il~~~~----~~~~i~~~~~al~~ia~~s------~Gd~ 219 (334)
.+|||||... + -.++|..||..+ ..+.++.++-..|++... +..++.++++|+...+..| +-=|
T Consensus 309 ~~IGATT~~EYrk~iEkD~AL~RRFq~V-~V~EPs~e~t~~IL~gl~~~yE~~H~V~i~d~Ai~aav~LS~RYi~dr~LP 387 (823)
T CHL00095 309 QCIGATTLEEYRKHIEKDPALERRFQPV-YVGEPSVEETIEILLGLRDRYEKHHNLSISDKALEAAAKLSDQYIKDRFLP 387 (823)
T ss_pred EEEEECCHHHHHHHHHCCHHHHHHCCCC-CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCC
T ss_conf 6997078899999853058899626841-028998799999999999999875088504789999999877640377782
Q ss_pred HHHHHHHHHHH
Q ss_conf 67887775433
Q gi|254780552|r 220 RIAGRLLRRVR 230 (334)
Q Consensus 220 R~AlnlLe~v~ 230 (334)
-.|+.+|..+.
T Consensus 388 DKAIDllDeA~ 398 (823)
T CHL00095 388 DKAIDLLDEAG 398 (823)
T ss_pred HHHHHHHHHHH
T ss_conf 17888899998
No 98
>TIGR00382 clpX ATP-dependent Clp protease, ATP-binding subunit ClpX; InterPro: IPR004487 ClpX is a member of the HSP (heat-shock protein) 100 family. Gel filtration and electron microscopy showed that ClpX subunits associate to form a six-membered ring that is stabilized by binding of ATP or nonhydrolyzable analogs of ATP . It functions as an ATP-depedent molecular chaperone and is the regulatory subunit of the ClpXP protease . ClpXP is involved in DNA damage repair, stationary-phase gene expression, and ssrA-mediated protein quality control. To date more than 50 proteins include transcription factors, metabolic enzymes, and proteins involved in the starvation and oxidative stress responses have been identified as substrates . The N-terminal domain of ClpX is a C4-type zinc binding domain (ZBD) involved in substrate recognition. ZBD forms a very stable dimer that is essential for promoting the degradation of some typical ClpXP substrates such as lO and MuA . ; GO: 0005515 protein binding, 0005524 ATP binding, 0016887 ATPase activity, 0015031 protein transport.
Probab=99.79 E-value=9.2e-20 Score=140.36 Aligned_cols=189 Identities=28% Similarity=0.425 Sum_probs=131.9
Q ss_pred CHHHH-CCHHHHHHHHHHHHHHHHHC-----------C-C-------------CCCCEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 87782-39799999999999986614-----------6-7-------------767079973788557789999998618
Q gi|254780552|r 26 TLEEF-TGQVEACSNLKVFIEAAKAR-----------A-E-------------ALDHVLFVGPPGLGKTTLAQVVARELG 79 (334)
Q Consensus 26 ~l~dv-iGQ~~~~~~l~~~i~a~~~~-----------~-~-------------~~~h~Lf~GPpG~GKTtlA~iiA~~l~ 79 (334)
-||+| |||+.+|+.|.+++-+--+| + . .-+++||.||.|.|||.||..+|+.|+
T Consensus 98 ~LD~YVIGQe~AKKVLsVAVYNHYKRl~~~~~n~~~d~~D~nvelehleeVEL~KSNILLiGPTGSGKTLLAqTLA~~L~ 177 (452)
T TIGR00382 98 HLDEYVIGQEQAKKVLSVAVYNHYKRLNLKEKNKKSDNGDSNVELEHLEEVELSKSNILLIGPTGSGKTLLAQTLARILN 177 (452)
T ss_pred HHCCCCCCCCCCCEEEEEEEHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 72136123101052543241124666532430455588400023544444333006624546888526899999998738
Q ss_pred CCCCCCCCCCCCCHH----HHHHHHHHH----------HCCCHHHHHHHHHCCHH--------------HHHHHHHHHHC
Q ss_conf 985312576443346----766666641----------01637888757616989--------------99999998634
Q gi|254780552|r 80 VNFRSTSGPVIAKAG----DLAALLTNL----------EDRDVLFIDEIHRLSII--------------VEEILYPAMED 131 (334)
Q Consensus 80 ~~~~~~s~~~~~~~~----dl~~~~~~~----------~~~~vlfiDEihrl~~~--------------~q~~Ll~~mE~ 131 (334)
+||-...|+.++.+| |+.+++..+ .++.|+|||||+..+|. +|.|||..+|-
T Consensus 178 VPfAiADATtLTEAGYVGEDVENIL~~Llq~ad~DV~kA~kGIiYIDEIDKIaRkSEN~SITRDVSGEGVQQALLKi~EG 257 (452)
T TIGR00382 178 VPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEG 257 (452)
T ss_pred CCEEECCHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHCCCEEEEECCCCHHHHCCCCEEEEEECCCHHHHHHHHHHHC
T ss_conf 87421111102006642422889999998741455245278508984223101215778011221755499999987603
Q ss_pred CCCCCCC---C-CCCCCCEEECCCCCCEEEECCC----------------------------------------CCCC--
Q ss_conf 7510025---6-7876520004667400552045----------------------------------------5433--
Q gi|254780552|r 132 FQLDLMV---G-EGPSARSVKINLSRFTLIAATT----------------------------------------RVGL-- 165 (334)
Q Consensus 132 ~~i~i~~---~-~~~~a~~~~~~~~~f~lI~ATt----------------------------------------~~~~-- 165 (334)
.|.-+- | +-|.-..+.++-+...||.+-- +++-
T Consensus 258 -TvA~vPPqGGRKHP~~~~iqiDTs~ILFICGGAF~GL~~iI~~R~~~~~~iGF~~~~~~~~~~~~~~~~L~~v~~~DL~ 336 (452)
T TIGR00382 258 -TVANVPPQGGRKHPQQEFIQIDTSNILFICGGAFVGLEKIIKKRTEKKSSIGFGAEVKKKSKEKSEEELLRQVEPEDLV 336 (452)
T ss_pred -CEEEECCCCCCCCCCCCEEEECCCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHH
T ss_conf -2343175448868865768864764001105434448999988745553335455210045787899999751711122
Q ss_pred ---CCHHHHHCCCCEEECCCCCHHHHHHHHHH--------HHH---HC--CCHHHHHHHHHHHCCC
Q ss_conf ---55454420120673264547999998777--------654---12--1011111112332022
Q gi|254780552|r 166 ---LTNPLQDRFGIPIRLNFYEIEDLKTIVQR--------GAK---LT--GLAVTDEAACEIAMRS 215 (334)
Q Consensus 166 ---l~~~l~sR~~~~~~~~~~~~~el~~il~~--------~~~---~~--~i~~~~~al~~ia~~s 215 (334)
|.|-+.-|..++..|+.++.+.|.+||.+ ..+ .. .+.+++||+..||..|
T Consensus 337 kFGLIPEfIGRLPV~a~L~~L~~eAL~~IL~~PkNAlvKQY~~lf~ld~VeL~F~~eAl~~IA~~A 402 (452)
T TIGR00382 337 KFGLIPEFIGRLPVIATLEKLDEEALIAILTKPKNALVKQYQALFKLDNVELEFEEEALKAIAKKA 402 (452)
T ss_pred HHCCCCCCCCCCCCEECCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
T ss_conf 105551011053402027878878999985254444889999971645611345588899999999
No 99
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.79 E-value=2.2e-18 Score=131.95 Aligned_cols=152 Identities=21% Similarity=0.273 Sum_probs=109.6
Q ss_pred CCCC-EEEECCCCCCHHHHHHHHHHHCCCCC-------------CCCC---CCC---C--------CCHHHHHHHHHHH-
Q ss_conf 7670-79973788557789999998618985-------------3125---764---4--------3346766666641-
Q gi|254780552|r 53 ALDH-VLFVGPPGLGKTTLAQVVARELGVNF-------------RSTS---GPV---I--------AKAGDLAALLTNL- 103 (334)
Q Consensus 53 ~~~h-~Lf~GPpG~GKTtlA~iiA~~l~~~~-------------~~~s---~~~---~--------~~~~dl~~~~~~~- 103 (334)
.++| +||+||+|+||+++|+.+|+.+.|.- ..+. -|. + -++.+++.+...+
T Consensus 20 rl~HA~Lf~G~~G~GK~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~~~HPD~~~i~pe~~~~~I~IdqIR~l~~~~~ 99 (328)
T PRK05707 20 RHAHAYLLHGPAGIGKRALAERLAAFLLCEAPQGGGACGSCKGCQLLAAGSHPDNFVLEPEEADKPIKVDQVRELVSFVV 99 (328)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHH
T ss_conf 82204644799986799999999999848999998999888899998758999879984266677697999999999983
Q ss_pred -----HCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCCCCCCHHHHHCCCCEE
Q ss_conf -----016378887576169899999999863475100256787652000466740055204554335545442012067
Q gi|254780552|r 104 -----EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178 (334)
Q Consensus 104 -----~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~~~l~~~l~sR~~~~~ 178 (334)
+.+.|++||++|++|..++++||..+|+ |. +...||..|+++.+|.++++|||. .+
T Consensus 100 ~~~~~g~~KV~iI~~Ae~m~~~AaNALLKtLEE----------Pp--------~~t~fiL~t~~~~~lLpTI~SRCq-~~ 160 (328)
T PRK05707 100 QTAQLGGRKVVLIEPAEAMNRNAANALLKSLEE----------PS--------GQTVLLLISHQPSRLLPTIKSRCQ-QL 160 (328)
T ss_pred HCCCCCCCEEEEEEHHHHHCHHHHHHHHHHHHC----------CC--------CCEEEEEEECCHHHCHHHHHHCCE-EE
T ss_conf 176678957999502877389999999998507----------89--------875999860993448258874141-33
Q ss_pred ECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 3264547999998777654121011111112332022101567887775
Q gi|254780552|r 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227 (334)
Q Consensus 179 ~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~Gd~R~AlnlLe 227 (334)
.|...+.+++..-+.... .+.+.+....++..++|.+..|+.+.+
T Consensus 161 ~~~~p~~e~~~~~L~~~~----~~~~~~~a~~ll~la~G~p~~A~~l~~ 205 (328)
T PRK05707 161 ACPLPSNEPSLQWLQQAL----PESDAEERIELLTLAAGSPLRALQLHA 205 (328)
T ss_pred ECCCCCHHHHHHHHHHHC----CCCCHHHHHHHHHHCCCCHHHHHHHHC
T ss_conf 489989999999999755----655789999999974999999998748
No 100
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=99.77 E-value=5.1e-18 Score=129.68 Aligned_cols=151 Identities=17% Similarity=0.200 Sum_probs=108.3
Q ss_pred CCCE-EEECCCCCCHHHHHHHHHHHCCCCC-------C------CCC-C--CCC-------C---CHHHHHHHHHHH---
Q ss_conf 6707-9973788557789999998618985-------3------125-7--644-------3---346766666641---
Q gi|254780552|r 54 LDHV-LFVGPPGLGKTTLAQVVARELGVNF-------R------STS-G--PVI-------A---KAGDLAALLTNL--- 103 (334)
Q Consensus 54 ~~h~-Lf~GPpG~GKTtlA~iiA~~l~~~~-------~------~~s-~--~~~-------~---~~~dl~~~~~~~--- 103 (334)
++|. ||+||+|+||+++|+.+|+.+-|.- . .+. + |.+ . ++.+++.+...+
T Consensus 22 ~~HA~L~~G~~G~Gk~~la~~~a~~llC~~~~~~~~Cg~C~sC~l~~~g~HPD~~~i~~~~~k~I~vd~IR~l~~~~~~~ 101 (324)
T PRK06871 22 GHHALLFKADSGLGTEQLIRALAQWLMCQAPGDEQPCGQCHSCHLFQAGNHPDFHILEPIDGKDIGVDQVREINEKVSQF 101 (324)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHC
T ss_conf 54378768999978999999999998289999999888898999997389998799846788878899999999998646
Q ss_pred ---HCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCCCCCCHHHHHCCCCEEEC
Q ss_conf ---01637888757616989999999986347510025678765200046674005520455433554544201206732
Q gi|254780552|r 104 ---EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 (334)
Q Consensus 104 ---~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~~~l~~~l~sR~~~~~~~ 180 (334)
+...|++||++|++|..++++||..+|+ |... ..||..|+++.+|.++++|||. +++|
T Consensus 102 ~~~g~~KV~iI~~ae~m~~~AaNALLKtLEE----------Pp~~--------~~fiL~t~~~~~ll~TI~SRCq-~~~~ 162 (324)
T PRK06871 102 AQQGGNKVVYIQGAERLTEAAANALLKTLEE----------PRPN--------TYFLLQADLSASLLATIYSRCQ-TWLI 162 (324)
T ss_pred CCCCCCEEEEECCHHHHHHHHHHHHHHHHCC----------CCCC--------EEEEEEECCCCCCCCHHHHCCC-CEEC
T ss_conf 2205966999758888579999999998338----------9878--------3899987870103240862661-2008
Q ss_pred CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 645479999987776541210111111123320221015678877754
Q gi|254780552|r 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228 (334)
Q Consensus 181 ~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~Gd~R~AlnlLe~ 228 (334)
.+++.++...-++... ..+.+.....++.+.|.|-.|+.+++.
T Consensus 163 ~~p~~~~~~~wL~~~~-----~~~~~~~~~al~~~~g~pl~A~~~~~~ 205 (324)
T PRK06871 163 HVPEEQIALDWLQAQS-----SGEIQEIQTALRINYGRPLLALTFLEQ 205 (324)
T ss_pred CCCCHHHHHHHHHHHC-----CCCHHHHHHHHHHCCCCHHHHHHHHCC
T ss_conf 9949999999999746-----887299999999769987999998687
No 101
>pfam07728 AAA_5 AAA domain (dynein-related subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=99.77 E-value=7.2e-19 Score=134.92 Aligned_cols=118 Identities=29% Similarity=0.364 Sum_probs=84.2
Q ss_pred CEEEECCCCCCHHHHHHHHHHHC-CCCCCCCCCCCCCCHHHHHH---------------HHHHHHCCCHHHHHHHHHCCH
Q ss_conf 07997378855778999999861-89853125764433467666---------------666410163788875761698
Q gi|254780552|r 56 HVLFVGPPGLGKTTLAQVVAREL-GVNFRSTSGPVIAKAGDLAA---------------LLTNLEDRDVLFIDEIHRLSI 119 (334)
Q Consensus 56 h~Lf~GPpG~GKTtlA~iiA~~l-~~~~~~~s~~~~~~~~dl~~---------------~~~~~~~~~vlfiDEihrl~~ 119 (334)
++||+||||||||++|+.+|+.+ +.++..++.+......|+.+ ....++++.|+|+|||++.+.
T Consensus 1 ~vll~Gp~G~GKT~la~~la~~l~~~~~~~i~~~~~~~~~dl~G~~~~~~~~~~~~~g~l~~a~~~g~vl~lDEin~a~~ 80 (139)
T pfam07728 1 GVLLVGPPGTGKSELAERLAAALSNRPVFYVQLTRDTTEEDLKGRRNIANGTTSWVDGPLVRAAREGEIAVLDEINRANP 80 (139)
T ss_pred CEEEECCCCCHHHHHHHHHHHHCCCCCCHHHCCCCCCCHHHCCCCEECCCCCEEEECCHHHCCCCCCCEEEECCHHHCCH
T ss_conf 98999899756999999999980798311121465565222057342379935781551410101286899634344899
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCC-CCCEEECCCCCCEEEECCCCCC----CCCHHHHHCC
Q ss_conf 99999999863475100256787-6520004667400552045543----3554544201
Q gi|254780552|r 120 IVEEILYPAMEDFQLDLMVGEGP-SARSVKINLSRFTLIAATTRVG----LLTNPLQDRF 174 (334)
Q Consensus 120 ~~q~~Ll~~mE~~~i~i~~~~~~-~a~~~~~~~~~f~lI~ATt~~~----~l~~~l~sR~ 174 (334)
.+|..|+++||++++.+.-+... ...... ..+.|.+|++.|..+ .++++++|||
T Consensus 81 ~v~~~L~~~le~~~~~~~~~~~~~~~~~~~-~~~~f~viaT~N~~~~g~~~l~~Al~~RF 139 (139)
T pfam07728 81 DVLNSLLSLLDERRLLLPEGGELVKVAPDD-FAKRFRLIATMNPLDRGLNELSPALRSRF 139 (139)
T ss_pred HHHHHHHHHHCCCEEEECCCCEEECCCCCC-CCCCEEEEEEECCCCCCCCCCCHHHHCCC
T ss_conf 999999999748969836897273366667-89996999975896547800998997509
No 102
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.77 E-value=2.8e-18 Score=131.32 Aligned_cols=133 Identities=35% Similarity=0.414 Sum_probs=91.5
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHC---CCCCCCCCCCCCCCHHHHH----------
Q ss_conf 397999999999999866146776707997378855778999999861---8985312576443346766----------
Q gi|254780552|r 31 TGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL---GVNFRSTSGPVIAKAGDLA---------- 97 (334)
Q Consensus 31 iGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l---~~~~~~~s~~~~~~~~dl~---------- 97 (334)
.||+..+..++.++. ..+..|+||+||||||||++|+.||+++ +..+..++++.+.......
T Consensus 1 ~~~~~~~~~l~~~~~-----~~~~~~ill~GppGtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (151)
T cd00009 1 VGQEEAIEALREALE-----LPPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRL 75 (151)
T ss_pred CCCHHHHHHHHHHHH-----CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEHHHCCHHHHHHHHHHHHHHHH
T ss_conf 985799999999981-----879980899899998865999999997121379827854777046777757605778898
Q ss_pred -HHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCCC--CCCHHHHHCC
Q ss_conf -6666410163788875761698999999998634751002567876520004667400552045543--3554544201
Q gi|254780552|r 98 -ALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVG--LLTNPLQDRF 174 (334)
Q Consensus 98 -~~~~~~~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~~--~l~~~l~sR~ 174 (334)
........++|||||||+.+++..++.++..++.+.-.. .....+.+|+|||++. .+..++.+||
T Consensus 76 ~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~l~~~~~~~------------~~~~~~~vI~~tn~~~~~~~~~~~~~R~ 143 (151)
T cd00009 76 LFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLR------------IDRENVRVIGATNRPLLGDLDRALYDRL 143 (151)
T ss_pred HHHHHHHCCCCEEEEECHHHCCHHHHHHHHHHHHHHCCCC------------CCCCCEEEEEEECCCCCCCHHHHHHCCC
T ss_conf 9999997699869820166559999999999998715754------------0678889999528998868377642559
Q ss_pred CCEEEC
Q ss_conf 206732
Q gi|254780552|r 175 GIPIRL 180 (334)
Q Consensus 175 ~~~~~~ 180 (334)
...+.+
T Consensus 144 ~~~i~~ 149 (151)
T cd00009 144 DIRIVI 149 (151)
T ss_pred CEEEEC
T ss_conf 869863
No 103
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=1.7e-17 Score=126.52 Aligned_cols=192 Identities=24% Similarity=0.276 Sum_probs=112.5
Q ss_pred HHHCCHHHHHHHHHHHHHHHHH----CCCCCCCEEEECCCCCCHHHHHHHHHHHCC---CCCCCCCCCCCCC---HH---
Q ss_conf 7823979999999999998661----467767079973788557789999998618---9853125764433---46---
Q gi|254780552|r 28 EEFTGQVEACSNLKVFIEAAKA----RAEALDHVLFVGPPGLGKTTLAQVVARELG---VNFRSTSGPVIAK---AG--- 94 (334)
Q Consensus 28 ~dviGQ~~~~~~l~~~i~a~~~----~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~---~~~~~~s~~~~~~---~~--- 94 (334)
..||||++++..+..+|.-++. .++|+.++||.||.|||||-+|+.+|..|. ..++.++-+.+.. ++
T Consensus 491 ~rViGQd~AV~~v~~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLI 570 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLI 570 (786)
T ss_pred CCEECHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCEEECHHHHHHHHHHHHHH
T ss_conf 65017399999999999998569999998735788667886569999999999965997444554568777787799872
Q ss_pred ---------HHHHHHHHH---HCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCC
Q ss_conf ---------766666641---01637888757616989999999986347510025678765200046674005520455
Q gi|254780552|r 95 ---------DLAALLTNL---EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTR 162 (334)
Q Consensus 95 ---------dl~~~~~~~---~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~ 162 (334)
|--+.++.. ++.+|+++|||...++..++.||.+|++|+++= ++..++++.. |+|-.|++
T Consensus 571 GaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD-------~~Gr~VdFrN-tiIImTSN 642 (786)
T COG0542 571 GAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTD-------GQGRTVDFRN-TIIIMTSN 642 (786)
T ss_pred CCCCCCCEECCCCCHHHHHHCCCCEEEEECHHHHCCHHHHHHHHHHHCCCCEEC-------CCCCEEECCE-EEEEEECC
T ss_conf 799987200655400376606998688841264408899999999846780554-------8998884300-28998450
Q ss_pred C----------------------------CC-CCHHHHHCCCCEEECCCCCHHHHHHHHHHHHH---------HCCCHHH
Q ss_conf 4----------------------------33-55454420120673264547999998777654---------1210111
Q gi|254780552|r 163 V----------------------------GL-LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK---------LTGLAVT 204 (334)
Q Consensus 163 ~----------------------------~~-l~~~l~sR~~~~~~~~~~~~~el~~il~~~~~---------~~~i~~~ 204 (334)
. .+ ..|.++.|+.-++.|++++.+++.+|+....+ ...+.++
T Consensus 643 ~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~l~~~L~~~~i~l~~s 722 (786)
T COG0542 643 AGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQLNRLAKRLAERGITLELS 722 (786)
T ss_pred CCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEC
T ss_conf 26598975313432100467889999999853899898512617850679989999999999999999998689559988
Q ss_pred HHHHHHHHCCCC---CCHHHHHHHHH
Q ss_conf 111123320221---01567887775
Q gi|254780552|r 205 DEAACEIAMRSR---GTPRIAGRLLR 227 (334)
Q Consensus 205 ~~al~~ia~~s~---Gd~R~AlnlLe 227 (334)
+++..+|+..+- ..+|-.-+.++
T Consensus 723 ~~a~~~l~~~gyd~~~GARpL~R~Iq 748 (786)
T COG0542 723 DEAKDFLAEKGYDPEYGARPLRRAIQ 748 (786)
T ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHH
T ss_conf 89999999964687767367999999
No 104
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily; InterPro: IPR005938 The ATPase Cdc48 is required for membrane fusion and protein degradation. It possesses chaperone-like activities and can functionally interact with Hsc70. Yeast CDC48 plays a role in cell division control whereas eukaryotic homologues are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.; GO: 0016787 hydrolase activity.
Probab=99.76 E-value=3.8e-18 Score=130.51 Aligned_cols=157 Identities=32% Similarity=0.493 Sum_probs=100.6
Q ss_pred CCHHHHCCHHHHHHHHHHHHHHHHHCC--------CCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC----
Q ss_conf 987782397999999999999866146--------77670799737885577899999986189853125764433----
Q gi|254780552|r 25 RTLEEFTGQVEACSNLKVFIEAAKARA--------EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK---- 92 (334)
Q Consensus 25 ~~l~dviGQ~~~~~~l~~~i~a~~~~~--------~~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~~~~~~---- 92 (334)
-+++|+-|.++.+..++..++-..++. +++..+|++||||||||.+|+.+|++.+..|..+|||.+..
T Consensus 203 vtyediG~l~e~~~~~re~~elP~~hPe~f~~lGiePPkG~ll~GPPGtGktllaka~ane~~a~f~~inGPeimsky~G 282 (980)
T TIGR01243 203 VTYEDIGGLKEAVKKIREMVELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFIAINGPEIMSKYYG 282 (980)
T ss_pred CCHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCEEEEECCCHHHHHHCC
T ss_conf 20332033589999999988435756478986188998735875589861789999987530551788506034433136
Q ss_pred --HHHHHHHHHHHHCC--CHHHHHHHHHCCHHHHH-----------HHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEE
Q ss_conf --46766666641016--37888757616989999-----------9999863475100256787652000466740055
Q gi|254780552|r 93 --AGDLAALLTNLEDR--DVLFIDEIHRLSIIVEE-----------ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLI 157 (334)
Q Consensus 93 --~~dl~~~~~~~~~~--~vlfiDEihrl~~~~q~-----------~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI 157 (334)
-..++.++..+.++ .|+|||||+.+.+..++ -||..|+.-+ + -..+.+|
T Consensus 283 e~e~~lr~if~eaeenaP~iifideidaiaPkr~e~~Geve~r~v~qlltlmdGlk-------~---------rG~v~vi 346 (980)
T TIGR01243 283 ESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLK-------G---------RGKVIVI 346 (980)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHC-------C---------CCEEEEE
T ss_conf 30789999998653058707874121100764100001688999999999974002-------4---------8728998
Q ss_pred ECCCCCCCCCHHHHH--CCCCEEECCCCCHHHHHHHHHHHHH
Q ss_conf 204554335545442--0120673264547999998777654
Q gi|254780552|r 158 AATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAK 197 (334)
Q Consensus 158 ~ATt~~~~l~~~l~s--R~~~~~~~~~~~~~el~~il~~~~~ 197 (334)
|||++|..+.|+||. ||..-+.+..++...-.+|++-...
T Consensus 347 GatnrP~a~dPalrrPGrfdrei~~~~Pd~~~r~eil~~htr 388 (980)
T TIGR01243 347 GATNRPDALDPALRRPGRFDREIEIGVPDKEGRKEILQIHTR 388 (980)
T ss_pred ECCCCCCCCCHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHC
T ss_conf 146885002622427886443357418854567888876414
No 105
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=99.75 E-value=2.9e-17 Score=125.09 Aligned_cols=215 Identities=24% Similarity=0.335 Sum_probs=141.9
Q ss_pred CHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHC-------CCCCCC--CC----------
Q ss_conf 87782397999999999999866146776707997378855778999999861-------898531--25----------
Q gi|254780552|r 26 TLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-------GVNFRS--TS---------- 86 (334)
Q Consensus 26 ~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l-------~~~~~~--~s---------- 86 (334)
-|.-++||+.++..|. +.+.. ..+..+|..|++||||||+||.||.-| ||+|.- .+
T Consensus 15 pf~aivGqd~lk~aL~--l~av~---P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P~~~c~~c~~ 89 (423)
T COG1239 15 PFTAIVGQDPLKLALG--LNAVD---PQIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDPEEMCDECRA 89 (423)
T ss_pred CHHHHCCCHHHHHHHH--HHHCC---CCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEECCCCCCCCCCCHHHHHHHHHH
T ss_conf 6565437537778876--53026---310426876688752779999999867963321688788998870555199986
Q ss_pred -------------------CCCCCCHHH-HH------HH------------HHHHHCCCHHHHHHHHHCCHHHHHHHHHH
Q ss_conf -------------------764433467-66------66------------66410163788875761698999999998
Q gi|254780552|r 87 -------------------GPVIAKAGD-LA------AL------------LTNLEDRDVLFIDEIHRLSIIVEEILYPA 128 (334)
Q Consensus 87 -------------------~~~~~~~~d-l~------~~------------~~~~~~~~vlfiDEihrl~~~~q~~Ll~~ 128 (334)
-|. .-..| +. .. +..+ ++.||+|||++.|.-..|++||.+
T Consensus 90 k~~e~~~~~~~~r~v~~v~lPl-~ateDrvvGslDi~ka~~~g~~af~PGlLa~A-nRGIlYvDEvnlL~d~lvd~LLd~ 167 (423)
T COG1239 90 KGDELEWLPREKRKVPFVALPL-GATEDRLVGSLDIEKALEEGPKAFQPGLLARA-NRGILYVDEVNLLDDHLVDALLDV 167 (423)
T ss_pred HCCCCCCCCCCCEECCEECCCC-CCCHHHHCCCCCHHHHHHCCCCCCCCCCHHHC-CCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 2023244542210031223887-63043300456799997268300277511003-588798723343518999999999
Q ss_pred HHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCC-CCCCCHHHHHCCCCEEECCCCC-HHHHHHHHHHHHHH--------
Q ss_conf 6347510025678765200046674005520455-4335545442012067326454-79999987776541--------
Q gi|254780552|r 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTR-VGLLTNPLQDRFGIPIRLNFYE-IEDLKTIVQRGAKL-------- 198 (334)
Q Consensus 129 mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~-~~~l~~~l~sR~~~~~~~~~~~-~~el~~il~~~~~~-------- 198 (334)
++.|.-++-. +|.+ ++. ..+|+|||.+|- -+.|-++|+|||++.....+.+ .++-.+|++|...+
T Consensus 168 aaeG~n~ver-eGis---i~h-pa~fvligTmNPEeGeLrpqLlDRfg~~v~~~~~~~~~~rv~Ii~r~~~f~~~Pe~f~ 242 (423)
T COG1239 168 AAEGVNDVER-EGIS---IRH-PARFLLIGTMNPEEGELRPQLLDRFGLEVDTHYPLDLEERVEIIRRRLAFEAVPEAFL 242 (423)
T ss_pred HHHCCCEEEE-CCEE---ECC-CCCEEEEEECCCCCCCCCHHHHHHHCCEEECCCCCCHHHHHHHHHHHHHHHCCCHHHH
T ss_conf 9717740335-7503---136-7617999644854466324667541115623478878888999999887500829999
Q ss_pred ---------------------CCCHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf ---------------------21011111112332022----1015678877754333455415886427787876542
Q gi|254780552|r 199 ---------------------TGLAVTDEAACEIAMRS----RGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 (334)
Q Consensus 199 ---------------------~~i~~~~~al~~ia~~s----~Gd~R~AlnlLe~v~d~a~~~~~~~i~~~~~~~~l~~ 252 (334)
..+.++++++..|+..+ -...|..+...+..+.+|...|.-.++.+.++++...
T Consensus 243 ~~~~~~~~~lR~~ii~ar~~l~~V~l~~~~~~~ia~~~~~~~v~g~radi~~~r~a~a~aa~~Gr~~v~~~Di~~a~~l 321 (423)
T COG1239 243 EKYADAQRALRARIIAARSLLSEVELDDDAETKIAELCARLAVDGHRADIVVVRAAKALAALRGRTEVEEEDIREAAEL 321 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHH
T ss_conf 9999999999999999984466646767799999999998565787425678999999987539604520137777765
No 106
>KOG0740 consensus
Probab=99.75 E-value=4.2e-18 Score=130.24 Aligned_cols=185 Identities=26% Similarity=0.305 Sum_probs=128.6
Q ss_pred HHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHC-------CCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 787507898778239799999999999986614-------6776707997378855778999999861898531257644
Q gi|254780552|r 18 DISLLRPRTLEEFTGQVEACSNLKVFIEAAKAR-------AEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 (334)
Q Consensus 18 ~~~~lRP~~l~dviGQ~~~~~~l~~~i~a~~~~-------~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~~~~ 90 (334)
.....|+-.|+|+-|.+.+++.+..++.....| ..++..+|++||||+|||.++++||.|.+..|..+++..+
T Consensus 143 I~~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassL 222 (428)
T KOG0740 143 IGDTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSL 222 (428)
T ss_pred HHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHEECCCCCCHHHHHHHHHHHHCCEEEECCHHHH
T ss_conf 86027754135774056689986542322045537652354453111200589884479999998620665763068886
Q ss_pred CC--HH----HHHHHHH--HHHCCCHHHHHHHHHCC------------HHHHHHHHHHHHCCCCCCCCCCCCCCCEEECC
Q ss_conf 33--46----7666666--41016378887576169------------89999999986347510025678765200046
Q gi|254780552|r 91 AK--AG----DLAALLT--NLEDRDVLFIDEIHRLS------------IIVEEILYPAMEDFQLDLMVGEGPSARSVKIN 150 (334)
Q Consensus 91 ~~--~~----dl~~~~~--~~~~~~vlfiDEihrl~------------~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~ 150 (334)
.+ ++ -+++++. ......|+||||||++= +..-+.|++.. ... ..++
T Consensus 223 tsK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~------~~~-s~~~------- 288 (428)
T KOG0740 223 TSKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFD------GKN-SAPD------- 288 (428)
T ss_pred HHHCCCHHHHHHHHHHHHHHHCCCEEEEECHHHHHHHHCCCCCCCCCHHHHHHHHHHHC------CCC-CCCC-------
T ss_conf 53246707789999999987139708984025678863687545445556557776540------445-7888-------
Q ss_pred CCCCEEEECCCCCCCCCHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCC
Q ss_conf 6740055204554335545442012067326454799999877765412101111111233202210
Q gi|254780552|r 151 LSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRG 217 (334)
Q Consensus 151 ~~~f~lI~ATt~~~~l~~~l~sR~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~G 217 (334)
.+..+|||||+|.-+..+.+-||.-.+.+..++.+.-..++++..+..+-.+.+..+..|++..+|
T Consensus 289 -drvlvigaTN~P~e~Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Teg 354 (428)
T KOG0740 289 -DRVLVIGATNRPWELDEAARRRFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEG 354 (428)
T ss_pred -CEEEEEECCCCCHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCC
T ss_conf -707998158883677888888710315535988789999999999768787417789999988617
No 107
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.75 E-value=2.9e-17 Score=125.10 Aligned_cols=185 Identities=24% Similarity=0.306 Sum_probs=119.8
Q ss_pred HCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHC----------CCCCCCCCCCC-
Q ss_conf 5078987782397999999999999866146776707997378855778999999861----------89853125764-
Q gi|254780552|r 21 LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL----------GVNFRSTSGPV- 89 (334)
Q Consensus 21 ~lRP~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l----------~~~~~~~s~~~- 89 (334)
.-|-..+|-|||-+.=+.++-..+ +.+..+ +-+|.|.||||||.+|.-+|... |+.+..++-..
T Consensus 180 ~A~~gklDPvIGRd~EI~r~iqIL-~Rr~KN----NPiLVGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i~sLDlg~L 254 (852)
T TIGR03345 180 QAREGKIDPVLGRDDEIRQMIDIL-LRRRQN----NPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLL 254 (852)
T ss_pred HHHCCCCCCCCCCHHHHHHHHHHH-HHHCCC----CCEEECCCCCCHHHHHHHHHHHHHCCCCCHHHHCCEEEEEEHHHH
T ss_conf 998399998869499999999999-862479----974657999879999999999997699986774385678678888
Q ss_pred CCC---HHH----HHHHHHHH---HCCCHHHHHHHHHCC--------HHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCC
Q ss_conf 433---467----66666641---016378887576169--------899999999863475100256787652000466
Q gi|254780552|r 90 IAK---AGD----LAALLTNL---EDRDVLFIDEIHRLS--------IIVEEILYPAMEDFQLDLMVGEGPSARSVKINL 151 (334)
Q Consensus 90 ~~~---~~d----l~~~~~~~---~~~~vlfiDEihrl~--------~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~ 151 (334)
+.+ .+| +..++..+ +.+.||||||||.+= -.+-+.|=|+|-.|.+
T Consensus 255 vAGtkyRGeFEeRlk~ii~ei~~~~~~iILFIDEiHtlvGAG~~~G~~DaaNiLKPaLarGel----------------- 317 (852)
T TIGR03345 255 QAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARGEL----------------- 317 (852)
T ss_pred HHCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHCCCCCCCCCCCHHHHHHHHHHCCCC-----------------
T ss_conf 640357635999999999999848997699963487752899888862278875178737873-----------------
Q ss_pred CCCEEEECCCCCC--C-C--CHHHHHCCCCEEECCCCCHHHHHHHHHHHH----HHCCCHHHHHHHHHHHCCC------C
Q ss_conf 7400552045543--3-5--545442012067326454799999877765----4121011111112332022------1
Q gi|254780552|r 152 SRFTLIAATTRVG--L-L--TNPLQDRFGIPIRLNFYEIEDLKTIVQRGA----KLTGLAVTDEAACEIAMRS------R 216 (334)
Q Consensus 152 ~~f~lI~ATt~~~--~-l--~~~l~sR~~~~~~~~~~~~~el~~il~~~~----~~~~i~~~~~al~~ia~~s------~ 216 (334)
.+|||||-.. + + .++|--||..+ ..+.++.++-..|++... ...++.++++|+...+..| +
T Consensus 318 ---r~IGATT~~EYrk~iEkD~AL~RRFq~V-~V~EPs~eeti~IL~glk~~yE~hH~V~i~d~Ai~aAv~LS~RYI~dR 393 (852)
T TIGR03345 318 ---RTIAATTWAEYKKYFEKDPALTRRFQVV-KVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGR 393 (852)
T ss_pred ---EEEEECCHHHHHHHHHCCHHHHHHCCCC-CCCCCCHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHCCCC
T ss_conf ---4998357899988864268899624755-279998799999999879998554796870899999999987215545
Q ss_pred CCHHHHHHHHHHHHH
Q ss_conf 015678877754333
Q gi|254780552|r 217 GTPRIAGRLLRRVRD 231 (334)
Q Consensus 217 Gd~R~AlnlLe~v~d 231 (334)
-=|-.|+.+|..+..
T Consensus 394 ~LPDKAIDLlDeA~A 408 (852)
T TIGR03345 394 QLPDKAVSLLDTACA 408 (852)
T ss_pred CCCHHHHHHHHHHHH
T ss_conf 584278999999999
No 108
>pfam05491 RuvB_C Holliday junction DNA helicase ruvB C-terminus. The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family consists of the C-terminal region of the RuvB protein which is thought to be helicase DNA-binding domain.
Probab=99.75 E-value=1.9e-18 Score=132.28 Aligned_cols=74 Identities=59% Similarity=1.141 Sum_probs=72.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
Q ss_conf 00004677688999999751866206999999828745674678999999834305871899999988866488
Q gi|254780552|r 256 DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLGI 329 (334)
Q Consensus 256 d~~Gl~~~d~~~L~~l~~~~~~g~~~~~~isA~~ks~RgS~~daa~~yL~r~g~~~~~prgRrL~~~a~EdiGl 329 (334)
|+.|||..|++||+++.++|+|||+|+++||+.++..+.|++|++||||+|.|++.+|||||++|..||+|+|+
T Consensus 1 D~~GLd~~D~~yL~~l~~~f~ggPvGl~tla~~l~e~~~TiE~viEPyLi~~G~i~RTprGR~~T~~~~~~l~~ 74 (75)
T pfam05491 1 DELGLDEMDRRYLETLIEKFGGGPVGLDTLAAALGEERDTIEDVIEPYLIQIGFIQRTPRGRVATPKAYEHLGL 74 (75)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHCCC
T ss_conf 98777899999999999970899712999999986874089998439999954432088548866999988389
No 109
>pfam00493 MCM MCM2/3/5 family.
Probab=99.74 E-value=4.9e-17 Score=123.68 Aligned_cols=146 Identities=25% Similarity=0.278 Sum_probs=91.1
Q ss_pred HHCCHHHHHHHHHHHHHHHHH---------CCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCH------
Q ss_conf 823979999999999998661---------46776707997378855778999999861898531257644334------
Q gi|254780552|r 29 EFTGQVEACSNLKVFIEAAKA---------RAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA------ 93 (334)
Q Consensus 29 dviGQ~~~~~~l~~~i~a~~~---------~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~~~~~~~------ 93 (334)
++.|++.+|..+-..+-.+-. |+. -|+||.|-||||||.+.+-+++-.... +.++|...+.+
T Consensus 25 ~i~G~~~vK~ai~l~l~gg~~~~~~~~~~~Rg~--ihiLLvGdPG~gKSqlLk~~~~~~pr~-~~tsg~~ss~~GLTa~~ 101 (327)
T pfam00493 25 SIYGHEDVKKAILLQLFGGVKKNLPDGTRLRGD--INVLLVGDPGTAKSQLLKYVAKLAPRA-VYTSGKGSSAAGLTAAV 101 (327)
T ss_pred CCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCC--CEEEEECCCCCCHHHHHHHHHHHCCCC-EEECCCCCCCCCCEEEE
T ss_conf 124987999999999808987658888620365--118984699815609999999868870-88317766567761589
Q ss_pred -HHH--------HHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCCC
Q ss_conf -676--------66666410163788875761698999999998634751002567876520004667400552045543
Q gi|254780552|r 94 -GDL--------AALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVG 164 (334)
Q Consensus 94 -~dl--------~~~~~~~~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~~ 164 (334)
+|- .+.+. +..+.|++|||+++++...|.+|+.+||+.+|.| .++- .+.++ ..+|.+|+|.|..+
T Consensus 102 ~~d~~~~~~~leaGalv-lAd~Gv~cIDEfdk~~~~d~saL~EAMEqqtVsI--aKaG--i~~tL-~ar~sVlAaaNP~~ 175 (327)
T pfam00493 102 VRDPDTGEWTLEAGALV-LADGGVCCIDEFDKMNEEDRVAIHEAMEQQTISI--AKAG--IVATL-NARCSVLAAANPIF 175 (327)
T ss_pred EEECCCCCEEEECCCEE-ECCCCEEEEECCCCCCHHHHHHHHHHHHHCEEEE--ECCC--EEEEE-CCCCEEEEEECCCC
T ss_conf 98068883698368477-5589827850055588767999999998681776--3385--38972-58717998527767
Q ss_pred -------------CCCHHHHHCCCCEEECCCC
Q ss_conf -------------3554544201206732645
Q gi|254780552|r 165 -------------LLTNPLQDRFGIPIRLNFY 183 (334)
Q Consensus 165 -------------~l~~~l~sR~~~~~~~~~~ 183 (334)
.+++|++|||.+++.+.-+
T Consensus 176 g~yd~~~~~~~ni~Lp~~lLsRFDLif~l~D~ 207 (327)
T pfam00493 176 GRYDPKKSVAENINLPPPLLSRFDLIFVLLDK 207 (327)
T ss_pred CCCCCCCCHHHHCCCCHHHHCCEEEEEEEECC
T ss_conf 73788889888558976774501079884068
No 110
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=99.74 E-value=4.8e-16 Score=117.63 Aligned_cols=148 Identities=14% Similarity=0.181 Sum_probs=105.4
Q ss_pred CCCE-EEECCCCCCHHHHHHHHHHHCCCCC------------CCCC---CCCC-----C------CHHHHHHHHHH----
Q ss_conf 6707-9973788557789999998618985------------3125---7644-----3------34676666664----
Q gi|254780552|r 54 LDHV-LFVGPPGLGKTTLAQVVARELGVNF------------RSTS---GPVI-----A------KAGDLAALLTN---- 102 (334)
Q Consensus 54 ~~h~-Lf~GPpG~GKTtlA~iiA~~l~~~~------------~~~s---~~~~-----~------~~~dl~~~~~~---- 102 (334)
+||. ||+||+|+||+++|+.+|+.+.|.- ..+. -|.+ + ++.+++.+...
T Consensus 24 l~HA~L~~g~~G~Gk~~la~~la~~LlC~~~~~~~Cg~C~sC~l~~~g~HPD~~~i~pe~~~k~I~vd~IR~l~~~~~~~ 103 (319)
T PRK06090 24 IPGALLLQSDEGLGVESLVELFSHALLCQNYQSEACGFCHSCELMKSGNHPDLHVIKPEKEGKSITVEQIRQCNRLAQES 103 (319)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHC
T ss_conf 63067667999857999999999998089999998877877999875899982366123356768799999999997545
Q ss_pred --HHCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCCCCCCHHHHHCCCCEEEC
Q ss_conf --101637888757616989999999986347510025678765200046674005520455433554544201206732
Q gi|254780552|r 103 --LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRL 180 (334)
Q Consensus 103 --~~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~~~l~~~l~sR~~~~~~~ 180 (334)
.+...|++||++|+||..++++||..+|+ |... -.||..|+++.+|.++++|||. .+.|
T Consensus 104 ~~~g~~KV~iI~~ae~m~~~AaNALLKtLEE----------Pp~~--------t~fiL~t~~~~~ll~TI~SRCq-~~~l 164 (319)
T PRK06090 104 SQLGGYRLFVIEPADAMNESASNALLKTLEE----------PAPN--------CLFLLVTHNQKRLLPTIVSRCQ-QWVV 164 (319)
T ss_pred CCCCCCEEEEECCHHHCCHHHHHHHHHHHCC----------CCCC--------EEEEEEECCHHHCCCCHHHCCC-CCCC
T ss_conf 2106936999814443499999999998428----------9988--------3899876851208641876144-5028
Q ss_pred CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 645479999987776541210111111123320221015678877754
Q gi|254780552|r 181 NFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRR 228 (334)
Q Consensus 181 ~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~Gd~R~AlnlLe~ 228 (334)
.+++.++..+-++.. ++...+.+ .+.+.|.|-.|+.+++.
T Consensus 165 ~~p~~~~~~~WL~~q----~~~~~~~a----L~l~~g~Pl~a~~~l~~ 204 (319)
T PRK06090 165 TPPSTDQAMQWLKGQ----GISVPAYA----LKLNMGSPLKTLAMMKE 204 (319)
T ss_pred CCCCHHHHHHHHHHH----CCCCHHHH----HHHCCCCCHHHHHHHCC
T ss_conf 995999999999884----87557999----98849994999998638
No 111
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily; InterPro: IPR005938 The ATPase Cdc48 is required for membrane fusion and protein degradation. It possesses chaperone-like activities and can functionally interact with Hsc70. Yeast CDC48 plays a role in cell division control whereas eukaryotic homologues are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.; GO: 0016787 hydrolase activity.
Probab=99.73 E-value=3e-18 Score=131.14 Aligned_cols=177 Identities=27% Similarity=0.389 Sum_probs=123.9
Q ss_pred CHHHHCCHHHHHHHHHHHHHHHHHCC--------CCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC-C----
Q ss_conf 87782397999999999999866146--------7767079973788557789999998618985312576443-3----
Q gi|254780552|r 26 TLEEFTGQVEACSNLKVFIEAAKARA--------EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA-K---- 92 (334)
Q Consensus 26 ~l~dviGQ~~~~~~l~~~i~a~~~~~--------~~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~~~~~-~---- 92 (334)
.|+|+-|.++++..|+.+++|..+.. .++..+|+|||||||||.+|+.+|.+.+.+|+.+.||.+- +
T Consensus 539 ~W~diGGlee~kq~lreaveWPlk~~~~f~k~G~~PP~Gvll~GPPGtGktllakava~es~anfi~v~GPe~lskWvGe 618 (980)
T TIGR01243 539 KWEDIGGLEEVKQELREAVEWPLKAPEVFEKLGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGE 618 (980)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEECCCHHHHHHHCH
T ss_conf 10014667899999987752344405899860788997348746898616888887740145646774073122344032
Q ss_pred -HHHHHHHHHHHH--CCCHHHHHHHHHCCHHHH-------------HHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEE
Q ss_conf -467666666410--163788875761698999-------------9999986347510025678765200046674005
Q gi|254780552|r 93 -AGDLAALLTNLE--DRDVLFIDEIHRLSIIVE-------------EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTL 156 (334)
Q Consensus 93 -~~dl~~~~~~~~--~~~vlfiDEihrl~~~~q-------------~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~l 156 (334)
-+.++.++..+. ...|+|+|||+.+.+..- +-||.-|+.-. +...+.+
T Consensus 619 se~~ir~if~~arq~aP~~~f~deidaiaP~rG~~~~~~~vtd~~~nqll~e~dG~~----------------~~~~vvv 682 (980)
T TIGR01243 619 SEKAIREIFRKARQAAPAIIFFDEIDAIAPARGASLDEKGVTDRIVNQLLTELDGLE----------------ELSDVVV 682 (980)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEECHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCC----------------CCCCEEE
T ss_conf 479999999986412873787302111054124421001026899999998640443----------------4366589
Q ss_pred EECCCCCCCCCHHHHH--CCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHH-HHHHHHCCCCCCHH
Q ss_conf 5204554335545442--0120673264547999998777654121011111-11233202210156
Q gi|254780552|r 157 IAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDE-AACEIAMRSRGTPR 220 (334)
Q Consensus 157 I~ATt~~~~l~~~l~s--R~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~-al~~ia~~s~Gd~R 220 (334)
|+||++|..+.|+|+. ||..++....++.+.-.+|.+-..+ .+++.+| -+..+|+...|-.-
T Consensus 683 i~atnrPdi~dPallrPGr~dr~i~vP~Pd~~ar~~ifk~ht~--~~~l~~dv~l~~la~~teGytG 747 (980)
T TIGR01243 683 IAATNRPDILDPALLRPGRLDRLILVPAPDEEARLEIFKIHTR--SMPLAEDVDLEELAKKTEGYTG 747 (980)
T ss_pred EEECCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHC--CCCCCCCCCHHHHHHHHCCCCC
T ss_conf 8615887423610048874121686059855676767655311--1353013438999865168763
No 112
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit; InterPro: IPR012804 Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in Salmonella typhimurium) , . The corresponding cobalt chelatases are not homologous. Cobaltochelatase is responsible for the insertion of cobalt into the corrin ring of coenzyme B12 during its biosynthesis. Two versions have been well described. CbiK/CbiX is a monomeric, anaerobic version which acts early in the biosynthesis (IPR010388 from INTERPRO). CobNST is a trimeric, ATP-dependent, aerobic version which acts late in the biosynthesis, (IPR011953 from INTERPRO, IPR006537 from INTERPRO, IPR006538 from INTERPRO) . The two pathways differ in the point of cobalt insertion during corrin ring formation . There are apparently a number of variations on these two pathways, where the major differences seem to be concerned with the process of ring contraction . Cobaltochelatase shows similarities with magnesium chelatase, which is also a complex ATP-dependent enzyme made up of two separable components. However, unlike the situation in cobaltochelatase, one of these two components is membrane bound in magnesium chelatase . .
Probab=99.73 E-value=2.3e-17 Score=125.70 Aligned_cols=215 Identities=25% Similarity=0.306 Sum_probs=149.5
Q ss_pred HHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHC-------CCCCCC---------------
Q ss_conf 7782397999999999999866146776707997378855778999999861-------898531---------------
Q gi|254780552|r 27 LEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-------GVNFRS--------------- 84 (334)
Q Consensus 27 l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l-------~~~~~~--------------- 84 (334)
|.=||||+.+|..|- +.|.. ..+..+|..|.-||||+|.||.|+.-| ||.|.-
T Consensus 3 F~AiVGQe~LK~ALL--L~Av~---P~iGGVLirG~KGTAKSTaaR~L~~LLP~i~~v~gC~f~cdP~~P~~~C~~C~~~ 77 (688)
T TIGR02442 3 FTAIVGQEDLKLALL--LNAVN---PRIGGVLIRGEKGTAKSTAARGLAALLPDIDVVAGCPFSCDPDDPEEWCEECRRK 77 (688)
T ss_pred CCCCCCHHHHHHHHH--HEEEC---CCCCEEEEECCCCCHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 742214279865321--00252---6637078877888627898884876160236640478887778870400676755
Q ss_pred CC--CC---------CC--------CC---HHHHHH------------HHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 25--76---------44--------33---467666------------66641016378887576169899999999863
Q gi|254780552|r 85 TS--GP---------VI--------AK---AGDLAA------------LLTNLEDRDVLFIDEIHRLSIIVEEILYPAME 130 (334)
Q Consensus 85 ~s--~~---------~~--------~~---~~dl~~------------~~~~~~~~~vlfiDEihrl~~~~q~~Ll~~mE 130 (334)
+. |+ ++ .+ .=|+.. ++..++ +.||+||||+=|.-..=|.||-+..
T Consensus 78 ~~~~G~~~~~~~~~~~V~LPlgATEDRVvG~LDi~~al~~G~~~FqPGLLA~Ah-rGiLYiDEVNLLdDhlVD~lLDaaA 156 (688)
T TIGR02442 78 LEEQGTLPSEQRPVPFVNLPLGATEDRVVGSLDIERALKEGEKAFQPGLLAEAH-RGILYIDEVNLLDDHLVDVLLDAAA 156 (688)
T ss_pred HHCCCCCCCCCCCCEEEECCCCCCHHHHCCHHHHHHHHHHCHHHHCCCCHHHHC-CCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 520477531358735886587752332213054899987185660788617546-8716785200144147789999876
Q ss_pred CCCCCCCCCCCCCCCEEECCCCCCEEEECCC-CCCCCCHHHHHCCCCEEECCC-CCHHHHHHHHHHHHHH----------
Q ss_conf 4751002567876520004667400552045-543355454420120673264-5479999987776541----------
Q gi|254780552|r 131 DFQLDLMVGEGPSARSVKINLSRFTLIAATT-RVGLLTNPLQDRFGIPIRLNF-YEIEDLKTIVQRGAKL---------- 198 (334)
Q Consensus 131 ~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt-~~~~l~~~l~sR~~~~~~~~~-~~~~el~~il~~~~~~---------- 198 (334)
.|...|=- +|- +++ ....|+|||+.| |-+-|-|-|+|||+++....- -++++..+|++|...+
T Consensus 157 ~G~n~VER-EG~---S~~-Hparf~L~GTMNPEEG~LRPQLLDRFGL~V~v~~~~d~~~R~Ev~~Rrl~~d~dP~~F~~~ 231 (688)
T TIGR02442 157 MGVNRVER-EGL---SVS-HPARFVLIGTMNPEEGDLRPQLLDRFGLCVDVAASRDPEERVEVIRRRLAFDADPEAFAAR 231 (688)
T ss_pred CCCEEEEE-CCC---CHH-CHHHHHHHCCCCCCHHHHCHHHHHHHHCEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 48006763-574---300-1145532203785221102232424401155024358668999999997540267788999
Q ss_pred -------------------CCCHHHHHHHHHHHCCCC----CCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf -------------------210111111123320221----015678877754333455415886427787876542
Q gi|254780552|r 199 -------------------TGLAVTDEAACEIAMRSR----GTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 (334)
Q Consensus 199 -------------------~~i~~~~~al~~ia~~s~----Gd~R~AlnlLe~v~d~a~~~~~~~i~~~~~~~~l~~ 252 (334)
.+|.++++.+..|+..|. ...|.-|-+.+.++..|...|...|+.++++++..+
T Consensus 232 ~~~~~~~L~~~I~~AR~lLp~V~l~d~~~~~I~~lc~~~~V~GhRAdi~~~raArAlAAl~GR~~V~~eDv~~Aa~L 308 (688)
T TIGR02442 232 WAAEQEELRERIAAARSLLPSVRLSDSLLRFISELCIEFGVDGHRADIVMARAARALAALDGRRRVTAEDVREAAEL 308 (688)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEECHHHHHHHHHH
T ss_conf 99999999999999997547765888999999999997288852599999999999987728853537789999987
No 113
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.73 E-value=2.9e-16 Score=118.98 Aligned_cols=180 Identities=23% Similarity=0.312 Sum_probs=122.5
Q ss_pred HHHCCHHHHHHHHHHHHHHHH----HCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCH---HHHH---
Q ss_conf 782397999999999999866----146776707997378855778999999861898531257644334---6766---
Q gi|254780552|r 28 EEFTGQVEACSNLKVFIEAAK----ARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA---GDLA--- 97 (334)
Q Consensus 28 ~dviGQ~~~~~~l~~~i~a~~----~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~~~~~~~---~dl~--- 97 (334)
..||||++++..+..++.-++ ..++|+.++||.||+|||||-+|+.+|+.|+.++..++.+.+... +-+.
T Consensus 458 ~~viGQ~~Ai~~v~~ai~~~raGL~~~~rPigsFlf~GPTGVGKTElak~LA~~L~~~lir~DMSEy~e~hsvsrLiGaP 537 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAP 537 (758)
T ss_pred HHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHCCCC
T ss_conf 78745499999999999998638889999705899978998777999999999986677214266531201477744899
Q ss_pred ---------HHHH---HHHCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCC--
Q ss_conf ---------6666---41016378887576169899999999863475100256787652000466740055204554--
Q gi|254780552|r 98 ---------ALLT---NLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV-- 163 (334)
Q Consensus 98 ---------~~~~---~~~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~-- 163 (334)
+.++ .-++.+|+++|||...++..++.||..|++|+++--.|. ++++.. |+|..|++.
T Consensus 538 PGYVGy~eGG~Lte~Vr~~PysVvL~DEIEKAhpdV~nilLQvlD~G~LtD~~Gr-------~vdF~N-tiIImTSN~Ga 609 (758)
T PRK11034 538 PGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDNNGR-------KADFRN-VVLVMTTNAGV 609 (758)
T ss_pred CCCCCCCCCCCCCHHHHHCCCEEEEEHHHHHHCHHHHHHHHHHCCCCCCCCCCCC-------EEECEE-EEEEEECCCCH
T ss_conf 8666767777012878739877997336756398999988732377830179999-------884400-19998256174
Q ss_pred ------------------------CCCCHHHHHCCCCEEECCCCCHHHHHHHHHHHH---------HHCCCHHHHHHHHH
Q ss_conf ------------------------335545442012067326454799999877765---------41210111111123
Q gi|254780552|r 164 ------------------------GLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGA---------KLTGLAVTDEAACE 210 (334)
Q Consensus 164 ------------------------~~l~~~l~sR~~~~~~~~~~~~~el~~il~~~~---------~~~~i~~~~~al~~ 210 (334)
....|.++.|+.-++.|++++.+++.+|+.... +...+.++++|.++
T Consensus 610 ~~~~~~~~gf~~~~~~~~~~~~l~~~F~PEFlNRiD~ii~F~~L~~~~l~~Iv~~~l~~l~~rL~~~~i~l~~~~~a~~~ 689 (758)
T PRK11034 610 RETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQKGVSLEVSQEARDW 689 (758)
T ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHH
T ss_conf 87864214755420359999999954798677236747863889999999999999999999999789859988999999
Q ss_pred HHCCC
Q ss_conf 32022
Q gi|254780552|r 211 IAMRS 215 (334)
Q Consensus 211 ia~~s 215 (334)
|+..+
T Consensus 690 l~~~g 694 (758)
T PRK11034 690 LAEKG 694 (758)
T ss_pred HHHHC
T ss_conf 99848
No 114
>TIGR00678 holB DNA polymerase III, delta' subunit; InterPro: IPR004622 DNA-directed DNA polymerase (2.7.7.7 from EC) catalyzes DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. DNA polymerase III is a complex, multi-chain enzyme responsible for most of the replicative synthesis in bacteria. The enzyme also has 3' to 5' exonuclease activity. It has a core composed of alpha, epsilon and theta chains, that associate with a tau subunit which allows the core dimerisation to form the PolIII' complex. PolIII' associates with the gamma complex (gamma, delta, delta', psi and chi chains) and with the beta chain. This domain is the N-terminal half of the delta' subunit of DNA polymerase III. Delta' is homologous to the gamma and tau subunits, which form an outgroup for phylogenetic comparison. The gamma/tau branch of the tree is much more tightly conserved than the delta' branch, and some members of that branch score more highly against this model than some proteins classified as delta'. The noise cut-off is set to detect weakly scoring delta' subunits rather than to exclude gamma/tau subunits.; GO: 0003887 DNA-directed DNA polymerase activity, 0008408 3'-5' exonuclease activity, 0006260 DNA replication.
Probab=99.72 E-value=3.1e-17 Score=124.91 Aligned_cols=147 Identities=26% Similarity=0.346 Sum_probs=108.5
Q ss_pred CCCCE-EEECCCCCCHHHHHHHHHHHCCCC-------------CCCC-C------------CCC----------------
Q ss_conf 76707-997378855778999999861898-------------5312-5------------764----------------
Q gi|254780552|r 53 ALDHV-LFVGPPGLGKTTLAQVVARELGVN-------------FRST-S------------GPV---------------- 89 (334)
Q Consensus 53 ~~~h~-Lf~GPpG~GKTtlA~iiA~~l~~~-------------~~~~-s------------~~~---------------- 89 (334)
.++|. ||+||+|+||.++|+.+|+.+-|. |+.+ + +..
T Consensus 12 r~~HA~LF~G~~G~Gk~~~A~~~A~~l~C~~~~~~~~Cg~C~~C~~~~~G~HPD~~~~~P~~~~~~~~~de~~~~~~g~a 91 (216)
T TIGR00678 12 RLAHAYLFTGPEGVGKELLALALAKALLCEPRGGGEPCGECHSCRLIEAGNHPDLHRLEPEGQSKSLTADEAAEGEEGSA 91 (216)
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHCCCC
T ss_conf 78861254448887489999999999807785778888858889998707998237874234777777645897625642
Q ss_pred -------CCCHHHHHHHHHHH------HCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEE
Q ss_conf -------43346766666641------01637888757616989999999986347510025678765200046674005
Q gi|254780552|r 90 -------IAKAGDLAALLTNL------EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTL 156 (334)
Q Consensus 90 -------~~~~~dl~~~~~~~------~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~l 156 (334)
| ++.+++.+...+ +...|++||.+++||..+-++||+.+|+ |... -+|
T Consensus 92 ~~~~~~~I-k~dq~R~l~~~~~~~~~~~~~rVviI~~Ae~mn~~AANALLKtLEE----------Pp~~--------t~f 152 (216)
T TIGR00678 92 KRRALPQI-KVDQVRELVEFLSLTPQESGRRVVIIEDAERMNEAAANALLKTLEE----------PPPN--------TLF 152 (216)
T ss_pred CCCCCCCC-CHHHHHHHHHHHHHCCCCCCCEEEEECCHHHCCHHHHHHHHHHEEC----------CCCC--------EEE
T ss_conf 11367878-7278999999986064214751799767323258989865101012----------7987--------079
Q ss_pred EECCCCC--CCCCHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 5204554--33554544201206732645479999987776541210111111123320221015678
Q gi|254780552|r 157 IAATTRV--GLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222 (334)
Q Consensus 157 I~ATt~~--~~l~~~l~sR~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~Gd~R~A 222 (334)
|+.|+.+ .+|.++|+|||. ++.|.+++.+++.++|.+.....++ +++...++..++|.+..|
T Consensus 153 iL~~~~~DP~~lLpTI~SRCq-~~~f~~l~~~~~~~~L~~~g~~~~~---~~~a~~~~~~~~G~p~~a 216 (216)
T TIGR00678 153 ILITHSPDPERLLPTIRSRCQ-VLPFPPLSEEALLQWLIEQGISENV---PEAAELLLALAGGSPGRA 216 (216)
T ss_pred EEECCCCCHHHHCCCCCCCEE-EEEECCCCHHHHHHHHHHCCCCCCC---HHHHHHHHHHHCCCCCCC
T ss_conf 885088884332211103201-5862599889999999970878780---689999999846851239
No 115
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.71 E-value=1.1e-15 Score=115.44 Aligned_cols=258 Identities=23% Similarity=0.317 Sum_probs=162.1
Q ss_pred HCCCC-CHHHHC-CHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHC-----CCCCCCCCCCCCCC-
Q ss_conf 50789-877823-97999999999999866146776707997378855778999999861-----89853125764433-
Q gi|254780552|r 21 LLRPR-TLEEFT-GQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-----GVNFRSTSGPVIAK- 92 (334)
Q Consensus 21 ~lRP~-~l~dvi-GQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l-----~~~~~~~s~~~~~~- 92 (334)
.|.|+ +||.|| |...-.. ...+...+..-+....++.+||++|+|||-|.++|++++ +..+..+++..+.+
T Consensus 111 ~Ln~~yTFdnFVvG~sN~lA-~aAA~~Va~~pg~~yNPLfIyG~~GlGKTHLl~AIgn~~~~~~p~~~v~Y~tae~F~~~ 189 (447)
T PRK00149 111 NLNPKYTFDNFVVGKSNRLA-HAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVSSEKFTND 189 (447)
T ss_pred CCCCCCCCCCCEECCCCHHH-HHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHH
T ss_conf 88855603262226985999-99999998376767785589779988788999999999998589972899549999999
Q ss_pred ------HHHHHHHHHHHHCCCHHHHHHHHHCCH--HHHHHHHHHH----HCCCCCCCCCCCCCCCEEECCCCCCEEEECC
Q ss_conf ------467666666410163788875761698--9999999986----3475100256787652000466740055204
Q gi|254780552|r 93 ------AGDLAALLTNLEDRDVLFIDEIHRLSI--IVEEILYPAM----EDFQLDLMVGEGPSARSVKINLSRFTLIAAT 160 (334)
Q Consensus 93 ------~~dl~~~~~~~~~~~vlfiDEihrl~~--~~q~~Ll~~m----E~~~i~i~~~~~~~a~~~~~~~~~f~lI~AT 160 (334)
.+++.........-+||+||.||-|.. ..|+-|+... +.++- .|.+.
T Consensus 190 ~v~al~~~~~~~Fr~~yr~~DvLliDDiqfl~gk~~tqeeff~~fn~l~~~~kq---------------------iv~ts 248 (447)
T PRK00149 190 FVKALRNNAMEEFKEKYRSVDVLLIDDIQFLAGKEKTQEEFFHTFNALHENNKQ---------------------IVITS 248 (447)
T ss_pred HHHHHHCCCHHHHHHHHHCCCEEEECHHHHHHCCHHHHHHHHHHHHHHHHCCCE---------------------EEEEC
T ss_conf 999985186999999997288543214888605577999999999999984996---------------------89957
Q ss_pred CCCC----CCCHHHHHCC--CCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 5543----3554544201--206732645479999987776541210111111123320221015678877754333455
Q gi|254780552|r 161 TRVG----LLTNPLQDRF--GIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE 234 (334)
Q Consensus 161 t~~~----~l~~~l~sR~--~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~Gd~R~AlnlLe~v~d~a~ 234 (334)
.++| .+.+-|+||| +++..+++++.+--.+|+++.++..++.++++++.+||.+..++.|..-..|.++.-++.
T Consensus 249 d~~P~~l~~l~~rL~SRf~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~l~~~v~~~iA~~~~~nvR~LeGal~~l~a~~~ 328 (447)
T PRK00149 249 DRPPKELEGLEDRLRSRFEWGLTVDIEPPDLETRVAILQKKAEEEGINLPNEVLEFIAKRIRSNIRELEGALNRLVAYAS 328 (447)
T ss_pred CCCHHHCCCCCHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 88967656511778867637626510599999999999999997289999899999997126889999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCC---CCHHHHHHHHHHHHH
Q ss_conf 4158864277878765421-00000046776889999997518662069999998287456---746789999998343
Q gi|254780552|r 235 VAHAKTITREIADAALLRL-AIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRD---AIEDLIEPYMIQQGF 309 (334)
Q Consensus 235 ~~~~~~i~~~~~~~~l~~~-~id~~Gl~~~d~~~L~~l~~~~~~g~~~~~~isA~~ks~Rg---S~~daa~~yL~r~g~ 309 (334)
..+. .|+.+.+++++..+ ...+..+.. -.+.++.+++|+=. .+.+.+.-|. +-+.-+-.||+|...
T Consensus 329 ~~~~-~i~~~~~~~~l~~~~~~~~~~it~--~~I~~~Va~~f~i~------~~dl~s~~R~~~i~~aRqiamyL~r~~t 398 (447)
T PRK00149 329 LTGR-PITLELAKEALKDLLRLQKKQITI--ENIQKVVAEYYNVK------VSDLKSKRRTRNIARPRQIAMYLAKELT 398 (447)
T ss_pred HHCC-CCCHHHHHHHHHHHHHCCCCCCCH--HHHHHHHHHHHCCC------HHHHCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 8689-999999999999874036787899--99999999880983------9995378888445589999999999885
No 116
>KOG0742 consensus
Probab=99.71 E-value=5e-17 Score=123.65 Aligned_cols=163 Identities=23% Similarity=0.332 Sum_probs=112.2
Q ss_pred CCCC-HHHHCCHHHHHHHHHH---HHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC-----CH
Q ss_conf 7898-7782397999999999---9998661467767079973788557789999998618985312576443-----34
Q gi|254780552|r 23 RPRT-LEEFTGQVEACSNLKV---FIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA-----KA 93 (334)
Q Consensus 23 RP~~-l~dviGQ~~~~~~l~~---~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~~~~~-----~~ 93 (334)
+++. |++||=...+.+++.. +-...+.++.++.+|+||||||||||.+|+-||...|..+-...|..+. .+
T Consensus 349 ~gk~pl~~ViL~psLe~Rie~lA~aTaNTK~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPlG~qaV 428 (630)
T KOG0742 349 RGKDPLEGVILHPSLEKRIEDLAIATANTKKHQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPLGAQAV 428 (630)
T ss_pred CCCCCCCCEECCHHHHHHHHHHHHHHCCCCCCCCHHHHEEEECCCCCCHHHHHHHHHHHCCCCEEHHCCCCCCCCHHHHH
T ss_conf 57777678412777999999998874043002430440032479998604999999885287410013787555217889
Q ss_pred HHHHHHHHH---HHCCCHHHHHHHHHCCH----HH-HHHHHHHHHCCCCCCC-CCCCCCCCEEECCCCCCEEEECCCCCC
Q ss_conf 676666664---10163788875761698----99-9999998634751002-567876520004667400552045543
Q gi|254780552|r 94 GDLAALLTN---LEDRDVLFIDEIHRLSI----IV-EEILYPAMEDFQLDLM-VGEGPSARSVKINLSRFTLIAATTRVG 164 (334)
Q Consensus 94 ~dl~~~~~~---~~~~~vlfiDEihrl~~----~~-q~~Ll~~mE~~~i~i~-~~~~~~a~~~~~~~~~f~lI~ATt~~~ 164 (334)
.-+..+|.. .++|-+|||||.+.|=. .. -++...++.-+ +. ++. . -.+|+|+.|||+|+
T Consensus 429 TkiH~lFDWakkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAl---LfRTGd--q-------SrdivLvlAtNrpg 496 (630)
T KOG0742 429 TKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNAL---LFRTGD--Q-------SRDIVLVLATNRPG 496 (630)
T ss_pred HHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHCCCCCCHHHHHHHHHH---HHHCCC--C-------CCCEEEEEECCCCC
T ss_conf 99999878875156644998611678998752010258899999889---876256--5-------54268996058832
Q ss_pred CCCHHHHHCCCCEEECCCCCHHHHHHHHHHHHH
Q ss_conf 355454420120673264547999998777654
Q gi|254780552|r 165 LLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK 197 (334)
Q Consensus 165 ~l~~~l~sR~~~~~~~~~~~~~el~~il~~~~~ 197 (334)
.+..++-||+.-+++|..+..+|-.+++.-...
T Consensus 497 dlDsAV~DRide~veFpLPGeEERfkll~lYln 529 (630)
T KOG0742 497 DLDSAVNDRIDEVVEFPLPGEEERFKLLNLYLN 529 (630)
T ss_pred CHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHH
T ss_conf 101678765554130689977899999999999
No 117
>pfam00308 Bac_DnaA Bacterial dnaA protein.
Probab=99.71 E-value=1.4e-16 Score=120.84 Aligned_cols=186 Identities=22% Similarity=0.295 Sum_probs=124.1
Q ss_pred CHHHH-CCH--HHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCCC-----CCCCCCCCCCCC-----
Q ss_conf 87782-397--99999999999986614677670799737885577899999986189-----853125764433-----
Q gi|254780552|r 26 TLEEF-TGQ--VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV-----NFRSTSGPVIAK----- 92 (334)
Q Consensus 26 ~l~dv-iGQ--~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~~-----~~~~~s~~~~~~----- 92 (334)
+|++| ||. +.+....+.+.+ ..+....++.+|||+|+|||.|.++++++... .+..+++..+..
T Consensus 6 TFdnF~vg~~N~~a~~~~~~i~~---~~~~~~npl~i~G~~G~GKTHLLqA~~~~~~~~~~~~~v~yl~~~~~~~~~~~~ 82 (219)
T pfam00308 6 TFENFVIGSSNRFAHAAALAVAE---APGKAYNPLFIYGGVGLGKTHLLHAIGNYALRNFPNLRVVYLTSEEFLNDFVDA 82 (219)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHH---CCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHH
T ss_conf 71020236838999999999996---758767826998899998889999999999984999828884399999988999
Q ss_pred --HHHHHHHHHHHHCCCHHHHHHHHHCCH--HHHHHHHHHHH----CCCCCCCCCCCCCCCEEECCCCCCEEEECCCCCC
Q ss_conf --467666666410163788875761698--99999999863----4751002567876520004667400552045543
Q gi|254780552|r 93 --AGDLAALLTNLEDRDVLFIDEIHRLSI--IVEEILYPAME----DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVG 164 (334)
Q Consensus 93 --~~dl~~~~~~~~~~~vlfiDEihrl~~--~~q~~Ll~~mE----~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~~ 164 (334)
-+++......+..-++|+||.||.+.. ..|+.|+..+. .++- +|.+...++
T Consensus 83 l~~~~~~~f~~~l~~~d~l~iDDi~~l~~~~~~ee~lf~l~N~~~~~~~~---------------------lllts~~~p 141 (219)
T pfam00308 83 LRDNKIEAFKKSYRNVDLLLIDDIQFLAGKEKTQEEFFHTFNALHENNKQ---------------------IVLTSDRPP 141 (219)
T ss_pred HHCCCHHHHHHHHHHCCHHHHCCHHHHCCCHHHHHHHHHHHHHHHHCCCE---------------------EEEECCCCC
T ss_conf 98188889999976323365223676568647899999999999972986---------------------999779981
Q ss_pred ----CCCHHHHHCC--CCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf ----3554544201--2067326454799999877765412101111111233202210156788777543334554
Q gi|254780552|r 165 ----LLTNPLQDRF--GIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235 (334)
Q Consensus 165 ----~l~~~l~sR~--~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~Gd~R~AlnlLe~v~d~a~~ 235 (334)
...+-|+||+ ++++.+++++.++..+++++.++..++.++++++.+|+++.+.|+|....+|++..-||..
T Consensus 142 ~~l~~~~~dL~SRL~~g~~~~i~~pdd~~~~~iL~~~a~~r~l~l~~~v~~yl~~r~~R~~r~L~~~L~~L~~~~~~ 218 (219)
T pfam00308 142 KELEGFEDRLRSRFEWGLIIAIEPPDLETRLAILRKKAEEENINIPNEVLNFIAQRITDNVRELEGALNRLLAFASF 218 (219)
T ss_pred CCCCCCCHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCC
T ss_conf 00245327799998687566116999999999999999984999999999999984279899999999999985507
No 118
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=99.71 E-value=2.4e-16 Score=119.48 Aligned_cols=133 Identities=14% Similarity=0.152 Sum_probs=86.2
Q ss_pred CCCCE-EEECCCCCCHHHHHHHHHHHCCCC----------------CCCCC--CC-CCCCHHHHHHHHHHH------HCC
Q ss_conf 76707-997378855778999999861898----------------53125--76-443346766666641------016
Q gi|254780552|r 53 ALDHV-LFVGPPGLGKTTLAQVVARELGVN----------------FRSTS--GP-VIAKAGDLAALLTNL------EDR 106 (334)
Q Consensus 53 ~~~h~-Lf~GPpG~GKTtlA~iiA~~l~~~----------------~~~~s--~~-~~~~~~dl~~~~~~~------~~~ 106 (334)
.++|. ||+||+|+||+++|+.+|+.+-|+ ++.+. +. .+.++.+++.+...+ +..
T Consensus 17 Rl~HAyLf~Gp~G~GK~~~A~~~A~~LLc~~~p~~~~~i~~~~HPD~~~i~pe~k~~~~~Id~iR~l~~~i~~~p~~g~~ 96 (290)
T PRK05917 17 KVPSAILLHGQDLSNLSQYAYELASLILLESSPEAQYKISQKIHPDIHEFFPEGKGRLHSIETPRAIKKQIWIHPYEANY 96 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCC
T ss_conf 96606876899986599999999999857899616889874689985996157778878678999999996418646882
Q ss_pred CHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCCCCCCHHHHHCCCCEEECCCCCHH
Q ss_conf 37888757616989999999986347510025678765200046674005520455433554544201206732645479
Q gi|254780552|r 107 DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIE 186 (334)
Q Consensus 107 ~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~~~l~~~l~sR~~~~~~~~~~~~~ 186 (334)
.|++|||+|++|..++++||..+|+ |.. ...||..|++++.|.++++|||. .++|..-
T Consensus 97 KV~IId~Ad~Mn~~AaNALLKtLEE----------PP~--------~tvfILit~~~~~lLpTI~SRCQ-~I~i~~~--- 154 (290)
T PRK05917 97 KIYIIHEADRMTLDAISAFLKVLED----------PPK--------HSVIILTSAKPQRLPPTIRSRSL-SIHIPGE--- 154 (290)
T ss_pred EEEEECCHHHHCHHHHHHHHHHHCC----------CCC--------CEEEEEEECCHHHCCHHHHHCCC-EEECCCC---
T ss_conf 6999756776389999999997347----------987--------85999986992548237763351-1677762---
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCH
Q ss_conf 999987776541210111111123320221015
Q gi|254780552|r 187 DLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTP 219 (334)
Q Consensus 187 el~~il~~~~~~~~i~~~~~al~~ia~~s~Gd~ 219 (334)
+...++++-+..++++++|.+
T Consensus 155 ------------e~~~i~~e~~~~l~~~a~g~~ 175 (290)
T PRK05917 155 ------------EKTLPSKEDIAYLIRYAQGKE 175 (290)
T ss_pred ------------CCCCCCHHHHHHHHHHHCCCH
T ss_conf ------------013478899999999846973
No 119
>PRK08903 hypothetical protein; Validated
Probab=99.71 E-value=3.8e-16 Score=118.27 Aligned_cols=196 Identities=17% Similarity=0.215 Sum_probs=135.9
Q ss_pred CCHHHHCC--HHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCC---CCCCCCCCCCCCCHHHHHHH
Q ss_conf 98778239--79999999999998661467767079973788557789999998618---98531257644334676666
Q gi|254780552|r 25 RTLEEFTG--QVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG---VNFRSTSGPVIAKAGDLAAL 99 (334)
Q Consensus 25 ~~l~dviG--Q~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~---~~~~~~s~~~~~~~~dl~~~ 99 (334)
.+|+.||. ...+...++.+... ...-+.+.+|||+|+|||-|.++++++.. .....+++.. ....
T Consensus 15 ~tfdnFv~g~n~~~~~~l~~~~~~----~~~~~~l~i~G~~G~GKTHLl~a~~~~~~~~~~~~~yl~~~~------~~~~ 84 (227)
T PRK08903 15 PTFDNFIAGENAELVTRLRELAAG----PVADRFFYLWGEAGSGRSHLLQALVAAASEGGKNARYLDPAS------PLLA 84 (227)
T ss_pred CCHHCCCCCCHHHHHHHHHHHHHC----CCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCCC------CHHH
T ss_conf 764315577759999999988743----887866999899999888999999999980699749965110------4577
Q ss_pred HHHHHCCCHHHHHHHHHCCHHHHHHHHHHHH----CCCCCCCCCCCCCCCEEECCCCCCEEEECCCCCCC---CCHHHHH
Q ss_conf 6641016378887576169899999999863----47510025678765200046674005520455433---5545442
Q gi|254780552|r 100 LTNLEDRDVLFIDEIHRLSIIVEEILYPAME----DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL---LTNPLQD 172 (334)
Q Consensus 100 ~~~~~~~~vlfiDEihrl~~~~q~~Ll~~mE----~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~~~---l~~~l~s 172 (334)
+......+++.||.||.++...|+.|+.... .++- .++.+.+.++. +.+-|+|
T Consensus 85 ~~~~~~~d~l~iDDi~~i~~~~q~~lF~l~N~~~~~~~~--------------------~ll~s~~~~p~~l~~~~DL~S 144 (227)
T PRK08903 85 FDFDPRAELYAVDDVERLDDAQQIALFNLFNRVRAHGKT--------------------ALLVAGPAAPLALDVREDLRT 144 (227)
T ss_pred HHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCC--------------------EEEECCCCCHHHCCCCHHHHH
T ss_conf 742001898999641148956999999999999972994--------------------899718997120120089999
Q ss_pred CC--CCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 01--2067326454799999877765412101111111233202210156788777543334554158864277878765
Q gi|254780552|r 173 RF--GIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250 (334)
Q Consensus 173 R~--~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~Gd~R~AlnlLe~v~d~a~~~~~~~i~~~~~~~~l 250 (334)
|| +.+..+++++.+.+..|+++.+...++.++++++.+|+++...|.|.....+.++-.+ .......||...+++++
T Consensus 145 Rl~~gl~~~i~~pdde~~~~iL~~~a~~rgl~l~~~v~~yl~~r~~R~~~~L~~~l~~Ld~~-sl~~kr~iTi~lvkevL 223 (227)
T PRK08903 145 RLGWGLVYEVKPLSDEDKIAALKAAAAERGLQLADEVPDYLLTHFRRDMPSLMALLDALDRY-SLEQKRAVTLPLLREML 223 (227)
T ss_pred HHHCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHH-HHHCCCCCCHHHHHHHH
T ss_conf 99389738997979999999999999962999988999999998347899999999999999-99829999999999985
Q ss_pred H
Q ss_conf 4
Q gi|254780552|r 251 L 251 (334)
Q Consensus 251 ~ 251 (334)
.
T Consensus 224 a 224 (227)
T PRK08903 224 A 224 (227)
T ss_pred C
T ss_conf 5
No 120
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=1.8e-16 Score=120.18 Aligned_cols=207 Identities=23% Similarity=0.320 Sum_probs=141.6
Q ss_pred HCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCC-----CCCCCCCCCCCHHHHH-------
Q ss_conf 2397999999999999866146776707997378855778999999861898-----5312576443346766-------
Q gi|254780552|r 30 FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN-----FRSTSGPVIAKAGDLA------- 97 (334)
Q Consensus 30 viGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~-----~~~~s~~~~~~~~dl~------- 97 (334)
+.+-+.-+..+..++..+. ++..++++++|||||||||.+++-+++++... +..+|+.....+..+.
T Consensus 19 l~~Re~ei~~l~~~l~~~~-~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~ 97 (366)
T COG1474 19 LPHREEEINQLASFLAPAL-RGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKL 97 (366)
T ss_pred CCCHHHHHHHHHHHHHHHH-CCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCHHHHHHHHHHHH
T ss_conf 1034889999999999985-589986079988999873289999999997331567579995130787879999999982
Q ss_pred ---------------HHHHHH---HCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEEC
Q ss_conf ---------------666641---01637888757616989999999986347510025678765200046674005520
Q gi|254780552|r 98 ---------------ALLTNL---EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAA 159 (334)
Q Consensus 98 ---------------~~~~~~---~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~A 159 (334)
.+...+ ...-|+.+||++.|.+..++.||...-. .+.+ . .++.+|+-
T Consensus 98 ~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~------~~~~-~--------~~v~vi~i 162 (366)
T COG1474 98 GKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRA------PGEN-K--------VKVSIIAV 162 (366)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHCCCCCHHHHEECC------CCCC-C--------EEEEEEEE
T ss_conf 6899767632689999999777418759999764765415464145511124------7767-5--------37999997
Q ss_pred CCCCC---CCCHHHHHCCCC-EEECCCCCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHC---CCCCCHHHHHHHHHHHH
Q ss_conf 45543---355454420120-6732645479999987776541--210111111123320---22101567887775433
Q gi|254780552|r 160 TTRVG---LLTNPLQDRFGI-PIRLNFYEIEDLKTIVQRGAKL--TGLAVTDEAACEIAM---RSRGTPRIAGRLLRRVR 230 (334)
Q Consensus 160 Tt~~~---~l~~~l~sR~~~-~~~~~~~~~~el~~il~~~~~~--~~i~~~~~al~~ia~---~s~Gd~R~AlnlLe~v~ 230 (334)
+++.. .+.+-+.||++. .+.|.+|+.+||..|+...++. ..-.++++++..+|. ...||+|.|+.+|+++.
T Consensus 163 ~n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~ 242 (366)
T COG1474 163 SNDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAG 242 (366)
T ss_pred ECCHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 35488999875667650687635528989899999999999854046874803999999988761864776089999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 3455415886427787876542
Q gi|254780552|r 231 DFAEVAHAKTITREIADAALLR 252 (334)
Q Consensus 231 d~a~~~~~~~i~~~~~~~~l~~ 252 (334)
..|...+...++.+++.++-..
T Consensus 243 eiAe~~~~~~v~~~~v~~a~~~ 264 (366)
T COG1474 243 EIAEREGSRKVSEDHVREAQEE 264 (366)
T ss_pred HHHHHCCCCCCCHHHHHHHHHH
T ss_conf 9865407885370047889987
No 121
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.70 E-value=5.7e-15 Score=111.06 Aligned_cols=256 Identities=20% Similarity=0.227 Sum_probs=160.7
Q ss_pred HCCCC-CHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCCC-----CCCCCCCCCCCCHH
Q ss_conf 50789-8778239799999999999986614677670799737885577899999986189-----85312576443346
Q gi|254780552|r 21 LLRPR-TLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV-----NFRSTSGPVIAKAG 94 (334)
Q Consensus 21 ~lRP~-~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~~-----~~~~~s~~~~~~~~ 94 (334)
.+-|+ +|+.||.=..-.-........+...+.....+.+|||.|+|||-|+++++++... .+..+++..+. .
T Consensus 79 ~l~~~ytFdnFv~g~~N~~A~aa~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~--~ 156 (408)
T COG0593 79 GLNPKYTFDNFVVGPSNRLAYAAAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFT--N 156 (408)
T ss_pred CCCCCCCHHHEEECCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHH--H
T ss_conf 68988855422047744999999999875668868957998799997899999999999862998648850489989--9
Q ss_pred HHHHH---------HHHHHCCCHHHHHHHHHCCHH--HHHHHHHHH----HCCCCCCCCCCCCCCCEEECCCCCCEEEEC
Q ss_conf 76666---------664101637888757616989--999999986----347510025678765200046674005520
Q gi|254780552|r 95 DLAAL---------LTNLEDRDVLFIDEIHRLSII--VEEILYPAM----EDFQLDLMVGEGPSARSVKINLSRFTLIAA 159 (334)
Q Consensus 95 dl~~~---------~~~~~~~~vlfiDEihrl~~~--~q~~Ll~~m----E~~~i~i~~~~~~~a~~~~~~~~~f~lI~A 159 (334)
+.... -... .-++++||.|+.+... .|+.|+-.. ++++ ++|.+
T Consensus 157 ~~v~a~~~~~~~~Fk~~y-~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~k---------------------qIvlt 214 (408)
T COG0593 157 DFVKALRDNEMEKFKEKY-SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGK---------------------QIVLT 214 (408)
T ss_pred HHHHHHHHHHHHHHHHHH-CCCEEEECHHHHHCCCHHHHHHHHHHHHHHHHCCC---------------------EEEEE
T ss_conf 999998850488888764-26735551386756771579999999998885088---------------------79997
Q ss_pred CCCCCC----CCHHHHHCCC--CEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 455433----5545442012--0673264547999998777654121011111112332022101567887775433345
Q gi|254780552|r 160 TTRVGL----LTNPLQDRFG--IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233 (334)
Q Consensus 160 Tt~~~~----l~~~l~sR~~--~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~Gd~R~AlnlLe~v~d~a 233 (334)
..++|+ +.+-|+|||. ++..+++++.+...+|+.+.++..++.++++++.+||.+...++|...-.|+++.-++
T Consensus 215 sdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~~nvReLegaL~~l~~~a 294 (408)
T COG0593 215 SDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRLDRNVRELEGALNRLDAFA 294 (408)
T ss_pred CCCCCHHHCCCCHHHHHHHHCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf 07883221103588998986305775279888999999999998658888879999999970030999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCC---CCCHHHHHHHHHHHHH
Q ss_conf 541588642778787654210000004677688999999751866206999999828745---6746789999998343
Q gi|254780552|r 234 EVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPR---DAIEDLIEPYMIQQGF 309 (334)
Q Consensus 234 ~~~~~~~i~~~~~~~~l~~~~id~~Gl~~~d~~~L~~l~~~~~~g~~~~~~isA~~ks~R---gS~~daa~~yL~r~g~ 309 (334)
...+. .||...+++++..+.....-... -.+++..+++|+=. .+-+.+..| -+-+.-+--||+|...
T Consensus 295 ~~~~~-~iTi~~v~e~L~~~~~~~~~iti--e~I~~~Va~~y~v~------~~dl~s~~R~~~i~~~RqiamyL~r~lt 364 (408)
T COG0593 295 LFTKR-AITIDLVKEILKDLLRAGEKITI--EDIQKIVAEYYNVK------VSDLLSKSRTRNIVRPRQIAMYLARELT 364 (408)
T ss_pred HHCCC-CCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHCCC------HHHHHCCCCCCCCCHHHHHHHHHHHHHC
T ss_conf 85387-57699999999986401455899--99999999884988------9996245666234319999999999871
No 122
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.70 E-value=1.6e-15 Score=114.36 Aligned_cols=192 Identities=22% Similarity=0.267 Sum_probs=123.6
Q ss_pred HHHCCHHHHHHHHHHHHHHHH----HCCCCCCCEEEECCCCCCHHHHHHHHHHHC-C--CCCCCCCCCCCCCH---HHH-
Q ss_conf 782397999999999999866----146776707997378855778999999861-8--98531257644334---676-
Q gi|254780552|r 28 EEFTGQVEACSNLKVFIEAAK----ARAEALDHVLFVGPPGLGKTTLAQVVAREL-G--VNFRSTSGPVIAKA---GDL- 96 (334)
Q Consensus 28 ~dviGQ~~~~~~l~~~i~a~~----~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l-~--~~~~~~s~~~~~~~---~dl- 96 (334)
..||||++++..+..++.-++ ..++|+.++||.||.|||||-+|+.+|..| | ..++.++-+.+... +-+
T Consensus 509 ~~ViGQd~AI~~vs~ai~rsraGl~~~~rPigsFlf~GPTGvGKTElAK~LA~~LFg~e~~liR~DMSEy~E~hsvsrLI 588 (823)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFIFCGPTGVGKTELTKALASYFFGSEEAMIRLDMSEYMEKHTVSKLI 588 (823)
T ss_pred HHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHC
T ss_conf 78407699999999999999708998999746899878998877999999999974782025885351015542076745
Q ss_pred -----------HHHHHHH---HCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCC
Q ss_conf -----------6666641---01637888757616989999999986347510025678765200046674005520455
Q gi|254780552|r 97 -----------AALLTNL---EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTR 162 (334)
Q Consensus 97 -----------~~~~~~~---~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~ 162 (334)
-+.++.. ++.+|+++|||...++.+++.||..|++|+++=-.| .++++.. |+|-.|++
T Consensus 589 GaPPGYVGy~eGG~LTeaVrr~PysVvLfDEIEKAHpdV~nilLQvlDdG~LtD~~G-------r~vdF~N-tIIImTSN 660 (823)
T CHL00095 589 GSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKG-------RTIDFKN-TLIIMTSN 660 (823)
T ss_pred CCCCCCCCCCCCCCHHHHHHCCCCEEEEECHHHHCCHHHHHHHHHHCCCCCCCCCCC-------CEEECEE-EEEEECCC
T ss_conf 899876677878820198871998699862131138899998876516884348999-------9884310-39997165
Q ss_pred CC----------------------------------------CCCHHHHHCCCCEEECCCCCHHHHHHHHHHHHHH----
Q ss_conf 43----------------------------------------3554544201206732645479999987776541----
Q gi|254780552|r 163 VG----------------------------------------LLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKL---- 198 (334)
Q Consensus 163 ~~----------------------------------------~l~~~l~sR~~~~~~~~~~~~~el~~il~~~~~~---- 198 (334)
.+ ...|.++.|+.-++.|++++.+++.+|+....+.
T Consensus 661 lGs~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFlnRiDeii~F~~L~~~~l~~Iv~~~l~~l~~r 740 (823)
T CHL00095 661 LGSKVIEKGGGSLGFKLLEDGTKLDEKQYKRLSNLVNEELKQYFRPEFLNRLDEIIVFRPLTKDEVWEIAEIMLKELFKR 740 (823)
T ss_pred CCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHH
T ss_conf 05588874134434333445432202358999999999998437987873278278618999999999999999999999
Q ss_pred -----CCCHHHHHHHHHHHCCCC---CCHHHHHHHHH
Q ss_conf -----210111111123320221---01567887775
Q gi|254780552|r 199 -----TGLAVTDEAACEIAMRSR---GTPRIAGRLLR 227 (334)
Q Consensus 199 -----~~i~~~~~al~~ia~~s~---Gd~R~AlnlLe 227 (334)
..+.+++++..+|+..+- -.+|-.-+..+
T Consensus 741 l~~~~i~l~~~~~a~~~l~~~gy~~~~GARpl~R~I~ 777 (823)
T CHL00095 741 LNNQGIQLEVDERFKTLLAKEGYNPLYGARPLRRAIM 777 (823)
T ss_pred HHHCCCEEEECHHHHHHHHHHCCCCCCCCHHHHHHHH
T ss_conf 9968985998889999999958797768136889999
No 123
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.69 E-value=9.3e-16 Score=115.86 Aligned_cols=205 Identities=22% Similarity=0.254 Sum_probs=135.4
Q ss_pred HCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCC---CCCCCCCCCCCHHHH----------
Q ss_conf 2397999999999999866146776707997378855778999999861898---531257644334676----------
Q gi|254780552|r 30 FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN---FRSTSGPVIAKAGDL---------- 96 (334)
Q Consensus 30 viGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~---~~~~s~~~~~~~~dl---------- 96 (334)
=-.++++...+...+... +.+ ++++|++|+||||+.+.+.+.++.+ +..+..+.++ +.|+
T Consensus 25 s~~h~~al~~L~~~l~~~----~g~--~lltGe~GtGKTtllr~l~~~l~~~~~~~~~i~~~~l~-~~~ll~~i~~~lg~ 97 (269)
T TIGR03015 25 SKGHKRAMAYLEYGLSQR----EGF--ILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVD-AEDLLRMVAADFGL 97 (269)
T ss_pred CHHHHHHHHHHHHHHHCC----CCE--EEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCC-HHHHHHHHHHHCCC
T ss_conf 866999999999999648----965--99972998988999999998459345489997699999-99999999998598
Q ss_pred --------------HHHH---HHHHCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEEC
Q ss_conf --------------6666---64101637888757616989999999986347510025678765200046674005520
Q gi|254780552|r 97 --------------AALL---TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAA 159 (334)
Q Consensus 97 --------------~~~~---~~~~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~A 159 (334)
...+ ..-+.+.||+|||+|.++...-+.|...++ + +..+.+.. .+.|+|-
T Consensus 98 ~~~~~~~~~~~~~l~~~L~~~~~~g~~~vliIDEAq~L~~~~Le~Lr~L~n-~-------e~~~~~ll-----~iiL~Gq 164 (269)
T TIGR03015 98 ETEGRDKAALLRELEDFLIEQFAAGKRALLVVDEAQNLTPELLEELRMLSN-F-------QTDNAKLL-----QIFLVGQ 164 (269)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHCCHHHHHHHHHHHC-C-------CCCCCCCE-----EEEEECC
T ss_conf 988989999999999999999966994699972422199999999999970-1-------35888704-----8999578
Q ss_pred CCCCCCC----CHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCC----CHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 4554335----5454420120673264547999998777654121----0111111123320221015678877754333
Q gi|254780552|r 160 TTRVGLL----TNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTG----LAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231 (334)
Q Consensus 160 Tt~~~~l----~~~l~sR~~~~~~~~~~~~~el~~il~~~~~~~~----i~~~~~al~~ia~~s~Gd~R~AlnlLe~v~d 231 (334)
..=..+| ..++.+|....+++.+++.+|...-++...+.-| .-++++|+..|.+.|+|-||.-.++...+--
T Consensus 165 peL~~~L~~~~~~~l~qRI~~~~~L~pl~~eet~~YI~~RL~~AG~~~~~~Ft~~A~~~I~~~S~G~PR~IN~Lc~~aLl 244 (269)
T TIGR03015 165 PEFRETLQSPQLQQLRQRIIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRLLL 244 (269)
T ss_pred HHHHHHHCCCCHHHHHHCEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 67999872740254555076799847999899999999999866999999859999999999869900899999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 45541588642778787654210
Q gi|254780552|r 232 FAEVAHAKTITREIADAALLRLA 254 (334)
Q Consensus 232 ~a~~~~~~~i~~~~~~~~l~~~~ 254 (334)
.|...+...|+.+++++++.-++
T Consensus 245 ~a~~~~~~~I~~~~v~~~~~el~ 267 (269)
T TIGR03015 245 SAFLEEKREIGGEEVREVIAEID 267 (269)
T ss_pred HHHHHCCCCCCHHHHHHHHHHHC
T ss_conf 99994888679999999999762
No 124
>KOG2680 consensus
Probab=99.69 E-value=3e-16 Score=118.91 Aligned_cols=126 Identities=24% Similarity=0.250 Sum_probs=100.1
Q ss_pred CHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCC------------CCCCCHHHHHCC
Q ss_conf 37888757616989999999986347510025678765200046674005520455------------433554544201
Q gi|254780552|r 107 DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTR------------VGLLTNPLQDRF 174 (334)
Q Consensus 107 ~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~------------~~~l~~~l~sR~ 174 (334)
.||||||+|+|.-..+..|-.++|+- +.|. +|-|||+ |+-||--++||.
T Consensus 290 GVLFIDEvHMLDIEcFsFlNrAlE~d------------------~~Pi-iimaTNrgit~iRGTn~~SphGiP~D~lDR~ 350 (454)
T KOG2680 290 GVLFIDEVHMLDIECFSFLNRALEND------------------MAPI-IIMATNRGITRIRGTNYRSPHGIPIDLLDRM 350 (454)
T ss_pred CEEEEEEEHHHHHHHHHHHHHHHHHC------------------CCCE-EEEECCCCEEEEECCCCCCCCCCCHHHHHHH
T ss_conf 51787400211157999888876504------------------6857-9997277557760577789888867776441
Q ss_pred CCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 206732645479999987776541210111111123320221-015678877754333455415886427787876542
Q gi|254780552|r 175 GIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSR-GTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 (334)
Q Consensus 175 ~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~-Gd~R~AlnlLe~v~d~a~~~~~~~i~~~~~~~~l~~ 252 (334)
+++...||+.+|+.+|++-.|+.+++.++++|++.+...+. -+.|-|++++-.....|.-.+...+..++++.+..+
T Consensus 351 -lII~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk~~~v~~~di~r~y~L 428 (454)
T KOG2680 351 -LIISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKRKGKVVEVDDIERVYRL 428 (454)
T ss_pred -HEEECCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHH
T ss_conf -255256576889999987550052133587899999986131237899999889999998754856544678999999
No 125
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.68 E-value=1.3e-15 Score=115.00 Aligned_cols=201 Identities=18% Similarity=0.212 Sum_probs=136.1
Q ss_pred CCCHHHHC-CHH-HHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCC---CCCCCCCCCCCCCHHHHHH
Q ss_conf 89877823-979-999999999998661467767079973788557789999998618---9853125764433467666
Q gi|254780552|r 24 PRTLEEFT-GQV-EACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG---VNFRSTSGPVIAKAGDLAA 98 (334)
Q Consensus 24 P~~l~dvi-GQ~-~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~---~~~~~~s~~~~~~~~dl~~ 98 (334)
+.+|+.|| |.. .+...++..+ .. ++-..+.+|||+|+|||-|.++++++.. .....+.... ...-...
T Consensus 18 ~~tfdnFi~g~n~~~~~al~~~~---~~--~~~~~l~l~G~~G~GKTHLLqA~~~~~~~~~~~~~yl~~~~--~~~~~~~ 90 (235)
T PRK08084 18 DETFASFYPGDNDSLLAALQNVL---RQ--EHSGYIYLWGREGAGRSHLLHAACAELSQRGDAVGYVPLDK--RAWFVPE 90 (235)
T ss_pred CCCHHCCCCCCCHHHHHHHHHHH---HC--CCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEHHH--HHHHHHH
T ss_conf 76630234488699999999998---57--89876999899998889999999999970798579987798--6651799
Q ss_pred HHHHHHCCCHHHHHHHHHCC--HHHHHHHHHH----HHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCCCCC---CHH
Q ss_conf 66641016378887576169--8999999998----63475100256787652000466740055204554335---545
Q gi|254780552|r 99 LLTNLEDRDVLFIDEIHRLS--IIVEEILYPA----MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL---TNP 169 (334)
Q Consensus 99 ~~~~~~~~~vlfiDEihrl~--~~~q~~Ll~~----mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~~~l---~~~ 169 (334)
++..+..-+++.||.||.+. ...|++|+-. ++.++.- .++.+..-|..+ .+-
T Consensus 91 ~l~~l~~~dll~iDDi~~i~g~~~~ee~lF~l~N~~~~~g~~~-------------------ll~ts~~~P~~l~~~l~D 151 (235)
T PRK08084 91 VLEGMEQLSLVCIDNIECIAGDELWEMAIFDLYNRILESGKTR-------------------LLITGDRPPRQLNLGLPD 151 (235)
T ss_pred HHHHHHHCCEEEEECHHHHCCCHHHHHHHHHHHHHHHHHCCCE-------------------EEEECCCCHHHCCCCCHH
T ss_conf 9987641898998274554699789999999999999848966-------------------999679882430231288
Q ss_pred HHHCC--CCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 44201--2067326454799999877765412101111111233202210156788777543334554158864277878
Q gi|254780552|r 170 LQDRF--GIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247 (334)
Q Consensus 170 l~sR~--~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~Gd~R~AlnlLe~v~d~a~~~~~~~i~~~~~~ 247 (334)
|+||| +.++++++++.++..+++++.+...|+.++++++.+|+++...|+|...+.|++.- .+.......||...++
T Consensus 152 L~SRl~~g~~~~i~~~dde~~~~iL~~~a~~rgl~l~~~V~~yl~~~~~R~~~~L~~~l~~Ld-~~Sl~~kr~iTip~vk 230 (235)
T PRK08084 152 LASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDREMRTLFMTLDQLD-KASITAQRKLTIPFVK 230 (235)
T ss_pred HHHHHHCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHH-HHHHHCCCCCCHHHHH
T ss_conf 999995697278559998999999999999739999989999999861588999999999999-9999819999999999
Q ss_pred HHHH
Q ss_conf 7654
Q gi|254780552|r 248 AALL 251 (334)
Q Consensus 248 ~~l~ 251 (334)
++++
T Consensus 231 evL~ 234 (235)
T PRK08084 231 EILK 234 (235)
T ss_pred HHHC
T ss_conf 9965
No 126
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=99.68 E-value=5.9e-16 Score=117.07 Aligned_cols=150 Identities=21% Similarity=0.226 Sum_probs=109.0
Q ss_pred CCCE-EEECCCCCCHHHHHHHHHHHCCCCCCC-------------CC-C--CCC-----------CCHHHHHHHHHHH--
Q ss_conf 6707-997378855778999999861898531-------------25-7--644-----------3346766666641--
Q gi|254780552|r 54 LDHV-LFVGPPGLGKTTLAQVVARELGVNFRS-------------TS-G--PVI-----------AKAGDLAALLTNL-- 103 (334)
Q Consensus 54 ~~h~-Lf~GPpG~GKTtlA~iiA~~l~~~~~~-------------~s-~--~~~-----------~~~~dl~~~~~~~-- 103 (334)
++|. ||.||+|+||.++|+.+|+.+-|.-.. +. + |.+ -++.+++.+...+
T Consensus 23 l~HA~L~~G~~G~Gk~~la~~~a~~llC~~~~~~~~Cg~C~~C~l~~~~~HPD~~~i~pe~~~~~I~IdqIR~l~~~~~~ 102 (334)
T PRK07993 23 GHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKLYE 102 (334)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 10467547999988999999999998189999999999997899986689998477534223455999999999999843
Q ss_pred ----HCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCCCCCCHHHHHCCCCEEE
Q ss_conf ----0163788875761698999999998634751002567876520004667400552045543355454420120673
Q gi|254780552|r 104 ----EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIR 179 (334)
Q Consensus 104 ----~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~~~l~~~l~sR~~~~~~ 179 (334)
+...|++||+++++|..++++||+.+|+ |.. .-+||..|+++..|.++++|||. +.+
T Consensus 103 ~~~~g~~kV~iI~~Ae~mn~~AaNaLLKtLEE----------Pp~--------~t~~iL~t~~~~~lLpTI~SRCq-~~~ 163 (334)
T PRK07993 103 HARLGGAKVVWLPDAALLTDAAANALLKTLEE----------PPE--------KTWFFLACREPARLLATLRSRCR-LHY 163 (334)
T ss_pred CCCCCCCEEEEECCHHHHCHHHHHHHHHHHCC----------CCC--------CEEEEEECCCHHHCCCHHHHHCC-CCC
T ss_conf 66569947999766777599999999986127----------998--------84999866985657238875230-415
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 264547999998777654121011111112332022101567887775
Q gi|254780552|r 180 LNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227 (334)
Q Consensus 180 ~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~Gd~R~AlnlLe 227 (334)
|.+++.+++.+-+.+. ...+++.+....+.++|.|-.|+.+++
T Consensus 164 ~~~~~~~~~~~wL~~~-----~~~~~~~~~~al~la~Gspl~A~~l~~ 206 (334)
T PRK07993 164 LAPPPEQYALTWLSRE-----VTMSQEALLAALRLSAGAPGAALALLQ 206 (334)
T ss_pred CCCCCHHHHHHHHHHH-----CCCCHHHHHHHHHHCCCCHHHHHHHHC
T ss_conf 8997999999999873-----689889999999984998999999825
No 127
>KOG0735 consensus
Probab=99.68 E-value=2.4e-16 Score=119.43 Aligned_cols=175 Identities=26% Similarity=0.319 Sum_probs=120.9
Q ss_pred CHHHHCCHHHHHHHHHHHHHHHHHC-----C---CCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC----H
Q ss_conf 8778239799999999999986614-----6---77670799737885577899999986189853125764433----4
Q gi|254780552|r 26 TLEEFTGQVEACSNLKVFIEAAKAR-----A---EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK----A 93 (334)
Q Consensus 26 ~l~dviGQ~~~~~~l~~~i~a~~~~-----~---~~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~~~~~~----~ 93 (334)
.|+|+-|..++++.++-.+++-.+- + .....+|+|||||||||-+|..+|.+.+..|+.+.||.+-. +
T Consensus 665 ~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIGa 744 (952)
T KOG0735 665 RWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIGA 744 (952)
T ss_pred CCEECCCHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCEEEEEECCHHHHHHHHCC
T ss_conf 71003358999999999985541036788608866655458877999857888888885378059982588999987450
Q ss_pred --HHHHHHHH--HHHCCCHHHHHHHHHCCHH-----------HHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEE
Q ss_conf --67666666--4101637888757616989-----------99999998634751002567876520004667400552
Q gi|254780552|r 94 --GDLAALLT--NLEDRDVLFIDEIHRLSII-----------VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIA 158 (334)
Q Consensus 94 --~dl~~~~~--~~~~~~vlfiDEihrl~~~-----------~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ 158 (334)
..++.++. .+...||||.||.+.+.+. .-+-||.-|+. +.. +.-++.++
T Consensus 745 SEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG------------~Eg----l~GV~i~a 808 (952)
T KOG0735 745 SEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDG------------AEG----LDGVYILA 808 (952)
T ss_pred CHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC------------CCC----CCEEEEEE
T ss_conf 07889999998651497489712102437666877777429999999876036------------334----45389997
Q ss_pred CCCCCCCCCHHHHH--CCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCC
Q ss_conf 04554335545442--012067326454799999877765412101111111233202210
Q gi|254780552|r 159 ATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRG 217 (334)
Q Consensus 159 ATt~~~~l~~~l~s--R~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~G 217 (334)
||+||..|.++|+. |+.-+..|.+++..|-.+|++......... ++--++.+|...+|
T Consensus 809 aTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~-~~vdl~~~a~~T~g 868 (952)
T KOG0735 809 ATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKD-TDVDLECLAQKTDG 868 (952)
T ss_pred ECCCCCCCCHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCC-CCCCHHHHHHHCCC
T ss_conf 3378343677662887654015679989289999999985345775-21016887652178
No 128
>TIGR00390 hslU heat shock protein HslVU, ATPase subunit HslU; InterPro: IPR004491 This family of proteins represent HslU, a bacterial clpX homolog, which is an ATPase and chaperone belonging to the AAA Clp/Hsp100 family and a component of the eubacterial proteasome. ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins. They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, ClpXP) complex in other eubacteria. Genes homologous to eubacterial HslV, IPR001353 from INTERPRO, (ClpQ,) and HslU (ClpY, ClpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa. They are expressed as precursors, with a propeptide that is removed to produce the active protease. The protease is probably located in the kinetoplast (mitochondrion). Phylogenetic analysis shows that HslV and HslU from trypanosomatids form a single clad with other eubacterial homologs . ; GO: 0005515 protein binding, 0005524 ATP binding, 0009377 HslUV protease activity, 0016887 ATPase activity, 0005737 cytoplasm, 0009376 HslUV protease complex.
Probab=99.68 E-value=4.7e-17 Score=123.78 Aligned_cols=222 Identities=27% Similarity=0.419 Sum_probs=149.8
Q ss_pred CHHHH-CCHHHHHHHHHHHHHHHHHCC--------C-CCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC---
Q ss_conf 87782-397999999999999866146--------7-7670799737885577899999986189853125764433---
Q gi|254780552|r 26 TLEEF-TGQVEACSNLKVFIEAAKARA--------E-ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK--- 92 (334)
Q Consensus 26 ~l~dv-iGQ~~~~~~l~~~i~a~~~~~--------~-~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~~~~~~--- 92 (334)
.||.+ |||+++|+.+.+++.+...|. + .+.++|+-||.|+|||-+||=|||-.+.||+.+-|+=++.
T Consensus 9 ~LD~yIiGQ~~AKk~VAiALrNRyrR~~L~~~L~~EV~PKNILMiGpTGVGKTEIARRlAKL~~aPFiKVEAtKfTEVGY 88 (463)
T TIGR00390 9 ELDKYIIGQDEAKKAVAIALRNRYRRSQLEEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGY 88 (463)
T ss_pred HHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECCE
T ss_conf 51442206366788999998866776128711135658743043278898544799999998448914666410011021
Q ss_pred --------HHHHH-------------------------------------------------------------------
Q ss_conf --------46766-------------------------------------------------------------------
Q gi|254780552|r 93 --------AGDLA------------------------------------------------------------------- 97 (334)
Q Consensus 93 --------~~dl~------------------------------------------------------------------- 97 (334)
+.||.
T Consensus 89 VGrdVeSmvRDL~~~aV~lV~~e~~~~~r~~aee~~~erI~~~L~pp~~n~sGvknPfe~f~~~~ePN~~~e~~~~~~~~ 168 (463)
T TIGR00390 89 VGRDVESMVRDLVDTAVKLVKEEKIEKVRDRAEEAAEERIVDKLLPPAKNQSGVKNPFEMFWGSEEPNEKDEEESSREAL 168 (463)
T ss_pred ECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHEECCCCCCHHHHHHHHHHHH
T ss_conf 42410036787899999999998899889999999988999872888988776667223000566874024689999999
Q ss_pred ---------------------------------------------------HHH--------------------------
Q ss_conf ---------------------------------------------------666--------------------------
Q gi|254780552|r 98 ---------------------------------------------------ALL-------------------------- 100 (334)
Q Consensus 98 ---------------------------------------------------~~~-------------------------- 100 (334)
.+|
T Consensus 169 ~~klr~r~ahqlalGeLDd~~iei~v~~~~pf~~~e~~~pp~~e~~~~~l~~~l~~l~~~~kkkr~l~ik~A~~~L~~Ee 248 (463)
T TIGR00390 169 RKKLRERMAHQLALGELDDKEIEIEVSAKSPFSGIEILAPPGMEEMTMNLQSLLQNLGPDKKKKRKLKIKEAKKALIAEE 248 (463)
T ss_pred HHHHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEECCCCHHHHHHHHHHHH
T ss_conf 99999987766303664671589986137871267505888556776789999862045320001145699999989998
Q ss_pred ---------------HHHHCCCHHHHHHHHHCCHH-------------HHHHHHHHHHCCCCCCCCCCCCCCCEEECCCC
Q ss_conf ---------------64101637888757616989-------------99999998634751002567876520004667
Q gi|254780552|r 101 ---------------TNLEDRDVLFIDEIHRLSII-------------VEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152 (334)
Q Consensus 101 ---------------~~~~~~~vlfiDEihrl~~~-------------~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~ 152 (334)
..+....|+|||||+...+. +|==|||.+|-=+|.+ +-- .++-.
T Consensus 249 ~~kL~d~e~~~~~A~~~vE~~GiiFIDEIDKIa~~~~e~S~~DvSrEGVQRDlLPiVEGS~V~T---KyG-----~VkTd 320 (463)
T TIGR00390 249 AAKLVDPEEIKQEAIDRVEQSGIIFIDEIDKIAKKGKESSGADVSREGVQRDLLPIVEGSTVNT---KYG-----SVKTD 320 (463)
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCEEEECCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE---ECC-----EEECC
T ss_conf 8733696664389999998478289853035421688867888765565101142022666431---001-----04221
Q ss_pred CCEEEECC----CCCCCCCHHHHHCCCCEEECCCCCHHHHHHHHHHH-----------HHHC--CCHHHHHHHHHHHCCC
Q ss_conf 40055204----55433554544201206732645479999987776-----------5412--1011111112332022
Q gi|254780552|r 153 RFTLIAAT----TRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG-----------AKLT--GLAVTDEAACEIAMRS 215 (334)
Q Consensus 153 ~f~lI~AT----t~~~~l~~~l~sR~~~~~~~~~~~~~el~~il~~~-----------~~~~--~i~~~~~al~~ia~~s 215 (334)
|..||+|- ..|.-|.|-|+-||.+...|+.+|.+++..||..- .+.+ ++.++++|++.||+.|
T Consensus 321 HiLFIAaGAF~lAKPSDLIPELQGRfPirVEL~~Lt~~d~~rIL~~p~~Sl~kQY~ALl~~eGv~i~F~d~AI~~iAe~a 400 (463)
T TIGR00390 321 HILFIAAGAFHLAKPSDLIPELQGRFPIRVELEALTVDDFERILTEPKNSLIKQYQALLKVEGVNIEFSDEAIKKIAELA 400 (463)
T ss_pred HHHHHHHHHHCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEECHHHHHHHHHHH
T ss_conf 57876752320277766663110667377876763299999962083436899999988762764033556899999999
Q ss_pred --------CCCHHHHHHHHHHHHH---H--HHHHCCC-CCCHHHHHHHHHHHHC
Q ss_conf --------1015678877754333---4--5541588-6427787876542100
Q gi|254780552|r 216 --------RGTPRIAGRLLRRVRD---F--AEVAHAK-TITREIADAALLRLAI 255 (334)
Q Consensus 216 --------~Gd~R~AlnlLe~v~d---~--a~~~~~~-~i~~~~~~~~l~~~~i 255 (334)
+=.+|+.=..+|++.+ | ....+.+ +||.+.|++.|+.+.-
T Consensus 401 y~~N~~teniGARRLHTv~E~lledisFea~D~~~~~~~I~~~YV~~kL~~~~~ 454 (463)
T TIGR00390 401 YNVNQKTENIGARRLHTVLERLLEDISFEAPDVSGQKVTITADYVEKKLGDLVA 454 (463)
T ss_pred HHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHHHHHHHHH
T ss_conf 981644233465046689999998751266686343245078999999878873
No 129
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.68 E-value=2.9e-16 Score=119.00 Aligned_cols=191 Identities=20% Similarity=0.278 Sum_probs=124.6
Q ss_pred HHHCCHHHHHHHHHHHHHHHHH----CCCCCCCEEEECCCCCCHHHHHHHHHHHC---CCCCCCCCCCCCCCH---HHHH
Q ss_conf 7823979999999999998661----46776707997378855778999999861---898531257644334---6766
Q gi|254780552|r 28 EEFTGQVEACSNLKVFIEAAKA----RAEALDHVLFVGPPGLGKTTLAQVVAREL---GVNFRSTSGPVIAKA---GDLA 97 (334)
Q Consensus 28 ~dviGQ~~~~~~l~~~i~a~~~----~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l---~~~~~~~s~~~~~~~---~dl~ 97 (334)
..||||++++..+..++.-++. .++|+.++||.||+|||||-+|+.+|..| ...++.++-+.+... +-+.
T Consensus 568 ~rViGQd~AI~~v~~aI~~sraGL~dp~rPiGsFLFlGPTGVGKTElAK~LA~~LF~~e~~liriDMSEy~E~hsVSrLi 647 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSVSRLV 647 (857)
T ss_pred HHHCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCHHHEEEECCHHHCCCHHHHHHC
T ss_conf 78528099999999999998638999999738999868987888999999999983893342562533211301276755
Q ss_pred ------------HHHHHH---HCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCC
Q ss_conf ------------666641---01637888757616989999999986347510025678765200046674005520455
Q gi|254780552|r 98 ------------ALLTNL---EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTR 162 (334)
Q Consensus 98 ------------~~~~~~---~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~ 162 (334)
+.++.. ++.+|+++|||...++.+++.||..|++|+++= ++..++++.. |+|..|++
T Consensus 648 GaPPGYVGy~eGG~LTeaVRr~PySVvLfDEIEKAHpdV~nilLQvlD~G~LtD-------~~Gr~vdF~N-tIIImTSN 719 (857)
T PRK10865 648 GAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTD-------GQGRTVDFRN-TVVIMTSN 719 (857)
T ss_pred CCCCCCCCCCCCCCHHHHHHHCCCEEEEEHHHHHHCHHHHHHHHHHHCCCEEEC-------CCCCEEEEEE-EEEEECCC
T ss_conf 899876675778811099981987788632576638589999998703683207-------9998885133-48996462
Q ss_pred CC--------------------------CCCHHHHHCCCCEEECCCCCHHHHHHHHHHHHH---------HCCCHHHHHH
Q ss_conf 43--------------------------355454420120673264547999998777654---------1210111111
Q gi|254780552|r 163 VG--------------------------LLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK---------LTGLAVTDEA 207 (334)
Q Consensus 163 ~~--------------------------~l~~~l~sR~~~~~~~~~~~~~el~~il~~~~~---------~~~i~~~~~a 207 (334)
.+ ...|.++.|+.-++.|++++.+++.+|+....+ ...+.+++++
T Consensus 720 ~Gs~~i~~~~~~~~~~~~~~~~~~~l~~~F~PEFlnRiD~iv~F~pL~~~~l~~Iv~~~l~~l~~rL~~~~i~l~~~~~a 799 (857)
T PRK10865 720 LGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQRLYKRLEERGYEIHISDEA 799 (857)
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_conf 33699986506556688999999999864798888237848982789999999999999999999999779849988899
Q ss_pred HHHHHCCCCC---CHHHHHHHH
Q ss_conf 1233202210---156788777
Q gi|254780552|r 208 ACEIAMRSRG---TPRIAGRLL 226 (334)
Q Consensus 208 l~~ia~~s~G---d~R~AlnlL 226 (334)
..+|+..+-. .+|-.-+++
T Consensus 800 ~~~l~~~gyd~~~GARpl~r~I 821 (857)
T PRK10865 800 LKLLSENGYDPVYGARPLKRAI 821 (857)
T ss_pred HHHHHHHCCCCCCCHHHHHHHH
T ss_conf 9999984889774713789999
No 130
>KOG0727 consensus
Probab=99.67 E-value=3.8e-16 Score=118.25 Aligned_cols=182 Identities=23% Similarity=0.327 Sum_probs=112.2
Q ss_pred CHHHHHCCCC-----CHHHHCCHHHHHHHHHHHHHHHHH--------CCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 0578750789-----877823979999999999998661--------467767079973788557789999998618985
Q gi|254780552|r 16 DADISLLRPR-----TLEEFTGQVEACSNLKVFIEAAKA--------RAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 (334)
Q Consensus 16 ~~~~~~lRP~-----~l~dviGQ~~~~~~l~~~i~a~~~--------~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~~ 82 (334)
|.-+..|+|. +..|+-|.+-.+..++.+++--.. .-.++..+|+|||||||||++|+.+|+.....|
T Consensus 138 dssi~ml~~~ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~f 217 (408)
T KOG0727 138 DSSISMLGPDEKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAF 217 (408)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHCCCHHE
T ss_conf 66430138777898641345662112899998883653078899970889986227757999757899999861261114
Q ss_pred CCCCCCCC------CCHHHHHHHHHHHHC--CCHHHHHHHHHCCH-----------HHHHHHHHH---HHCCCCCCCCCC
Q ss_conf 31257644------334676666664101--63788875761698-----------999999998---634751002567
Q gi|254780552|r 83 RSTSGPVI------AKAGDLAALLTNLED--RDVLFIDEIHRLSI-----------IVEEILYPA---MEDFQLDLMVGE 140 (334)
Q Consensus 83 ~~~s~~~~------~~~~dl~~~~~~~~~--~~vlfiDEihrl~~-----------~~q~~Ll~~---mE~~~i~i~~~~ 140 (334)
+.+.|+.+ +++.-++..+..+++ ..|+|||||+.+.. ..|-+|+.. |+.|.-
T Consensus 218 irvvgsefvqkylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq------ 291 (408)
T KOG0727 218 IRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQ------ 291 (408)
T ss_pred EEECCHHHHHHHHCCCCHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCC------
T ss_conf 46301899999855483899999998761698379862245676641244446318999999999975147676------
Q ss_pred CCCCCEEECCCCCCEEEECCCCCCCCCHHHHH--CCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHC
Q ss_conf 87652000466740055204554335545442--01206732645479999987776541210111111123320
Q gi|254780552|r 141 GPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAM 213 (334)
Q Consensus 141 ~~~a~~~~~~~~~f~lI~ATt~~~~l~~~l~s--R~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~ 213 (334)
+ ..+.+|.|||+..-+.++|+. |....+.|...+..+-.-+..-++.+.++.-+-+--..+++
T Consensus 292 ~----------~nvkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~r 356 (408)
T KOG0727 292 T----------TNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVAR 356 (408)
T ss_pred C----------CCEEEEEECCCCCCCCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHCC
T ss_conf 6----------6558998327555668766287643444357798546652227754310267854488987418
No 131
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.67 E-value=5.1e-16 Score=117.49 Aligned_cols=191 Identities=23% Similarity=0.259 Sum_probs=125.6
Q ss_pred HHHCCHHHHHHHHHHHHHHHHH----CCCCCCCEEEECCCCCCHHHHHHHHHHHC---CCCCCCCCCCCCCCHHH---HH
Q ss_conf 7823979999999999998661----46776707997378855778999999861---89853125764433467---66
Q gi|254780552|r 28 EEFTGQVEACSNLKVFIEAAKA----RAEALDHVLFVGPPGLGKTTLAQVVAREL---GVNFRSTSGPVIAKAGD---LA 97 (334)
Q Consensus 28 ~dviGQ~~~~~~l~~~i~a~~~----~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l---~~~~~~~s~~~~~~~~d---l~ 97 (334)
..||||++++..+..++..++. .++|+.++||.||+|||||.+|+.+|..| ...++.++.+.+..... +.
T Consensus 565 ~rViGQd~AI~~I~~aI~~sraGL~dp~rP~GsFlf~GptGvGKTELAKaLAe~Lfg~~~~LIriDMSEy~E~hsvsrLi 644 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVARLI 644 (852)
T ss_pred HHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEECHHHHCCHHHHHHHC
T ss_conf 89717099999999999999718888999745899867887768999999999985585206984304430122477855
Q ss_pred ------------HHHHH---HHCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCC
Q ss_conf ------------66664---101637888757616989999999986347510025678765200046674005520455
Q gi|254780552|r 98 ------------ALLTN---LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTR 162 (334)
Q Consensus 98 ------------~~~~~---~~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~ 162 (334)
+.++. -++.+|+++|||...++..++.||..|++|+++=- . ..++++.. |+|..|++
T Consensus 645 GaPPGYVGy~egG~Lte~vr~~PysVvL~DEIEKAh~~V~~~lLQilD~G~ltD~--~-----Gr~vdF~N-tiiimTSN 716 (852)
T TIGR03346 645 GAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDG--Q-----GRTVDFRN-TVIIMTSN 716 (852)
T ss_pred CCCCCCCCCCCCCEECHHHHHCCCEEEEECCHHHHCHHHHHHHHHHHCCCEEECC--C-----CCEEEEEE-EEEEEECC
T ss_conf 8999767768787423989819887998530543076899999988236743079--9-----98885355-68986154
Q ss_pred CC--------------------------CCCHHHHHCCCCEEECCCCCHHHHHHHHHHHHH---------HCCCHHHHHH
Q ss_conf 43--------------------------355454420120673264547999998777654---------1210111111
Q gi|254780552|r 163 VG--------------------------LLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK---------LTGLAVTDEA 207 (334)
Q Consensus 163 ~~--------------------------~l~~~l~sR~~~~~~~~~~~~~el~~il~~~~~---------~~~i~~~~~a 207 (334)
.+ ...|.++.|+.-++.|++++.+++.+|+....+ ...+.+++++
T Consensus 717 ~Ga~~i~~~~~~~~~~~~~~~~~~~~~~~F~PEflnRid~ii~F~~L~~~~l~~I~~~~l~~l~~~l~~~~i~l~~~~~~ 796 (852)
T TIGR03346 717 LGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGRLRKRLAERKITLELSDAA 796 (852)
T ss_pred CCHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_conf 06599974114555799999999999965899899637868983789999999999999999999999779849988899
Q ss_pred HHHHHCCCC---CCHHHHHHHH
Q ss_conf 123320221---0156788777
Q gi|254780552|r 208 ACEIAMRSR---GTPRIAGRLL 226 (334)
Q Consensus 208 l~~ia~~s~---Gd~R~AlnlL 226 (334)
.++|+..+- -.+|..-+.+
T Consensus 797 ~~~l~~~g~~~~~GAR~l~r~i 818 (852)
T TIGR03346 797 LDFLAEAGYDPVYGARPLKRAI 818 (852)
T ss_pred HHHHHHHCCCCCCCHHHHHHHH
T ss_conf 9999984889774715699999
No 132
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=2e-16 Score=120.01 Aligned_cols=203 Identities=26% Similarity=0.388 Sum_probs=128.9
Q ss_pred CHHHH-CCHHHHHHHHHHHHHHHHHC-------C---CCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHH
Q ss_conf 87782-39799999999999986614-------6---7767079973788557789999998618985312576443346
Q gi|254780552|r 26 TLEEF-TGQVEACSNLKVFIEAAKAR-------A---EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG 94 (334)
Q Consensus 26 ~l~dv-iGQ~~~~~~l~~~i~a~~~~-------~---~~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~~~~~~~~ 94 (334)
.||++ |||+.+|+.|.+++-.--+| + -.-+++|+.||.|+|||.||..+|+.++++|....|..++.++
T Consensus 58 ~Ld~YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAG 137 (408)
T COG1219 58 HLDEYVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAG 137 (408)
T ss_pred HHHHHEECCHHHHCEEEEEEEHHHHHHHCCCCCCCEEEEECCEEEECCCCCCHHHHHHHHHHHHCCCEEECCCCCHHHCC
T ss_conf 86524326254310346641068899860488776353203179988899757799999999848984751444121066
Q ss_pred ----HHHHHHH----HH------HCCCHHHHHHHHHCCHH--------------HHHHHHHHHHCCCCCCCC--C-CCCC
Q ss_conf ----7666666----41------01637888757616989--------------999999986347510025--6-7876
Q gi|254780552|r 95 ----DLAALLT----NL------EDRDVLFIDEIHRLSII--------------VEEILYPAMEDFQLDLMV--G-EGPS 143 (334)
Q Consensus 95 ----dl~~~~~----~~------~~~~vlfiDEihrl~~~--------------~q~~Ll~~mE~~~i~i~~--~-~~~~ 143 (334)
|+.+++. ++ .++.|++||||+.++|. .|.+||..+|.-...+-- + +-|+
T Consensus 138 YVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSen~SITRDVSGEGVQQALLKiiEGTvasVPPqGGRKHP~ 217 (408)
T COG1219 138 YVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQ 217 (408)
T ss_pred CCCHHHHHHHHHHHHHCCCCHHHHHCCEEEEECHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCEECCCCCCCCCCCC
T ss_conf 35500899999999876458888828859985102542057898723436735899999999707510239998887984
Q ss_pred CCEEECCCCCCEEEE--CC-------------------C------------------CCC-----CCCHHHHHCCCCEEE
Q ss_conf 520004667400552--04-------------------5------------------543-----355454420120673
Q gi|254780552|r 144 ARSVKINLSRFTLIA--AT-------------------T------------------RVG-----LLTNPLQDRFGIPIR 179 (334)
Q Consensus 144 a~~~~~~~~~f~lI~--AT-------------------t------------------~~~-----~l~~~l~sR~~~~~~ 179 (334)
-..+.++-....||. |- . +|. -+.|.+.-|+.++..
T Consensus 218 Qe~iqvDT~NILFIcgGAF~GlekiI~~R~~~~~iGF~a~~~~~~~~~~~~~~l~~vepeDLvkFGLIPEfIGRlPvia~ 297 (408)
T COG1219 218 QEFIQVDTSNILFICGGAFAGLEKIIKKRLGKKGIGFGAEVKSKSKKKEEGELLKQVEPEDLVKFGLIPEFIGRLPVIAT 297 (408)
T ss_pred CCEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHCCCCHHHHCCCCEEEE
T ss_conf 20488737634678244010399999986268742456644534444128899875486878870883887266632646
Q ss_pred CCCCCHHHHHHHHHH-----------HHHHCC--CHHHHHHHHHHHCCC--CC-CHHHHHHHHHH
Q ss_conf 264547999998777-----------654121--011111112332022--10-15678877754
Q gi|254780552|r 180 LNFYEIEDLKTIVQR-----------GAKLTG--LAVTDEAACEIAMRS--RG-TPRIAGRLLRR 228 (334)
Q Consensus 180 ~~~~~~~el~~il~~-----------~~~~~~--i~~~~~al~~ia~~s--~G-d~R~AlnlLe~ 228 (334)
++.++.++|..|+.. ..+.++ +.++++||..||+.+ ++ .+|-.=+++|.
T Consensus 298 L~~Lde~aLv~ILtePkNAlvKQYq~Lf~~d~V~L~F~~~AL~~IA~~A~~rkTGARGLRsI~E~ 362 (408)
T COG1219 298 LEELDEDALVQILTEPKNALVKQYQKLFEMDGVELEFTEEALKAIAKKAIERKTGARGLRSIIEE 362 (408)
T ss_pred HHHCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 10159999999972651789999999964469169974899999999999843353579999999
No 133
>KOG1970 consensus
Probab=99.67 E-value=2.3e-15 Score=113.47 Aligned_cols=202 Identities=20% Similarity=0.251 Sum_probs=127.1
Q ss_pred CCCCCCCCHHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCC--EEEECCCCCCHHHHHHHHHHHCCCCCCCCC
Q ss_conf 844441205787507898778239799999999999986614677670--799737885577899999986189853125
Q gi|254780552|r 9 SRNVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDH--VLFVGPPGLGKTTLAQVVARELGVNFRSTS 86 (334)
Q Consensus 9 ~~~~~~~~~~~~~lRP~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h--~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s 86 (334)
.+.....+.+.+..+|++++|+-=+..=++.++.|++........++| +|++||+||||||..+++++++|..+++.+
T Consensus 63 ~~~~d~~elW~eKy~P~t~eeLAVHkkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~ 142 (634)
T KOG1970 63 NEKEDEFELWVEKYKPRTLEELAVHKKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWS 142 (634)
T ss_pred CCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCEEEEEC
T ss_conf 87733332257760856288875517748999999999997453667607998579888713199999986480212304
Q ss_pred CCCCCC----------------HHHHHH---H---------HHHH-----HCCCHHHHHHHHHCC-----HHHHHHHHHH
Q ss_conf 764433----------------467666---6---------6641-----016378887576169-----8999999998
Q gi|254780552|r 87 GPVIAK----------------AGDLAA---L---------LTNL-----EDRDVLFIDEIHRLS-----IIVEEILYPA 128 (334)
Q Consensus 87 ~~~~~~----------------~~dl~~---~---------~~~~-----~~~~vlfiDEihrl~-----~~~q~~Ll~~ 128 (334)
.|..-+ ..++.. . +... +...+|+|||+.-.. ...|+.|..+
T Consensus 143 Npi~~~~~~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~d~~~~f~evL~~y 222 (634)
T KOG1970 143 NPINLKEPENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYRDDSETFREVLRLY 222 (634)
T ss_pred CCCCCCCCCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHCHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHH
T ss_conf 77665665554554400133036678999989999876231653133334675079850261444003699999999999
Q ss_pred HHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCCCCC-------CHH--HHHCCCCEEECCCCCHHHHHHHHHHHHHHC
Q ss_conf 63475100256787652000466740055204554335-------545--442012067326454799999877765412
Q gi|254780552|r 129 MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL-------TNP--LQDRFGIPIRLNFYEIEDLKTIVQRGAKLT 199 (334)
Q Consensus 129 mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~~~l-------~~~--l~sR~~~~~~~~~~~~~el~~il~~~~~~~ 199 (334)
.-.+.. |.+||.+--..+-. +.- ..-|.. .+.|+|....-+++.++++|..+
T Consensus 223 ~s~g~~------------------PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri~-~IsFNPIa~T~MKK~L~ric~~e 283 (634)
T KOG1970 223 VSIGRC------------------PLIFIITDSLSNGNNNQDRLFPKDIQEEPRIS-NISFNPIAPTIMKKFLKRICRIE 283 (634)
T ss_pred HHCCCC------------------CEEEEEECCCCCCCCCHHHHCHHHHHHCCCCC-EEEECCCCHHHHHHHHHHHHHHH
T ss_conf 845777------------------67999863535787634342426565335852-47615776799999999999986
Q ss_pred CCHHH------HHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 10111------1111233202210156788777543
Q gi|254780552|r 200 GLAVT------DEAACEIAMRSRGTPRIAGRLLRRV 229 (334)
Q Consensus 200 ~i~~~------~~al~~ia~~s~Gd~R~AlnlLe~v 229 (334)
..... ...+..|+..|.||.|.|+|.||.-
T Consensus 284 ~~~~s~~k~~~~~~v~~i~~~s~GDIRsAInsLQls 319 (634)
T KOG1970 284 ANKKSGIKVPDTAEVELICQGSGGDIRSAINSLQLS 319 (634)
T ss_pred CCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 266666767506799999875277399998775332
No 134
>KOG0652 consensus
Probab=99.67 E-value=7e-16 Score=116.63 Aligned_cols=180 Identities=25% Similarity=0.369 Sum_probs=117.3
Q ss_pred CCC-CHHHHCCHHHHHHHHHHHHHHHHHC-------C-CCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC--
Q ss_conf 789-8778239799999999999986614-------6-7767079973788557789999998618985312576443--
Q gi|254780552|r 23 RPR-TLEEFTGQVEACSNLKVFIEAAKAR-------A-EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA-- 91 (334)
Q Consensus 23 RP~-~l~dviGQ~~~~~~l~~~i~a~~~~-------~-~~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~~~~~-- 91 (334)
||. ..+|+-|.++.+..|-.++--...+ | .++..+|+|||||||||.+||..|...+..|..+.||-+-
T Consensus 165 kPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQM 244 (424)
T KOG0652 165 KPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQM 244 (424)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCHHHHHCCHHHHHH
T ss_conf 87432000325789999999886145656878874688899722765799975779999998740106887326477766
Q ss_pred ----CHHHHHHHHHHHH--CCCHHHHHHHHHCC-----------HHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCC
Q ss_conf ----3467666666410--16378887576169-----------899999999863475100256787652000466740
Q gi|254780552|r 92 ----KAGDLAALLTNLE--DRDVLFIDEIHRLS-----------IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRF 154 (334)
Q Consensus 92 ----~~~dl~~~~~~~~--~~~vlfiDEihrl~-----------~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f 154 (334)
+++-++..|.-++ ..+|+||||++.+. +..|-..|..+.. ++ |++.. ..+
T Consensus 245 fIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQ--LD-----GFss~------~~v 311 (424)
T KOG0652 245 FIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQ--LD-----GFSSD------DRV 311 (424)
T ss_pred HHCCHHHHHHHHHHHHHCCCCEEEEEECHHHHCCCCCCCCCCCCHHHHHHHHHHHHH--CC-----CCCCC------CCE
T ss_conf 533418899999987533498389973002323343653123438999999999986--04-----89975------626
Q ss_pred EEEECCCCCCCCCHHH-HH-CCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHH-HHHHHCCCCC
Q ss_conf 0552045543355454-42-01206732645479999987776541210111111-1233202210
Q gi|254780552|r 155 TLIAATTRVGLLTNPL-QD-RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEA-ACEIAMRSRG 217 (334)
Q Consensus 155 ~lI~ATt~~~~l~~~l-~s-R~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~a-l~~ia~~s~G 217 (334)
.+|+||++...+.|+| || |....+.|..++.+.-..|++-.+.+.++ .+++ ..++|+..++
T Consensus 312 KviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv--~~DvNfeELaRsTdd 375 (424)
T KOG0652 312 KVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNV--SDDVNFEELARSTDD 375 (424)
T ss_pred EEEEECCCCCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC--CCCCCHHHHHHCCCC
T ss_conf 7885216434348888644664444348899778988999886400577--888798998533356
No 135
>PRK05642 DNA replication initiation factor; Validated
Probab=99.66 E-value=2.4e-15 Score=113.36 Aligned_cols=205 Identities=22% Similarity=0.259 Sum_probs=138.0
Q ss_pred CCHHHHC-C-HHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHC---CCCCCCCCCCCCCCHHHHHHH
Q ss_conf 9877823-9-7999999999999866146776707997378855778999999861---898531257644334676666
Q gi|254780552|r 25 RTLEEFT-G-QVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL---GVNFRSTSGPVIAKAGDLAAL 99 (334)
Q Consensus 25 ~~l~dvi-G-Q~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l---~~~~~~~s~~~~~~~~dl~~~ 99 (334)
.+|+.|| | +..+...++.+.+... +...+.+.+|||+|+|||-|.++++++. +.....++...+. .....+
T Consensus 16 ~tfdnFi~g~N~~a~~~~~~l~~~~~--~~~~~~l~i~G~~G~GKTHLL~A~~~~~~~~~~~~~yl~~~~~~--~~~~~~ 91 (234)
T PRK05642 16 ATFANYYPGANAAALGYVERLCEADA--GWTESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELL--DRGPEL 91 (234)
T ss_pred CCHHCCCCCCCHHHHHHHHHHHHCCC--CCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHH--HHHHHH
T ss_conf 77303571875999999999876067--87788389988999988999999999998079967997899987--544999
Q ss_pred HHHHHCCCHHHHHHHHHCC--HHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCCC-CC---CHHHHHC
Q ss_conf 6641016378887576169--8999999998634751002567876520004667400552045543-35---5454420
Q gi|254780552|r 100 LTNLEDRDVLFIDEIHRLS--IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVG-LL---TNPLQDR 173 (334)
Q Consensus 100 ~~~~~~~~vlfiDEihrl~--~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~~-~l---~~~l~sR 173 (334)
+..+..-+++.||.||.+. +..|++|+.....-. ..+ . .++.+.+.++ .+ .+-|+||
T Consensus 92 ~~~l~~~d~l~IDDi~~i~g~~~~e~~lF~l~N~~~-----~~~-----------~-~llits~~~P~~l~~~l~DL~SR 154 (234)
T PRK05642 92 LDNLEQYELVCIDDLDVIAGKADWEEALFHLFNRLR-----DSG-----------R-RLLLAASKSPRELPVKLPDLKSR 154 (234)
T ss_pred HHHHHHCCEEEEECHHHHCCCHHHHHHHHHHHHHHH-----HCC-----------C-EEEEECCCCHHHHCCCHHHHHHH
T ss_conf 862422798989364554688599999999999999-----839-----------9-59995787955523001679999
Q ss_pred CC--CEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 12--0673264547999998777654121011111112332022101567887775433345541588642778787654
Q gi|254780552|r 174 FG--IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251 (334)
Q Consensus 174 ~~--~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~Gd~R~AlnlLe~v~d~a~~~~~~~i~~~~~~~~l~ 251 (334)
+. .++.+++++.++..+++++.+...|+.++++++.+|+++..-|+|...++|+++- .........||...+++++.
T Consensus 155 l~~~~~~~i~~l~d~~~~~iL~~~a~~rgi~l~~~v~~yl~~r~~R~~~~L~~~l~~Ld-~~sl~~kr~iTiplvk~vLg 233 (234)
T PRK05642 155 LTLALVFQMRGLSDEDKLRALQLRASRRGLHLTDEVGHFILTRGTRSMSALFDLLERLD-QASLQAQRKLTIPFLKETLG 233 (234)
T ss_pred HHCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHH-HHHHHHCCCCCHHHHHHHHC
T ss_conf 95781275148998999999999977546899989999999973588999999999999-99998389999999999838
No 136
>KOG0730 consensus
Probab=99.66 E-value=1.3e-14 Score=108.79 Aligned_cols=187 Identities=23% Similarity=0.330 Sum_probs=127.5
Q ss_pred CCCCCHHHHCCHHHHHHHHHHHHHHHHHC-------C-CCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC-
Q ss_conf 07898778239799999999999986614-------6-77670799737885577899999986189853125764433-
Q gi|254780552|r 22 LRPRTLEEFTGQVEACSNLKVFIEAAKAR-------A-EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK- 92 (334)
Q Consensus 22 lRP~~l~dviGQ~~~~~~l~~~i~a~~~~-------~-~~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~~~~~~- 92 (334)
+-|-. +++.|.......++.+++..... + .+...+|+|||||||||.+++.+|++.++.+..+++|.+-.
T Consensus 179 ~~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k 257 (693)
T KOG0730 179 LPEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISK 257 (693)
T ss_pred CCCCC-CCCCHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCEEEECCCHHHHHH
T ss_conf 14445-55413667788889988743016011443189999874443899998189999999973722574062899985
Q ss_pred -----HHHHHHHHHHH---HCCCHHHHHHHHHCCHHH----------HHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCC
Q ss_conf -----46766666641---016378887576169899----------999999863475100256787652000466740
Q gi|254780552|r 93 -----AGDLAALLTNL---EDRDVLFIDEIHRLSIIV----------EEILYPAMEDFQLDLMVGEGPSARSVKINLSRF 154 (334)
Q Consensus 93 -----~~dl~~~~~~~---~~~~vlfiDEihrl~~~~----------q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f 154 (334)
-+.++.++... +.+.++||||++.+.+.+ -..|+..|+.- ++. .+.
T Consensus 258 ~~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~--------~~~--------~~v 321 (693)
T KOG0730 258 FPGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGL--------KPD--------AKV 321 (693)
T ss_pred CCCCHHHHHHHHHHHHHCCCCCEEEEHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHC--------CCC--------CCE
T ss_conf 2463177899999998665998077587676237764333248889999999998527--------676--------746
Q ss_pred EEEECCCCCCCCCHHHHH-CCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCH-HHHHHHH
Q ss_conf 055204554335545442-01206732645479999987776541210111111123320221015-6788777
Q gi|254780552|r 155 TLIAATTRVGLLTNPLQD-RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTP-RIAGRLL 226 (334)
Q Consensus 155 ~lI~ATt~~~~l~~~l~s-R~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~Gd~-R~AlnlL 226 (334)
+.|+||+++..|.+++|- ||..-..+.-++..+-..|++..+++.+.. ++.-+..+|....|=. .+.-+++
T Consensus 322 ivl~atnrp~sld~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~-~~~~l~~iA~~thGyvGaDL~~l~ 394 (693)
T KOG0730 322 IVLAATNRPDSLDPALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLL-SDVDLEDIAVSTHGYVGADLAALC 394 (693)
T ss_pred EEEEECCCCCCCCHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCC-CHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 9997158855568565247885315744898335889999998616887-255689999873461478799999
No 137
>KOG0732 consensus
Probab=99.65 E-value=6.8e-16 Score=116.69 Aligned_cols=180 Identities=23% Similarity=0.313 Sum_probs=118.3
Q ss_pred CCHHHHCCHHHHHHHHHHHHHHHHH-------CCC-CCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCC-----CCC-C
Q ss_conf 9877823979999999999998661-------467-7670799737885577899999986189853125-----764-4
Q gi|254780552|r 25 RTLEEFTGQVEACSNLKVFIEAAKA-------RAE-ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTS-----GPV-I 90 (334)
Q Consensus 25 ~~l~dviGQ~~~~~~l~~~i~a~~~-------~~~-~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s-----~~~-~ 90 (334)
-+|+++-|.++++..|+..+-.-.. .+- ++.-+||+||||||||+.|+.+|.+....-..++ |.. +
T Consensus 262 v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD~l 341 (1080)
T KOG0732 262 VGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGADCL 341 (1080)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHCCCHHH
T ss_conf 68633345788899999988767640567641266898632302899872568888666540541102024431484433
Q ss_pred CC-H----HHHHHHHHHHH--CCCHHHHHHHHHCCHH---HHH--------HHHHHHHCCCCCCCCCCCCCCCEEECCCC
Q ss_conf 33-4----67666666410--1637888757616989---999--------99998634751002567876520004667
Q gi|254780552|r 91 AK-A----GDLAALLTNLE--DRDVLFIDEIHRLSII---VEE--------ILYPAMEDFQLDLMVGEGPSARSVKINLS 152 (334)
Q Consensus 91 ~~-~----~dl~~~~~~~~--~~~vlfiDEihrl~~~---~q~--------~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~ 152 (334)
++ + .+++-.+..++ ...|+|.|||+.+.+. .|| .||..|.. -.++ .
T Consensus 342 skwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdG----------ldsR------g 405 (1080)
T KOG0732 342 SKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDG----------LDSR------G 405 (1080)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC----------CCCC------C
T ss_conf 25447577889988988744485177305556646565366777445677778876047----------7777------8
Q ss_pred CCEEEECCCCCCCCCHHHHH--CCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHH
Q ss_conf 40055204554335545442--012067326454799999877765412101111111233202210156
Q gi|254780552|r 153 RFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPR 220 (334)
Q Consensus 153 ~f~lI~ATt~~~~l~~~l~s--R~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~Gd~R 220 (334)
++.+||||+++..+.+|||- ||...++|...+.+.-.+|+.....+-.=.+...-+..||..+-|-..
T Consensus 406 qVvvigATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~g 475 (1080)
T KOG0732 406 QVVVIGATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGG 475 (1080)
T ss_pred CEEEECCCCCCCCCCHHHCCCCCCCEEEEEECCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCH
T ss_conf 6589715678332465442886665257503786678889998751577788777899999886234005
No 138
>PRK08727 hypothetical protein; Validated
Probab=99.65 E-value=6.6e-15 Score=110.68 Aligned_cols=200 Identities=21% Similarity=0.206 Sum_probs=136.6
Q ss_pred CCHHHHC-CHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCC---CCCCCCCCCCCCCHHHHHHHH
Q ss_conf 9877823-979999999999998661467767079973788557789999998618---985312576443346766666
Q gi|254780552|r 25 RTLEEFT-GQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG---VNFRSTSGPVIAKAGDLAALL 100 (334)
Q Consensus 25 ~~l~dvi-GQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~---~~~~~~s~~~~~~~~dl~~~~ 100 (334)
.+|+.|| |.+.....+.... .++..+.+.+|||+|+|||-|+..++++.. .....+.... -......++
T Consensus 16 ~tfdnFi~~~n~~~a~l~~~~-----~~~~~~~lyl~G~~GsGKTHLl~a~~~~~~~~~~~~~yl~l~~--~~~~~~~~l 88 (233)
T PRK08727 16 QRFDSYIAAPDGLLAQLQALA-----AGQSSDWLYLSGPAGTGKTHLALSLCAAAEQAGRSSAYLPLQA--AAGRLRDAL 88 (233)
T ss_pred CCHHHCCCCCHHHHHHHHHHH-----CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHH--HHHHHHHHH
T ss_conf 242120678559999999874-----3888898999899999889999999999982799728844788--532025677
Q ss_pred HHHHCCCHHHHHHHHHCC--HHHHHHHHHH----HHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCCCCC---CHHHH
Q ss_conf 641016378887576169--8999999998----63475100256787652000466740055204554335---54544
Q gi|254780552|r 101 TNLEDRDVLFIDEIHRLS--IIVEEILYPA----MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL---TNPLQ 171 (334)
Q Consensus 101 ~~~~~~~vlfiDEihrl~--~~~q~~Ll~~----mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~~~l---~~~l~ 171 (334)
..+...+++.||.||.+. +.-|++|+-. .|.++- .++.+..-|..+ .+=|+
T Consensus 89 ~~le~~~ll~iDDid~i~g~~~~e~aLFhL~N~~~~~~~~--------------------ll~ts~~~P~~l~~~l~DL~ 148 (233)
T PRK08727 89 EALEGRSLVALDGVDSIAGQREDEVALFDFHNRARAAGIT--------------------LLYTARQMPDGLALVLPDLR 148 (233)
T ss_pred HHHCCCCEEEEECCHHCCCCHHHHHHHHHHHHHHHHCCCE--------------------EEEECCCCHHHHCCCHHHHH
T ss_conf 5310389789855011269827999999999999861983--------------------89977989566231002199
Q ss_pred HCCC--CEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 2012--06732645479999987776541210111111123320221015678877754333455415886427787876
Q gi|254780552|r 172 DRFG--IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAA 249 (334)
Q Consensus 172 sR~~--~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~Gd~R~AlnlLe~v~d~a~~~~~~~i~~~~~~~~ 249 (334)
||+. .++.+.+++.++...++.+.+...|+.++++++.+|+++..=|++...++++++ |.+.......||.-.++++
T Consensus 149 SRL~~~~~~~l~~~dD~~~~~iL~~~a~~rgl~l~~~V~~Yll~r~~R~~~~l~~~l~~L-D~~SL~~kr~iTip~vk~v 227 (233)
T PRK08727 149 SRLSQCIRIGLPVLDDVARAAVLRDRAQRRGLALDEAAIDWLLTHGERELAGLVALLDRL-DRESLAAKRRITVPFLRRV 227 (233)
T ss_pred HHHHCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHH-HHHHHHCCCCCCHHHHHHH
T ss_conf 999669228857889799999999999986999998999999985688999999999999-9999980898889999999
Q ss_pred HHH
Q ss_conf 542
Q gi|254780552|r 250 LLR 252 (334)
Q Consensus 250 l~~ 252 (334)
++.
T Consensus 228 L~e 230 (233)
T PRK08727 228 LEE 230 (233)
T ss_pred HHH
T ss_conf 972
No 139
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.65 E-value=4.2e-15 Score=111.88 Aligned_cols=180 Identities=24% Similarity=0.304 Sum_probs=117.6
Q ss_pred HHHCCHHHHHHHHHHHHHHHH----HCCCCCCCEEEECCCCCCHHHHHHHHHHHC-CC--CCCCCCCCCCCCHHH---HH
Q ss_conf 782397999999999999866----146776707997378855778999999861-89--853125764433467---66
Q gi|254780552|r 28 EEFTGQVEACSNLKVFIEAAK----ARAEALDHVLFVGPPGLGKTTLAQVVAREL-GV--NFRSTSGPVIAKAGD---LA 97 (334)
Q Consensus 28 ~dviGQ~~~~~~l~~~i~a~~----~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l-~~--~~~~~s~~~~~~~~d---l~ 97 (334)
..||||++++..+..++.-++ ..++|+.++||.||.|||||-+|+.+|..| |. .++.++-+.+..... +.
T Consensus 566 ~~ViGQ~~Av~~v~~ai~~sraGl~d~~rPigsFLFlGPTGVGKTElAK~LA~~LFg~e~~liR~DMSEy~E~hsvsrLi 645 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVSRLK 645 (852)
T ss_pred HHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEECCHHHCCHHHHHHHC
T ss_conf 99728499999999999998717999999856899878998778999999999971986114784224321043687863
Q ss_pred ------------HHHHH---HHCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCC
Q ss_conf ------------66664---101637888757616989999999986347510025678765200046674005520455
Q gi|254780552|r 98 ------------ALLTN---LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTR 162 (334)
Q Consensus 98 ------------~~~~~---~~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~ 162 (334)
+.++. -++.+|+++|||...++...+.||..|++|+++=- +..++++.. |+|-.|++
T Consensus 646 GaPPGYVGy~eGG~LTe~Vrr~PysVvLfDEIEKAHpdV~nilLQvlD~G~LtD~-------~Gr~vdF~N-tIIImTSN 717 (852)
T TIGR03345 646 GSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDG-------EGREIDFKN-TVILLTSN 717 (852)
T ss_pred CCCCCCCCCCCCCHHHHHHHHCCCEEEEECHHHHCCHHHHHHHHHHHCCCEEECC-------CCCEEECEE-EEEEECCC
T ss_conf 8999766748777210988809986888611300288999999987246777579-------999884521-29997572
Q ss_pred CC------------------------------CCCHHHHHCCCCEEECCCCCHHHHHHHHHHH--------HHH--CCCH
Q ss_conf 43------------------------------3554544201206732645479999987776--------541--2101
Q gi|254780552|r 163 VG------------------------------LLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG--------AKL--TGLA 202 (334)
Q Consensus 163 ~~------------------------------~l~~~l~sR~~~~~~~~~~~~~el~~il~~~--------~~~--~~i~ 202 (334)
.+ ...|.++.|+. ++.|.+++.+++.+|+... ..+ ..+.
T Consensus 718 ~Gs~~i~~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFlnRi~-ii~F~~L~~~~l~~Iv~~~l~~l~~rL~~~~~i~l~ 796 (852)
T TIGR03345 718 AGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMT-VIPYLPLDDDVLAAIVRLKLDRIARRLKENHGAELV 796 (852)
T ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCHHHHCCEE-EEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 4479998640376555668999999999998347988864566-897368999999999999999999999862896899
Q ss_pred HHHHHHHHHHCCCC
Q ss_conf 11111123320221
Q gi|254780552|r 203 VTDEAACEIAMRSR 216 (334)
Q Consensus 203 ~~~~al~~ia~~s~ 216 (334)
+++++..+|+..+-
T Consensus 797 ~~~~~~~~l~~~g~ 810 (852)
T TIGR03345 797 YSEALVEHIVARCT 810 (852)
T ss_pred ECHHHHHHHHHHCC
T ss_conf 88999999998289
No 140
>PRK06893 DNA replication initiation factor; Validated
Probab=99.64 E-value=5.4e-15 Score=111.18 Aligned_cols=199 Identities=21% Similarity=0.204 Sum_probs=135.6
Q ss_pred CCHHHHC-CHHH-HHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCC---CCCCCCCCCCCCCHHHH-HH
Q ss_conf 9877823-9799-99999999998661467767079973788557789999998618---98531257644334676-66
Q gi|254780552|r 25 RTLEEFT-GQVE-ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG---VNFRSTSGPVIAKAGDL-AA 98 (334)
Q Consensus 25 ~~l~dvi-GQ~~-~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~---~~~~~~s~~~~~~~~dl-~~ 98 (334)
.+|++|+ |... ++..++ +... ++.-+.+.+|||+|+|||-|..+++++.. .+...+. +...... ..
T Consensus 13 ~tfdnF~~~~n~~~~~~l~---~~~~--~~~~~~l~i~G~~gsGKTHLLqa~~~~~~~~~~~~~yi~---~~~~~~~~~~ 84 (229)
T PRK06893 13 ETLDNFYSDNNLLLLDSLR---KNFI--DLKQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIP---LSKSQYFSPA 84 (229)
T ss_pred CCHHCCCCCCHHHHHHHHH---HHCC--CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEE---HHHHHHCCHH
T ss_conf 6543154687499999999---7550--246987999899999889999999999997189859997---3775640699
Q ss_pred HHHHHHCCCHHHHHHHHHCC--HHHHHHHHHHH----HCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCCCCC---CHH
Q ss_conf 66641016378887576169--89999999986----3475100256787652000466740055204554335---545
Q gi|254780552|r 99 LLTNLEDRDVLFIDEIHRLS--IIVEEILYPAM----EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL---TNP 169 (334)
Q Consensus 99 ~~~~~~~~~vlfiDEihrl~--~~~q~~Ll~~m----E~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~~~l---~~~ 169 (334)
++.++...+++.||.||.+. +..|++|+..+ |.++- +.++.+..-|..+ .+-
T Consensus 85 ~l~~l~~~d~l~iDDi~~i~g~~~~e~~lF~l~N~l~~~~~~-------------------~ll~ss~~~p~~l~~~l~D 145 (229)
T PRK06893 85 VLENLEQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKESGKT-------------------LLLISANQSPHALQIKLPD 145 (229)
T ss_pred HHHHHHHCCEEEEECHHHHCCCHHHHHHHHHHHHHHHHCCCC-------------------EEEEECCCCHHHHCCHHHH
T ss_conf 998765479799967234248838999999999999975991-------------------7998579883322100267
Q ss_pred HHHCC--CCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 44201--2067326454799999877765412101111111233202210156788777543334554158864277878
Q gi|254780552|r 170 LQDRF--GIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247 (334)
Q Consensus 170 l~sR~--~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~Gd~R~AlnlLe~v~d~a~~~~~~~i~~~~~~ 247 (334)
|+||+ +.++++.+++.++...++.+.++..++.++++++.+|+++...|+|....+++.+ |.........||...++
T Consensus 146 L~SRl~~~~~~~i~~~dd~~~~~iL~~~a~~rgl~l~~~v~~yl~~r~~R~~~~l~~~l~~L-d~~sl~~kr~iTiplvk 224 (229)
T PRK06893 146 LASRLTWGEIYQLNDLTDEQKIEVLQRNAYQRGIELSDETANFLLKRLDRDMHTLFDALDLL-DKASLQAQRKLTIPFVK 224 (229)
T ss_pred HHHHHHCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHH-HHHHHHHCCCCCHHHHH
T ss_conf 99999688369966777579999999999964999998999999998347899999999999-99999808999999999
Q ss_pred HHHH
Q ss_conf 7654
Q gi|254780552|r 248 AALL 251 (334)
Q Consensus 248 ~~l~ 251 (334)
+++.
T Consensus 225 evL~ 228 (229)
T PRK06893 225 EILG 228 (229)
T ss_pred HHHC
T ss_conf 9868
No 141
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=99.64 E-value=3.8e-15 Score=112.15 Aligned_cols=148 Identities=21% Similarity=0.265 Sum_probs=102.7
Q ss_pred CCCCE-EEECCCCCCHHHHHHHHHHHCCCC--------CC------CC---CCCCC------------------------
Q ss_conf 76707-997378855778999999861898--------53------12---57644------------------------
Q gi|254780552|r 53 ALDHV-LFVGPPGLGKTTLAQVVARELGVN--------FR------ST---SGPVI------------------------ 90 (334)
Q Consensus 53 ~~~h~-Lf~GPpG~GKTtlA~iiA~~l~~~--------~~------~~---s~~~~------------------------ 90 (334)
.+||. ||+||.|+||.++|+.+|+.+-|+ |. .+ +-|.+
T Consensus 19 rl~HA~Lf~Gp~G~Gk~~lA~~~A~~llC~~~~~~~~~Cg~C~sC~~~~~~~HPD~~~i~Pe~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RWPHALLLHGQAGIGKLAFAQHLAQGLLCETPQPNGEPCGTCAACTWFAQGNHPDYRIVRPEALAAEAPGAADDAKAADA 98 (342)
T ss_pred CHHEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEECCCHHCCCCCCCCCHHHHHHH
T ss_conf 71305765799986799999999999838999988897867777888862799974553400210223332100101112
Q ss_pred -------------CCHHHHHHHHHHH------HCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCC
Q ss_conf -------------3346766666641------016378887576169899999999863475100256787652000466
Q gi|254780552|r 91 -------------AKAGDLAALLTNL------EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINL 151 (334)
Q Consensus 91 -------------~~~~dl~~~~~~~------~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~ 151 (334)
-++.+++.+...+ +...|++||.++++|...+++||..+|+ |..
T Consensus 99 ~~~~~~~~~~~~~I~idqiR~l~~~l~~~~~~g~~kVviI~~Ae~mn~~aaNalLK~LEE----------Pp~------- 161 (342)
T PRK06964 99 DEGGKKTRAPSKEIKIEQVRALLDFCGVGSHRGGARVVVLYPAEALNVAAANALLKTLEE----------PPP------- 161 (342)
T ss_pred HHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHCHHHHHHHHHHHCC----------CCC-------
T ss_conf 221012356556454999999999970075458844999827787389999999997237----------987-------
Q ss_pred CCCEEEECCCCCCCCCHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 7400552045543355454420120673264547999998777654121011111112332022101567887775
Q gi|254780552|r 152 SRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227 (334)
Q Consensus 152 ~~f~lI~ATt~~~~l~~~l~sR~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~Gd~R~AlnlLe 227 (334)
.-+||..|+++.+|.++++|||. .+.|.+++.+++...+.. .++. ++... ...++|.+..|+.+.+
T Consensus 162 -~~~~iL~~~~~~~llpTI~SRcq-~~~~~~~~~~~~~~~L~~----~~v~---~a~~l-la~a~G~p~~Al~l~~ 227 (342)
T PRK06964 162 -GVVFLLVSARIDRLLPTILSRCR-QWPMTVPAPEAAAAWLAA----QGVA---DANAL-LAEAGGAPLAALALAS 227 (342)
T ss_pred -CEEEEEEECCHHHCCHHHHHCCE-EECCCCCCHHHHHHHHHH----CCCC---CHHHH-HHHCCCCHHHHHHHHC
T ss_conf -84899986992548368876764-302899599999999987----3986---39999-9880999899998716
No 142
>TIGR00602 rad24 checkpoint protein rad24; InterPro: IPR004582 To be effective as a mechanism that preserves genomic integrity, the DNA damage checkpoint must be extremely sensitive in its ability to detect DNA damage. In Saccharomyces cerevisiae the Ddc1/Rad17/Mec3 complex and Rad24 are DNA damage checkpoint components which may promote checkpoint activation by "sensing" DNA damage directly . Rad24 shares sequence homology with RF-c, a protein that recognises DNA template/RNA primer hybrids during DNA replication. The Ddc1 complex has structural homology to proliferating-cell nuclear antigen (PCNA), which clamps onto DNA and confers processivity to DNA polymerases delta and epsilon. Rad24 is postulated to recognise DNA lesions and then recruit the Ddc1 complex to generate checkpoint signals. ; GO: 0006281 DNA repair, 0007049 cell cycle, 0005634 nucleus.
Probab=99.63 E-value=4.4e-15 Score=111.76 Aligned_cols=211 Identities=18% Similarity=0.345 Sum_probs=125.3
Q ss_pred CCCCCCHHHHHCCCCCHHHHCCHHHHHHHHHHHHHHH-----HHCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCC
Q ss_conf 4441205787507898778239799999999999986-----61467767079973788557789999998618985312
Q gi|254780552|r 11 NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAA-----KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRST 85 (334)
Q Consensus 11 ~~~~~~~~~~~lRP~~l~dviGQ~~~~~~l~~~i~a~-----~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~ 85 (334)
.....++|.+...|++..|+-=++.=+..++.|+.|. +.||..+ +|++|||||||||..+++||+++..+.+.
T Consensus 72 ~~d~~e~W~eKykP~~~~~lAvHK~Ki~~v~~wl~a~~Le~~~~rGGs~--LLi~GPsGCgKsT~~k~LsKelg~~~~ew 149 (670)
T TIGR00602 72 KEDRNELWVEKYKPETQEELAVHKKKIEEVEEWLKAQVLESAKKRGGSI--LLITGPSGCGKSTTIKILSKELGIKVQEW 149 (670)
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEE--EEEECCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 1357874410267542457766477799999997520020456677537--88417558844789999988864456554
Q ss_pred CCCCC-CCHHH----H---------------HHH----------HHHH--------HCCCHHHHHHHHHCC--------H
Q ss_conf 57644-33467----6---------------666----------6641--------016378887576169--------8
Q gi|254780552|r 86 SGPVI-AKAGD----L---------------AAL----------LTNL--------EDRDVLFIDEIHRLS--------I 119 (334)
Q Consensus 86 s~~~~-~~~~d----l---------------~~~----------~~~~--------~~~~vlfiDEihrl~--------~ 119 (334)
.-|.. ....| . .+. ..++ ....++||||+-.+| +
T Consensus 150 ~Np~~~~~~~n~~k~~~~~~~~f~~~PY~sq~e~f~efll~a~kY~~lQ~lG~~~~~~kk~Il~e~lPhln~F~~d~~rr 229 (670)
T TIGR00602 150 LNPVLLKEQKNDEKDTLSLESKFSRFPYLSQIEVFSEFLLRATKYNKLQKLGDDLQTDKKLILVEDLPHLNKFYRDLDRR 229 (670)
T ss_pred HCCCCCCCCCCHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCHHHHCCCHHHH
T ss_conf 07878888851244442125402216763145546787642123466642141102475457721376402213661268
Q ss_pred HHHHHHH-HHHHCCCCC---CCCCCC-------CCCC-EEECCCCCCEEEECCCCCCCCCHHHHHCCCC-EEECCCCCHH
Q ss_conf 9999999-986347510---025678-------7652-0004667400552045543355454420120-6732645479
Q gi|254780552|r 120 IVEEILY-PAMEDFQLD---LMVGEG-------PSAR-SVKINLSRFTLIAATTRVGLLTNPLQDRFGI-PIRLNFYEIE 186 (334)
Q Consensus 120 ~~q~~Ll-~~mE~~~i~---i~~~~~-------~~a~-~~~~~~~~f~lI~ATt~~~~l~~~l~sR~~~-~~~~~~~~~~ 186 (334)
.++++|. .+...|.+- +++++- -++. ..-+ +.+|=+ .| .+..-|+.-|++ .+.|+|..+.
T Consensus 230 ~~~~vlr~~~~~~g~~pPlv~~~te~~~~nlegdNnq~kfGi---r~~F~~-~~---IM~~~il~~pr~~~i~FNPiapT 302 (670)
T TIGR00602 230 ALREVLRTKYVSEGRLPPLVIIITESELNNLEGDNNQDKFGI---RLLFPA-VT---IMNKEILEEPRVSNIKFNPIAPT 302 (670)
T ss_pred HHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCHHCCC---CCCCCH-HH---HHHHHHHCCCCCCCEECCCCCHH
T ss_conf 999999998623789883589971243444577555101041---013525-77---75266540776131001787178
Q ss_pred HHHHHHHHHHHHCC------CHH-HHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 99998777654121------011-111112332022101567887775433
Q gi|254780552|r 187 DLKTIVQRGAKLTG------LAV-TDEAACEIAMRSRGTPRIAGRLLRRVR 230 (334)
Q Consensus 187 el~~il~~~~~~~~------i~~-~~~al~~ia~~s~Gd~R~AlnlLe~v~ 230 (334)
=|.+.|.+++..+. +.. +...+..++..+.||.|+|||-||.-.
T Consensus 303 ~mkK~L~~I~~~e~~~~~~K~~~~~~~~ve~~c~~~~GDiRSAInsLQfs~ 353 (670)
T TIGR00602 303 LMKKFLNRIVTKEAKKKGEKILVPKKTSVEDLCQGESGDIRSAINSLQFSS 353 (670)
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 999985556213143467854466346899997106884788888888643
No 143
>KOG0739 consensus
Probab=99.63 E-value=1.4e-15 Score=114.70 Aligned_cols=180 Identities=23% Similarity=0.319 Sum_probs=112.7
Q ss_pred CCC-CHHHHCCHHHHHHHHHHHHHH-------HHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC--
Q ss_conf 789-877823979999999999998-------6614677670799737885577899999986189853125764433--
Q gi|254780552|r 23 RPR-TLEEFTGQVEACSNLKVFIEA-------AKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK-- 92 (334)
Q Consensus 23 RP~-~l~dviGQ~~~~~~l~~~i~a-------~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~~~~~~-- 92 (334)
+|. .|+||-|.+.+++.|+.++-- ......+...+||||||||||.-||+++|-|.|..|.++|.+.+..
T Consensus 127 KPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKW 206 (439)
T KOG0739 127 KPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKW 206 (439)
T ss_pred CCCCCHHHHCCCHHHHHHHHHHEEECCCCHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEHHHHHHHH
T ss_conf 89976233014056899987543500025354158877542578867999757799999874147706873017889987
Q ss_pred ---HHH-HHHHHHHH--HCCCHHHHHHHHHCCHH-----------HHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCE
Q ss_conf ---467-66666641--01637888757616989-----------99999998634751002567876520004667400
Q gi|254780552|r 93 ---AGD-LAALLTNL--EDRDVLFIDEIHRLSII-----------VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFT 155 (334)
Q Consensus 93 ---~~d-l~~~~~~~--~~~~vlfiDEihrl~~~-----------~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~ 155 (334)
..- +.+++..+ +..+|+|||||+.+... ...-||--| -+-|.+. ..+.
T Consensus 207 mGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQM--------qGVG~d~-------~gvL 271 (439)
T KOG0739 207 MGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQM--------QGVGNDN-------DGVL 271 (439)
T ss_pred HCCHHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCHHHHHHHHHHHHHHH--------HCCCCCC-------CCEE
T ss_conf 321799999999998734994798634444326887771177777777888764--------0666588-------8648
Q ss_pred EEECCCCCCCCCHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCC
Q ss_conf 55204554335545442012067326454799999877765412101111111233202210
Q gi|254780552|r 156 LIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRG 217 (334)
Q Consensus 156 lI~ATt~~~~l~~~l~sR~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~G 217 (334)
+.||||-|..|..++|.||.-.+.+...+...-..+.+-.....--.+++.-..++++..+|
T Consensus 272 VLgATNiPw~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeG 333 (439)
T KOG0739 272 VLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEG 333 (439)
T ss_pred EEECCCCCHHHHHHHHHHHHCCEECCCCCHHHHHHHHEECCCCCCCCCCHHHHHHHHHHCCC
T ss_conf 97237884367799998765023010873787655503204788641335669999764378
No 144
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.62 E-value=7.8e-14 Score=104.12 Aligned_cols=207 Identities=21% Similarity=0.253 Sum_probs=127.2
Q ss_pred CHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHC---CCCCCCCCCCCCCCH---HHH---
Q ss_conf 87782397999999999999866146776707997378855778999999861---898531257644334---676---
Q gi|254780552|r 26 TLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL---GVNFRSTSGPVIAKA---GDL--- 96 (334)
Q Consensus 26 ~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l---~~~~~~~s~~~~~~~---~dl--- 96 (334)
.+.++||+....+.+...+...-. .-.++|++|++||||+.+|+.|=..- +.+|+.++...+..- .++
T Consensus 136 ~~~~liG~S~~m~~v~~~i~~~a~---~~~pVLI~GE~GTGK~~~Ar~IH~~S~r~~~pfi~vnC~~~~~~~~e~eLFG~ 212 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGRLSR---SSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGH 212 (469)
T ss_pred CCCCCEECCHHHHHHHHHHHHHHC---CCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHHCC
T ss_conf 755654689999999999999858---89978998989826999999999748877999578767889977899997087
Q ss_pred ------------HHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCCC
Q ss_conf ------------66666410163788875761698999999998634751002567876520004667400552045543
Q gi|254780552|r 97 ------------AALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVG 164 (334)
Q Consensus 97 ------------~~~~~~~~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~~ 164 (334)
.+.+..++ +..||+|||+.|+...|..|+.+++++.+.-+ +. .+..+ ..|.+|++|+.+.
T Consensus 213 ~~gaf~ga~~~~~g~~e~a~-~GTLfLdeI~~L~~~~Q~kLl~~L~~~~~~~~-g~---~~~~~---~d~RiIaat~~~L 284 (469)
T PRK10923 213 EKGAFTGANTIRQGRFEQAD-GGTLFLDEIGDMPLDVQTRLLRVLADGQFYRV-GG---YAPVK---VDVRIIAATHQNL 284 (469)
T ss_pred CCCCCCCCCCCCCCCHHHCC-CCCEEHHHHHHCCHHHHHHHHHHHHCCCEEEC-CC---CCEEE---ECCEEEEECCCCH
T ss_conf 66787886424587366438-99265663664899999999999855937857-99---85122---1437997078799
Q ss_pred -------CCCHHHHHCCCC-EEECCCCC--HHHHHHH----HHHHHHHCC---CHHHHHHHHHHHCCC-CCCHHHHHHHH
Q ss_conf -------355454420120-67326454--7999998----777654121---011111112332022-10156788777
Q gi|254780552|r 165 -------LLTNPLQDRFGI-PIRLNFYE--IEDLKTI----VQRGAKLTG---LAVTDEAACEIAMRS-RGTPRIAGRLL 226 (334)
Q Consensus 165 -------~l~~~l~sR~~~-~~~~~~~~--~~el~~i----l~~~~~~~~---i~~~~~al~~ia~~s-~Gd~R~AlnlL 226 (334)
.+..-|..|+.. .+.+.++. .+|+..+ +.+.++..+ ..++++|+..+..+. -|+.|-.-|.+
T Consensus 285 ~~~v~~g~Fr~dLyyrL~~~~I~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvrEL~n~i 364 (469)
T PRK10923 285 EQRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTC 364 (469)
T ss_pred HHHHHHCCHHHHHHHHHHHHCCCCCCHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf 99866081779999864424015846544653499999999999999859997878999999997499998799999999
Q ss_pred HHHHHHHHHHCCCCCCHHHH
Q ss_conf 54333455415886427787
Q gi|254780552|r 227 RRVRDFAEVAHAKTITREIA 246 (334)
Q Consensus 227 e~v~d~a~~~~~~~i~~~~~ 246 (334)
+++.-.+ ....|+.+++
T Consensus 365 er~~~~~---~~~~i~~~dl 381 (469)
T PRK10923 365 RWLTVMA---AGQEVLIQDL 381 (469)
T ss_pred HHHHHHC---CCCCCCHHHC
T ss_conf 9999857---9982547757
No 145
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=99.62 E-value=1.7e-14 Score=108.15 Aligned_cols=178 Identities=11% Similarity=0.027 Sum_probs=128.1
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHCCCC-----C------CCCCC---CCC---------CCHHHHHHHHHH-----H--
Q ss_conf 6707997378855778999999861898-----5------31257---644---------334676666664-----1--
Q gi|254780552|r 54 LDHVLFVGPPGLGKTTLAQVVARELGVN-----F------RSTSG---PVI---------AKAGDLAALLTN-----L-- 103 (334)
Q Consensus 54 ~~h~Lf~GPpG~GKTtlA~iiA~~l~~~-----~------~~~s~---~~~---------~~~~dl~~~~~~-----~-- 103 (334)
.+.+|+.|++||||--++..+|+.+=|. | ..+.+ |.+ -++.+++.+... .
T Consensus 8 ~halLl~~~~G~~~~~~~~~~~k~LlC~~~~~PCG~C~sC~~i~~g~HPD~~~i~pe~~sIkieqir~li~~l~~~s~e~ 87 (262)
T PRK05818 8 THPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSVES 87 (262)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 85056644877646999999999862289999998886278675589997799716645577989999999982114002
Q ss_pred HCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCCCCCCHHHHHCCCCEEECCCC
Q ss_conf 01637888757616989999999986347510025678765200046674005520455433554544201206732645
Q gi|254780552|r 104 EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183 (334)
Q Consensus 104 ~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~~~l~~~l~sR~~~~~~~~~~ 183 (334)
+.+.|++|+++|+++..++++||..+|+ |.. .-.||+.|.++..+.+.++|||- +..+.+.
T Consensus 88 ~g~KV~II~~Ae~Mt~~AANALLKtLEE----------Pp~--------nt~fIL~t~~~~~LLPTIrSRC~-~~~~~~~ 148 (262)
T PRK05818 88 NGKKIYIIYGIEKLNKQSANSLLKLIEE----------PPK--------NTYGIFTTRNENNILNTILSRCV-QYVVLSK 148 (262)
T ss_pred CCCEEEEECCHHHHCHHHHHHHHHHHCC----------CCC--------CEEEEEEECCHHHCCCHHHHHCC-CCCCCCH
T ss_conf 8848999877787499999999986128----------987--------83899973881437308887701-4466643
Q ss_pred CHHHHHHHHHHHHHHCCCHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 4799999877765412101111111233202-2101567887775433345541588642778787654210
Q gi|254780552|r 184 EIEDLKTIVQRGAKLTGLAVTDEAACEIAMR-SRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 (334)
Q Consensus 184 ~~~el~~il~~~~~~~~i~~~~~al~~ia~~-s~Gd~R~AlnlLe~v~d~a~~~~~~~i~~~~~~~~l~~~~ 254 (334)
..+.+.+...+....+.+..+....++++.. +.|+.|+++++|+ .+.++|.+.++.+.+...+..++
T Consensus 149 ~~~~~~~~~~~~~~~~~i~~~~~s~de~~~~~~~gs~~~~l~il~----~~i~~~n~~~~~~~~~~l~~~i~ 216 (262)
T PRK05818 149 EKKVPFKVESNDRYFQYILLSFYSVDEQLQAYNNGSFSKLKNIIE----TLINKKNKLIQIHKAWILFKTFS 216 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH----HHHHCCCCCEEHHHHHHHHHCCC
T ss_conf 466788887408889876410110799998861676888999999----99875688433999999983135
No 146
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit ClpA; InterPro: IPR013461 Proteins in this entry are related to ClpA () from Escherichia coli. ClpA is an ATP-dependent chaperone and part of the ClpAP protease that participates in regulatory protein degradation and the dissolution and degradation of protein aggregates . ClpA recognises sequences in specific proteins, which it then unfolds in an ATP-dependent manner and transports into the degradation chamber of the associated ClpP protein , . A small adaptor-like protein, ClpS, modulates the activity of ClpA and is an important regulatory factor for this protein . It protects ClpA from autodegradation and appears to redirect its activity away from soluble proteins and toward aggregated proteins..
Probab=99.62 E-value=2.5e-15 Score=113.23 Aligned_cols=252 Identities=21% Similarity=0.295 Sum_probs=157.7
Q ss_pred HCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHC----CCC-------CCCCC-CC
Q ss_conf 5078987782397999999999999866146776707997378855778999999861----898-------53125-76
Q gi|254780552|r 21 LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL----GVN-------FRSTS-GP 88 (334)
Q Consensus 21 ~lRP~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l----~~~-------~~~~s-~~ 88 (334)
+-|--.+|=+||=+..+++.-..++ .+..|+| ||.|-||||||.+|.=+|... .+| +..++ |.
T Consensus 201 ~A~~GkiDPLIGRE~EleRtiQvLC-RR~KNNP----l~VGEPGVGKTAI~EGLA~~I~~~~kvPe~Lkn~~IY~LDmG~ 275 (774)
T TIGR02639 201 KAKNGKIDPLIGREDELERTIQVLC-RRKKNNP----LLVGEPGVGKTAIVEGLAQRIAEGQKVPEVLKNAKIYSLDMGT 275 (774)
T ss_pred HHHCCCCCCCCCCHHHHHHHHHHHC-CCCCCCC----CEECCCCCCHHHHHHHHHHHHHCCCCCCHHHCCCCEEEECHHH
T ss_conf 9860887873456688742333203-4567887----2044888644899999999864156467002478345404345
Q ss_pred CCCC---HHH----HHHHHHHH--HCCC-HHHHHHHHHC---------CHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEC
Q ss_conf 4433---467----66666641--0163-7888757616---------98999999998634751002567876520004
Q gi|254780552|r 89 VIAK---AGD----LAALLTNL--EDRD-VLFIDEIHRL---------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKI 149 (334)
Q Consensus 89 ~~~~---~~d----l~~~~~~~--~~~~-vlfiDEihrl---------~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~ 149 (334)
.+-+ -|| |.+++..+ .++- ||||||||.+ +=.+-+.|=|++.+|.|
T Consensus 276 LLAGTKYRGDFE~RLK~V~~Ei~~~~~anILFIDEIHTIVGAGATSGGsmDASNLLKPaL~~G~i--------------- 340 (774)
T TIGR02639 276 LLAGTKYRGDFEERLKAVVSEIEKEPNANILFIDEIHTIVGAGATSGGSMDASNLLKPALASGKI--------------- 340 (774)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCEEECCCCCCHHHHHHHHHHHHHHCCCE---------------
T ss_conf 64102454247899999999985289995466411010331787875155244321125307877---------------
Q ss_pred CCCCCEEEECCCCCC--C---CCHHHHHCCCCEEECCCCCHHHHHHHHHHH----HHHCCCHHHHHHHHHHHCCC-----
Q ss_conf 667400552045543--3---554544201206732645479999987776----54121011111112332022-----
Q gi|254780552|r 150 NLSRFTLIAATTRVG--L---LTNPLQDRFGIPIRLNFYEIEDLKTIVQRG----AKLTGLAVTDEAACEIAMRS----- 215 (334)
Q Consensus 150 ~~~~f~lI~ATt~~~--~---l~~~l~sR~~~~~~~~~~~~~el~~il~~~----~~~~~i~~~~~al~~ia~~s----- 215 (334)
-+|||||--. + =+.||--||. .+-..-+|.+|-.+||+.. -+..+|.++++|+..=|..|
T Consensus 341 -----RCIGsTTy~EY~~~FeKDrALsRRFQ-KIDv~EPs~eet~~ILkGLk~~YE~fH~V~Y~~eal~~Av~LS~ryI~ 414 (774)
T TIGR02639 341 -----RCIGSTTYEEYKNHFEKDRALSRRFQ-KIDVGEPSIEETVKILKGLKEQYEEFHHVKYSDEALEAAVELSARYIN 414 (774)
T ss_pred -----EEECCCCHHHHHCHHHCCCCCCCCCC-EECCCCCCHHHHHHHHHHHHHHHHCCCCEECCHHHHHHHHHHHHHHCC
T ss_conf -----86226524864111010202165423-311795788899999986554201325011386999999999888602
Q ss_pred -CCCHHHHHHHHHHHHHHH----HHHCCCC--------------CCHHHHHHHHHHH-HCCCCHHHHHH-HHHHHHHHHH
Q ss_conf -101567887775433345----5415886--------------4277878765421-00000046776-8899999975
Q gi|254780552|r 216 -RGTPRIAGRLLRRVRDFA----EVAHAKT--------------ITREIADAALLRL-AIDKMGFDQLD-LRYLTMIARN 274 (334)
Q Consensus 216 -~Gd~R~AlnlLe~v~d~a----~~~~~~~--------------i~~~~~~~~l~~~-~id~~Gl~~~d-~~~L~~l~~~ 274 (334)
|==|=.||-++.=+=.++ ....... |+...+++++..+ .|+..-.+..| +.-|+.|.+.
T Consensus 415 DRfLPDKAIDviDEaGA~~~l~~~~~~~~~eadekGleetalPev~~~diE~vvak~a~iP~~~~s~ddD~~~L~~L~~~ 494 (774)
T TIGR02639 415 DRFLPDKAIDVIDEAGAAFRLRAKAKKKANEADEKGLEETALPEVNVKDIEEVVAKMAKIPVKTVSSDDDREKLKNLEKE 494 (774)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHH
T ss_conf 57898543228899999999712027764320112530004787854449999988718994154264479887204476
Q ss_pred HC----CCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 18----66206999999828745674678999999834305
Q gi|254780552|r 275 FG----GGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311 (334)
Q Consensus 275 ~~----~g~~~~~~isA~~ks~RgS~~daa~~yL~r~g~~~ 311 (334)
.+ |=|. .|.++..+++ +.|.|+..
T Consensus 495 L~~kIfGQD~---AI~~lv~aiK----------~SrAGl~~ 522 (774)
T TIGR02639 495 LKAKIFGQDE---AIEQLVSAIK----------RSRAGLGE 522 (774)
T ss_pred HHCCCCCHHH---HHHHHHHHHH----------HHHHHCCC
T ss_conf 3013151589---9999999999----------98742477
No 147
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.62 E-value=2.6e-15 Score=113.16 Aligned_cols=204 Identities=17% Similarity=0.231 Sum_probs=135.3
Q ss_pred HCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHC----------CCCCCCCCCCCCCCHHHH---
Q ss_conf 2397999999999999866146776707997378855778999999861----------898531257644334676---
Q gi|254780552|r 30 FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL----------GVNFRSTSGPVIAKAGDL--- 96 (334)
Q Consensus 30 viGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l----------~~~~~~~s~~~~~~~~dl--- 96 (334)
+-|-++=...+..+++.+...+..=.-|-.+|.||||||...+-+-++| ...|+++||--+..|.+.
T Consensus 269 lpcRe~E~~~I~~Fie~~i~q~GtG~cLYISGVPGTGKTATV~eVIr~L~~~~~~~~lp~F~fVEINGMkLt~P~qaY~~ 348 (650)
T PTZ00112 269 ILGREKEAKEIRTFLETGIKQGGTGQILYISGVPGTGKTATVYMVIKELQNKKLKGQLPWFNLFEINGVNLVHPNAAYRV 348 (650)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCEECCCHHHHHHH
T ss_conf 77707899999999986411688665699978999980036999999999999708999815999736377987889999
Q ss_pred --------------------HHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEE
Q ss_conf --------------------666664101637888757616989999999986347510025678765200046674005
Q gi|254780552|r 97 --------------------AALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTL 156 (334)
Q Consensus 97 --------------------~~~~~~~~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~l 156 (334)
...+++-+..+||.+||++-|-...|+.||..++=-. -+++ ++++
T Consensus 349 L~e~Ltg~k~~~~~~A~~lL~k~F~~~r~p~VlLvDELD~LvTkkQ~VlYNLFdWPT-------~~~S--------kLIV 413 (650)
T PTZ00112 349 FYKKLFNKKPPNALNSYKELDKLFNNNRTPSILIVDEADYIVTKTQKVLFTLFDWPT-------KKNS--------KLIL 413 (650)
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHCCCCEEEECCCCCC-------CCCC--------EEEE
T ss_conf 999984898886789999999982689971899971577776367745777366889-------8887--------0799
Q ss_pred EE-C-CCC-CCCCCHHHHHCCCC-EEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCC---CCCCHHHHHHHHHHH
Q ss_conf 52-0-455-43355454420120-67326454799999877765412101111111233202---210156788777543
Q gi|254780552|r 157 IA-A-TTR-VGLLTNPLQDRFGI-PIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMR---SRGTPRIAGRLLRRV 229 (334)
Q Consensus 157 I~-A-Tt~-~~~l~~~l~sR~~~-~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~---s~Gd~R~AlnlLe~v 229 (334)
|+ | |-+ |..+.+-+.||+++ .+.|.||+.++|.+|+....+..+ .++++|+...|+. -.||+|.||.++.++
T Consensus 414 IaIANTMDLPERL~~RVsSRLGltRltF~PYt~~QL~eII~sRL~~~~-~f~~dAIQl~ARKVAavSGDARRALdICRRA 492 (650)
T PTZ00112 414 IIISNTMDLPYKMKPSCRSRLAFGRLVFSPYKYQQIEKVIKERLENCE-IIDHTALQLCARRVTNYSGDMRKALQICKLA 492 (650)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCEECCCCCCHHHHHHHHHHHHCCCC-CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 998506786065666655522885004399899999999999862677-7887899999888875031489999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 33455415886427787876542
Q gi|254780552|r 230 RDFAEVAHAKTITREIADAALLR 252 (334)
Q Consensus 230 ~d~a~~~~~~~i~~~~~~~~l~~ 252 (334)
.. ....+.|+..++.++.++
T Consensus 493 vE---~~~~~ki~~~~i~~a~n~ 512 (650)
T PTZ00112 493 FE---NKNGGKITPRDMTRASNM 512 (650)
T ss_pred HH---HCCCCEEEHHHHHHHHHH
T ss_conf 97---356873424899999888
No 148
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.62 E-value=1.4e-13 Score=102.64 Aligned_cols=251 Identities=18% Similarity=0.214 Sum_probs=144.0
Q ss_pred CHHHHCCHHHHHHHHHH-HHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHC---CCCCCCCCCCCCCCH---HHHH-
Q ss_conf 87782397999999999-999866146776707997378855778999999861---898531257644334---6766-
Q gi|254780552|r 26 TLEEFTGQVEACSNLKV-FIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL---GVNFRSTSGPVIAKA---GDLA- 97 (334)
Q Consensus 26 ~l~dviGQ~~~~~~l~~-~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l---~~~~~~~s~~~~~~~---~dl~- 97 (334)
+|++++|+......... +-.+++. -.++|+.|.+||||+++|+.|-++. +.+|+.++...+... .++-
T Consensus 323 ~f~~l~g~s~~~~~~~~~a~~~a~~----~~pVLI~GE~GtGKe~lAraIH~~S~r~~~pfv~vnC~ai~~~~~e~elfG 398 (639)
T PRK11388 323 TFDHMPQDSPQMRRLIHFGRQAAKS----SFPILLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLLPDEALAEEFLG 398 (639)
T ss_pred CHHHCCCCCHHHHHHHHHHHHHHCC----CCCEEEECCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHCC
T ss_conf 8554467999999999999999688----996898898981099999999955777899818987898984678998738
Q ss_pred -----------HHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCCC--
Q ss_conf -----------6666410163788875761698999999998634751002567876520004667400552045543--
Q gi|254780552|r 98 -----------ALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVG-- 164 (334)
Q Consensus 98 -----------~~~~~~~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~~-- 164 (334)
+.+..+ .+..||+|||+.|+...|..|+.+++++.+.-+ + ..+..+. ++-+|+||+.+-
T Consensus 399 ~~~~~~~~g~~g~~e~A-~gGTL~LdeI~~lp~~~Q~~LlrvL~~~~~~r~-g---~~~~~~v---dvRiiaat~~~l~~ 470 (639)
T PRK11388 399 SDRTDSENGRLSKFELA-HGGTLFLEKVEYLSVELQSALLQVLKTGVITRL-D---SRRLIPV---DVRVIATTTADLAM 470 (639)
T ss_pred CCCCCCCCCCCCHHHCC-CCCEEEECCHHHCCHHHHHHHHHHHHCCCEEEC-C---CCCEEEE---EEEEEEECCHHHHH
T ss_conf 77676434668624403-698288467264999999999999865937856-9---9946664---27999736450899
Q ss_pred -----CCCHHHHHCCC-CEEECCCCC--HHHHHHHHHH----HHHHC--CCHHHHHHHHHHHCCC-CCCHHHHHHHHHHH
Q ss_conf -----35545442012-067326454--7999998777----65412--1011111112332022-10156788777543
Q gi|254780552|r 165 -----LLTNPLQDRFG-IPIRLNFYE--IEDLKTIVQR----GAKLT--GLAVTDEAACEIAMRS-RGTPRIAGRLLRRV 229 (334)
Q Consensus 165 -----~l~~~l~sR~~-~~~~~~~~~--~~el~~il~~----~~~~~--~i~~~~~al~~ia~~s-~Gd~R~AlnlLe~v 229 (334)
.+..-|..|+. +.+.+.++. .+|+..++.. .+... .+.++++|+..+..+. -|+.|-.-|.++++
T Consensus 471 ~v~~g~fr~dLyyrl~~~~i~lPpLReR~~Di~~L~~~~l~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvrEL~nvl~~a 550 (639)
T PRK11388 471 LVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVSYRWPGNDFELRSVIENL 550 (639)
T ss_pred HHHCCCCHHHHHHHHHHHHCCCCCHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf 98749854999987674410573323253439999999999999971999998999999997289997999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHC----------CCCHHHHHHHH-HHHHHHHHHCCCCCHHHHHHHHHCCCCCC
Q ss_conf 33455415886427787876542100----------00004677688-99999975186620699999982874567
Q gi|254780552|r 230 RDFAEVAHAKTITREIADAALLRLAI----------DKMGFDQLDLR-YLTMIARNFGGGPVGIETISAGLSEPRDA 295 (334)
Q Consensus 230 ~d~a~~~~~~~i~~~~~~~~l~~~~i----------d~~Gl~~~d~~-~L~~l~~~~~~g~~~~~~isA~~ks~RgS 295 (334)
. .....+.|+.++....+..... ....+...++. +..+|.++ +|. ....+..++..|.|
T Consensus 551 ~---~~~~~~~I~~~~Lp~~~~~~~~~~~~~~~~~~~~~~l~~~Er~~I~~aL~~~-~gN---~s~aA~~LGIsR~T 620 (639)
T PRK11388 551 A---LSSDNGRIRLSDLPEHLFTEQATDDVSAPRLSTSLSLAELEKQAIINAAQVC-GGR---IQEMAALLGIGRTT 620 (639)
T ss_pred H---HHCCCCCCCHHHCCHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH-CCC---HHHHHHHHCCCHHH
T ss_conf 9---8389984267978087751577777776777765679999999999999994-997---99999998989999
No 149
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.61 E-value=3.8e-14 Score=106.02 Aligned_cols=257 Identities=17% Similarity=0.277 Sum_probs=148.8
Q ss_pred HCCCC-CHHHHC-CHHHHHHHHHHHHHHHHH----CCCCCCCEEEECCCCCCHHHHHHHHHHHCCCC---CCCCCCCCCC
Q ss_conf 50789-877823-979999999999998661----46776707997378855778999999861898---5312576443
Q gi|254780552|r 21 LLRPR-TLEEFT-GQVEACSNLKVFIEAAKA----RAEALDHVLFVGPPGLGKTTLAQVVARELGVN---FRSTSGPVIA 91 (334)
Q Consensus 21 ~lRP~-~l~dvi-GQ~~~~~~l~~~i~a~~~----~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~---~~~~s~~~~~ 91 (334)
.|.|+ +|+.|| |...-..- ..+...++. .+...-++.+||++|+|||-|.++|++++..+ ...+++..+.
T Consensus 103 ~lNp~ytFd~FVvG~~N~lA~-~aa~~va~~~~~~~g~~yNPLfIyG~~GlGKTHLL~AIgn~i~~~~~kV~Yvtae~F~ 181 (455)
T PRK12422 103 DVDPEMTFANFLVTPENDLPF-RILQEFAKVSEQGKGFPFNPIYLFGPEGSGKTHLMQAAVSALRESGGKILYVSSELFT 181 (455)
T ss_pred CCCCCCCCCCEEECCCCHHHH-HHHHHHHHCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECHHHHH
T ss_conf 689778355833158609999-9999998375535887678758878999978999999999853799869997499999
Q ss_pred C-------HHHHHHHHHHHHCCCHHHHHHHHHCCH--HHHHHHHHHH----HCCCCCCCCCCCCCCCEEECCCCCCEEEE
Q ss_conf 3-------467666666410163788875761698--9999999986----34751002567876520004667400552
Q gi|254780552|r 92 K-------AGDLAALLTNLEDRDVLFIDEIHRLSI--IVEEILYPAM----EDFQLDLMVGEGPSARSVKINLSRFTLIA 158 (334)
Q Consensus 92 ~-------~~dl~~~~~~~~~~~vlfiDEihrl~~--~~q~~Ll~~m----E~~~i~i~~~~~~~a~~~~~~~~~f~lI~ 158 (334)
+ .+++.........-+||+||.||-|.. ..|+-|+-.. +.++- .|.
T Consensus 182 ~~~v~ai~~~~~~~Fr~~yr~~DvLLIDDIQfl~gK~~tqeEff~tfN~L~~~~KQ---------------------IVi 240 (455)
T PRK12422 182 EHLVSAIRSGEMQRFRSFYRNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKL---------------------IVI 240 (455)
T ss_pred HHHHHHHHCCCHHHHHHHHHCCCEEEEEHHHHHHCCHHHHHHHHHHHHHHHHCCCE---------------------EEE
T ss_conf 99999997588999999996388776314788728488999999999999985996---------------------999
Q ss_pred CCCCCCC----CCHHHHHCC--CCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--
Q ss_conf 0455433----554544201--20673264547999998777654121011111112332022101567887775433--
Q gi|254780552|r 159 ATTRVGL----LTNPLQDRF--GIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVR-- 230 (334)
Q Consensus 159 ATt~~~~----l~~~l~sR~--~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~Gd~R~AlnlLe~v~-- 230 (334)
+..++|+ +.+-|+||| +++..+++++.+...+|+++.++..++.++++++.+||....++.|.....|.++.
T Consensus 241 tsDr~P~el~~l~~RL~SRf~~GL~v~I~~Pd~etr~~Il~~k~~~~~~~l~~ev~~~iA~~i~~niReLeGal~~l~~~ 320 (455)
T PRK12422 241 SSSYAPGDLKAMEERLISRFEWGIAIPIHPLTREGLRSFLMRQAEQLSIRIEETALDFLIQALSSNVKTLLHALTLLAKR 320 (455)
T ss_pred ECCCCHHHHHHHHHHHHHHHHCCEEECCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 68989576512689999886376132168999899999999999871888844689999999755179999999999999
Q ss_pred -HHHHHHCCCCCCHHHHHHHHHHH-HC-CCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCC---CHHHHHHHH
Q ss_conf -34554158864277878765421-00-0000467768899999975186620699999982874567---467899999
Q gi|254780552|r 231 -DFAEVAHAKTITREIADAALLRL-AI-DKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDA---IEDLIEPYM 304 (334)
Q Consensus 231 -d~a~~~~~~~i~~~~~~~~l~~~-~i-d~~Gl~~~d~~~L~~l~~~~~~g~~~~~~isA~~ks~RgS---~~daa~~yL 304 (334)
.++.. ....++.+.++..+... .- ....+.. -.+.++.+++|+=. .+.+.+.-|.- .+.-+--||
T Consensus 321 ~~~~~~-~~~~i~~~~~~~~l~d~~~~~~~~~it~--~~I~~~Va~~f~i~------~~dl~sk~R~k~iv~aRqiAMYL 391 (455)
T PRK12422 321 VAYKKL-SHQLLYEDDIKALLHDVLEAAESVRLTP--SGIVRAVAQYYGVS------PESILGRSQSREYVLPRQVAMYL 391 (455)
T ss_pred HHHHHC-CCCCCCHHHHHHHHHHHHCCCCCCCCCH--HHHHHHHHHHCCCC------HHHHCCCCCCCCCCHHHHHHHHH
T ss_conf 998715-6883649999999998742245765899--99999999872976------99960788884555799999999
Q ss_pred HHHH
Q ss_conf 9834
Q gi|254780552|r 305 IQQG 308 (334)
Q Consensus 305 ~r~g 308 (334)
+|..
T Consensus 392 ~R~l 395 (455)
T PRK12422 392 CRQK 395 (455)
T ss_pred HHHH
T ss_conf 9988
No 150
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=7.6e-15 Score=110.29 Aligned_cols=196 Identities=28% Similarity=0.415 Sum_probs=127.0
Q ss_pred CHHHH-CCHHHHHHHHHHHHHHHHHCC--------C-CCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCH--
Q ss_conf 87782-397999999999999866146--------7-76707997378855778999999861898531257644334--
Q gi|254780552|r 26 TLEEF-TGQVEACSNLKVFIEAAKARA--------E-ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA-- 93 (334)
Q Consensus 26 ~l~dv-iGQ~~~~~~l~~~i~a~~~~~--------~-~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~~~~~~~-- 93 (334)
.||.+ |||+++|+...+++.....|. + .+.++|+.||.|+|||-+||-+|+-.+.+|+.+-|.-++.+
T Consensus 12 eLd~yIIGQ~~AKkaVAIALRNR~RR~qL~~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKVEATKfTEVGY 91 (444)
T COG1220 12 ELDRYIIGQDEAKKAVAIALRNRWRRMQLEEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAGAPFIKVEATKFTEVGY 91 (444)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEEEEEEEECCC
T ss_conf 98767407177788999999989999754787762257553588888887688999999998489837887642134032
Q ss_pred ---------HHH--------------------------------------------------------------------
Q ss_conf ---------676--------------------------------------------------------------------
Q gi|254780552|r 94 ---------GDL-------------------------------------------------------------------- 96 (334)
Q Consensus 94 ---------~dl-------------------------------------------------------------------- 96 (334)
.|+
T Consensus 92 VGrDVesivRDLve~av~lvke~~~~~vk~~ae~~aeeRild~Lvp~~~~~~g~~~~~~~~~~~r~~~rkkLr~GeLdd~ 171 (444)
T COG1220 92 VGRDVESIIRDLVEIAVKLVREEKIEKVKDKAEELAEERILDALVPPAKNFWGQSENKQESSATREKFRKKLREGELDDK 171 (444)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCC
T ss_conf 56458999999999999999999999999999999999999986698755466673000026799999999975887761
Q ss_pred -----------------------------HHHH-----------------------------------------HHHHCC
Q ss_conf -----------------------------6666-----------------------------------------641016
Q gi|254780552|r 97 -----------------------------AALL-----------------------------------------TNLEDR 106 (334)
Q Consensus 97 -----------------------------~~~~-----------------------------------------~~~~~~ 106 (334)
..++ ..+...
T Consensus 172 eIeiev~~~~~~~~~i~~~pgme~~~~~l~~m~~~~~~~kkkkrk~~Vk~A~~~L~~eea~KLid~e~i~~eAi~~aE~~ 251 (444)
T COG1220 172 EIEIEVADKGPPGFEIMGPPGMEEMTNNLQDMFGNLGGKKKKKRKLKVKEAKKLLIEEEADKLIDQEEIKQEAIDAAEQN 251 (444)
T ss_pred EEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC
T ss_conf 79999722678753468998578999999999986468873036656999999877778876269999999999998856
Q ss_pred CHHHHHHHHHCCHH------------HHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECC----CCCCCCCHHH
Q ss_conf 37888757616989------------9999999863475100256787652000466740055204----5543355454
Q gi|254780552|r 107 DVLFIDEIHRLSII------------VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAAT----TRVGLLTNPL 170 (334)
Q Consensus 107 ~vlfiDEihrl~~~------------~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~AT----t~~~~l~~~l 170 (334)
.|+|||||+...+. .|--|||.+|.-.+. |.-|+ ++-.+..||+|. ..|..|.|.|
T Consensus 252 GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~--TKyG~------VkTdHILFIasGAFh~sKPSDLiPEL 323 (444)
T COG1220 252 GIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVS--TKYGP------VKTDHILFIASGAFHVAKPSDLIPEL 323 (444)
T ss_pred CEEEEEHHHHHHHCCCCCCCCCCHHHHCCCCCCCCCCCEEE--CCCCC------CCCCEEEEEECCCEECCCHHHCCHHH
T ss_conf 90897346678743788998866432010210310575443--15444------01443788714820037813217666
Q ss_pred HHCCCCEEECCCCCHHHHHHHHHH--------HH---HHC--CCHHHHHHHHHHHCCC--------CCCHHHHHHHHHHH
Q ss_conf 420120673264547999998777--------65---412--1011111112332022--------10156788777543
Q gi|254780552|r 171 QDRFGIPIRLNFYEIEDLKTIVQR--------GA---KLT--GLAVTDEAACEIAMRS--------RGTPRIAGRLLRRV 229 (334)
Q Consensus 171 ~sR~~~~~~~~~~~~~el~~il~~--------~~---~~~--~i~~~~~al~~ia~~s--------~Gd~R~AlnlLe~v 229 (334)
+-||.+...++.++.+++..|+.. .. +-+ .+.++++|++.||..+ +=.+|..-..+|++
T Consensus 324 QGRfPIRVEL~~Lt~~Df~rILtep~~sLikQY~aLlkTE~v~l~FtddaI~~iAeiA~~vN~~~ENIGARRLhTvlErl 403 (444)
T COG1220 324 QGRFPIRVELDALTKEDFERILTEPKASLIKQYKALLKTEGVELEFTDDAIKRIAEIAYQVNEKTENIGARRLHTVLERL 403 (444)
T ss_pred CCCCCEEEECCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCEEEEECHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf 27773488704489989999963760789999999973158348853799999999999855430001178899999999
No 151
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=99.58 E-value=3.2e-14 Score=106.47 Aligned_cols=161 Identities=18% Similarity=0.278 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCE-EEECCCCCCHHHHHHHHHHHCCCCCCC-------------C-CC--CCC-----
Q ss_conf 7999999999999866146776707-997378855778999999861898531-------------2-57--644-----
Q gi|254780552|r 33 QVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVNFRS-------------T-SG--PVI----- 90 (334)
Q Consensus 33 Q~~~~~~l~~~i~a~~~~~~~~~h~-Lf~GPpG~GKTtlA~iiA~~l~~~~~~-------------~-s~--~~~----- 90 (334)
|..+++.++.+++.. .++|. ||+| |+||+++|+.+|+.+.|.-.. + ++ |.+
T Consensus 7 Qp~i~~~l~~~i~~~-----rl~HAyLf~G--~~Gk~~~A~~~A~~l~C~~~~~~~pCg~C~~C~~i~~~~hpDv~~i~~ 79 (290)
T PRK07276 7 QPKLFQRFQTILEQD-----RLNHAYLFSG--DFASFEMALFLAQSLFCEQKEDVLPCGHCRSCRLIEQGDFSDVTVIEP 79 (290)
T ss_pred HHHHHHHHHHHHHCC-----CCCEEEECCC--CCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCEEECC
T ss_conf 899999999999849-----9650542169--868799999999998189999989898899999987699987137716
Q ss_pred ----CCHHHHHHHHHHH------HCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECC
Q ss_conf ----3346766666641------016378887576169899999999863475100256787652000466740055204
Q gi|254780552|r 91 ----AKAGDLAALLTNL------EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAAT 160 (334)
Q Consensus 91 ----~~~~dl~~~~~~~------~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~AT 160 (334)
-++.+++.+...+ +.+.|++||++|+++..++++||..+|+ |. +..++|..|
T Consensus 80 ~~~~I~vd~IR~l~~~~~~~~~~g~~KV~II~~Ad~mt~~AaNaLLK~LEE----------Pp--------~~t~~iLlt 141 (290)
T PRK07276 80 QGQVIKTDTIRELTANFSQSGYEGKRQVFIIKDADKMHVNAANSLLKVIEE----------PQ--------SEIYIFLLT 141 (290)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCHHHCCHHHHHHHHHHHCC----------CC--------CCCEEEEEE
T ss_conf 777576889999999984456137827999776565299999999997038----------98--------883799887
Q ss_pred CCCCCCCHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 5543355454420120673264547999998777654121011111112332022101567887775
Q gi|254780552|r 161 TRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227 (334)
Q Consensus 161 t~~~~l~~~l~sR~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~Gd~R~AlnlLe 227 (334)
+.+..+.++++|||. +++| +...+.+...+. ..| +.+.-...+|..++ ++-.|+.+.+
T Consensus 142 ~~~~~lLpTI~SRCQ-~i~f-p~~~~~l~~~l~----~~g--i~~~~a~~la~~~~-~~~~a~~l~~ 199 (290)
T PRK07276 142 NDENKVLPTIKSRTQ-IFHF-PKNEAYLYQLLE----EKG--LLKTQAKLLAKLAQ-STSEAEKLAQ 199 (290)
T ss_pred CCHHHCCHHHHHCCC-CCCC-CCCHHHHHHHHH----HCC--CCHHHHHHHHHHHC-CHHHHHHHHH
T ss_conf 992549378873660-1028-996799999999----869--98679999999965-9999999872
No 152
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=99.57 E-value=2e-14 Score=107.79 Aligned_cols=123 Identities=19% Similarity=0.292 Sum_probs=88.8
Q ss_pred CCCCE-EEECCCCCCHHHHHHHHHHHCCCCC--------C------CC---CCCCC------------------CCHHHH
Q ss_conf 76707-9973788557789999998618985--------3------12---57644------------------334676
Q gi|254780552|r 53 ALDHV-LFVGPPGLGKTTLAQVVARELGVNF--------R------ST---SGPVI------------------AKAGDL 96 (334)
Q Consensus 53 ~~~h~-Lf~GPpG~GKTtlA~iiA~~l~~~~--------~------~~---s~~~~------------------~~~~dl 96 (334)
.++|. ||+||.|+||+++|+.+|+.+-|.- . .+ +-|.+ -++.++
T Consensus 19 rl~HA~L~~Gp~G~Gk~~~A~~~A~~llC~~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~~g~~~~~I~idqi 98 (325)
T PRK08699 19 RRPNAWLFVGKKGTGKTAFARFAAKALLCETPAPGCKPCGECMSCHLFGQGSHPDFYEITPLADEPENGRKLLQIKIDAV 98 (325)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHH
T ss_conf 50117975799997899999999999828999888998988888999865999996885134453001665566769999
Q ss_pred HHHHHHH------HCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCCCCCCHHH
Q ss_conf 6666641------0163788875761698999999998634751002567876520004667400552045543355454
Q gi|254780552|r 97 AALLTNL------EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPL 170 (334)
Q Consensus 97 ~~~~~~~------~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~~~l~~~l 170 (334)
+.+...+ +.+.|++||++|++|...+++||..+|+ |. +...||..|+++..|.+++
T Consensus 99 R~l~~~~~~~~~~~~~kV~ii~~ae~mn~~aaNaLLK~LEE----------Pp--------~~~~fiL~t~~~~~llpTI 160 (325)
T PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESMNVQAANSLLKVLEE----------PP--------PQVVFLLVSHAADKVLPTI 160 (325)
T ss_pred HHHHHHHCCCCCCCCCEEEEECCHHHHCHHHHHHHHHHHCC----------CC--------CCEEEEEEECCHHHCCCHH
T ss_conf 99999971086568946999857777589999999998417----------88--------8848999879846462339
Q ss_pred HHCCCCEEECCCCCHHHHHHHHHH
Q ss_conf 420120673264547999998777
Q gi|254780552|r 171 QDRFGIPIRLNFYEIEDLKTIVQR 194 (334)
Q Consensus 171 ~sR~~~~~~~~~~~~~el~~il~~ 194 (334)
+|||. ++.|.+++.++...-+..
T Consensus 161 ~SRc~-~~~~~~p~~~~~~~~L~~ 183 (325)
T PRK08699 161 KSRCR-KMVLPAPSHEEALAYLRE 183 (325)
T ss_pred HHCCC-CCCCCCCCHHHHHHHHHH
T ss_conf 86454-210899599999999997
No 153
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.57 E-value=1.2e-13 Score=102.91 Aligned_cols=206 Identities=17% Similarity=0.195 Sum_probs=127.2
Q ss_pred CHHHHCCHHHHHHHHHHHH-HHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHC---CCCCCCCCCCCCCCH---HHH--
Q ss_conf 8778239799999999999-9866146776707997378855778999999861---898531257644334---676--
Q gi|254780552|r 26 TLEEFTGQVEACSNLKVFI-EAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL---GVNFRSTSGPVIAKA---GDL-- 96 (334)
Q Consensus 26 ~l~dviGQ~~~~~~l~~~i-~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l---~~~~~~~s~~~~~~~---~dl-- 96 (334)
+|+++||+....+.+.... ..+. .-.++|++|.+||||..+|+.|-+.. +.+|+.+|...+... +++
T Consensus 202 ~F~~iig~S~~m~~v~~~a~r~A~----~d~pVLI~GEsGTGKellAraIH~~S~R~~~pFv~vnC~alp~~l~eseLFG 277 (513)
T PRK10820 202 AFSQIVAVSPKMKHVVEQARKLAM----LSAPLLITGDTGTGKDLFAYACHLASPRAKKPYLALNCASIPEDAVESELFG 277 (513)
T ss_pred CHHHHEECCHHHHHHHHHHHHHHC----CCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHCC
T ss_conf 877751089999999999999859----8998899898982499999999966887899826888998996789998638
Q ss_pred ------HHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCCC------
Q ss_conf ------66666410163788875761698999999998634751002567876520004667400552045543------
Q gi|254780552|r 97 ------AALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVG------ 164 (334)
Q Consensus 97 ------~~~~~~~~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~~------ 164 (334)
.+.+..++ +..||+|||+.++...|..||.+++++.+.- ++.. +.++. ++-+|+||+.+-
T Consensus 278 ~a~~~~~G~fe~A~-gGTLfLdEI~~l~~~~Q~kLLr~Lq~~~~~r-vG~~---~~~~~---dvRiIaaT~~dL~~lv~~ 349 (513)
T PRK10820 278 HAPEGKKGFFEQAN-GGSVLLDEIGEMSPRMQAKLLRFLNDGTFRR-VGED---HEVHV---DVRVICATQKNLVELVQK 349 (513)
T ss_pred CCCCCCCCCEEECC-CCEEEEECHHHCCHHHHHHHHHHHHCCEEEE-CCCC---CEEEE---EEEEEECCCHHHHHHHHC
T ss_conf 76668897557858-9889997836599999999999986897996-5998---53567---789996265309999872
Q ss_pred -CCCHHHHHCCC-CEEECCCCC--HHHHHHH----HHHHHHHCC---CHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHH
Q ss_conf -35545442012-067326454--7999998----777654121---011111112332022-10156788777543334
Q gi|254780552|r 165 -LLTNPLQDRFG-IPIRLNFYE--IEDLKTI----VQRGAKLTG---LAVTDEAACEIAMRS-RGTPRIAGRLLRRVRDF 232 (334)
Q Consensus 165 -~l~~~l~sR~~-~~~~~~~~~--~~el~~i----l~~~~~~~~---i~~~~~al~~ia~~s-~Gd~R~AlnlLe~v~d~ 232 (334)
....-|.-|.. +.+++.|+. .+|+..+ +.+.+...+ ..++++|+..+..+. -|+.|-.-|.++++...
T Consensus 350 g~FReDLyyRL~v~~I~lPpLReR~eDI~~L~~~fl~~~~~~~g~~~~~ls~~a~~~L~~y~WPGNVREL~n~iera~~~ 429 (513)
T PRK10820 350 GLFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLSADLSTVLTRYGWPGNVRQLKNAIYRALTQ 429 (513)
T ss_pred CCCCHHHHHHHHCCCCCCCCHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 98508899986167255888344655699999999999999759998984799999997089997999999999999995
Q ss_pred HHHHCCCCCCHHHH
Q ss_conf 55415886427787
Q gi|254780552|r 233 AEVAHAKTITREIA 246 (334)
Q Consensus 233 a~~~~~~~i~~~~~ 246 (334)
+ ....|+.+++
T Consensus 430 ~---~g~~i~~~di 440 (513)
T PRK10820 430 L---EGYELRPQDI 440 (513)
T ss_pred C---CCCCCCHHHC
T ss_conf 7---9985349982
No 154
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.56 E-value=1e-12 Score=97.22 Aligned_cols=211 Identities=18% Similarity=0.236 Sum_probs=131.4
Q ss_pred CHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHC---CCCCCCCCCCCCCCH---HHH---
Q ss_conf 87782397999999999999866146776707997378855778999999861---898531257644334---676---
Q gi|254780552|r 26 TLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL---GVNFRSTSGPVIAKA---GDL--- 96 (334)
Q Consensus 26 ~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l---~~~~~~~s~~~~~~~---~dl--- 96 (334)
.+..+||+......+...++..-. .-.++|+.|++||||..+|+.|-..- +.+|+.+|+..+..- +++
T Consensus 141 ~~~~lig~S~~m~~v~~~i~~~A~---s~~~VLI~GEsGTGKe~~Ar~IH~~S~r~~~pFv~vnc~ai~~~l~eseLFG~ 217 (457)
T PRK11361 141 QWGHILTNSPAMMDICKDTAKIAL---SQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGH 217 (457)
T ss_pred CCCCCEECCHHHHHHHHHHHHHHC---CCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCC
T ss_conf 567745469999999999999848---89958998899857899999999837988998387647879857789997187
Q ss_pred ------------HHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCCC
Q ss_conf ------------66666410163788875761698999999998634751002567876520004667400552045543
Q gi|254780552|r 97 ------------AALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVG 164 (334)
Q Consensus 97 ------------~~~~~~~~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~~ 164 (334)
.+.+..+ .+.-||+|||+.++...|..||.++|++.+.-+-+ .+..+. ++-+|+||+++-
T Consensus 218 ~kgaftga~~~~~G~~e~A-~gGTLfLdeI~~l~~~~Q~kLLr~L~~~~~~~~g~----~~~~~~---dvRiIaaT~~~L 289 (457)
T PRK11361 218 EKGAFTGAQTLRQGLFERA-NEGTLLLDEIGEMPLVLQAKLLRILQEREFERIGG----HQTIKV---DIRIIAATNRDL 289 (457)
T ss_pred CCCCCCCCCCCCCCCHHHC-CCCCEECCCHHHHHHHHHHHHHHHHHCCCEEECCC----CCEEEE---CCEEEECCCCCH
T ss_conf 6678788531469861335-99826314664523999999999986492785699----713665---348996578785
Q ss_pred -------CCCHHHHHCCC-CEEECCCCC--HHHHHHHH----HHHHHHCC---CHHHHHHHHHHHCCC-CCCHHHHHHHH
Q ss_conf -------35545442012-067326454--79999987----77654121---011111112332022-10156788777
Q gi|254780552|r 165 -------LLTNPLQDRFG-IPIRLNFYE--IEDLKTIV----QRGAKLTG---LAVTDEAACEIAMRS-RGTPRIAGRLL 226 (334)
Q Consensus 165 -------~l~~~l~sR~~-~~~~~~~~~--~~el~~il----~~~~~~~~---i~~~~~al~~ia~~s-~Gd~R~AlnlL 226 (334)
....-|..|+. +.+++.++. .+|+..++ .+.+...+ ..++++|+..+..+. -|+.|-.-|.+
T Consensus 290 ~~~v~~g~Fr~DLyyrL~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvREL~n~i 369 (457)
T PRK11361 290 QAMVKEGTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRELSNVI 369 (457)
T ss_pred HHHHHCCCCHHHHHHHHCEEEEECCCHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf 99987583238899530221251738545875499999999999999749998988999999995699997999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 543334554158864277878765
Q gi|254780552|r 227 RRVRDFAEVAHAKTITREIADAAL 250 (334)
Q Consensus 227 e~v~d~a~~~~~~~i~~~~~~~~l 250 (334)
+++.- ......|+.++....+
T Consensus 370 erav~---~~~~~~i~~~~l~~~~ 390 (457)
T PRK11361 370 ERAVV---MNSGPIIFSEDLPPQI 390 (457)
T ss_pred HHHHH---HCCCCCCCHHHCCHHH
T ss_conf 99998---2899815667684866
No 155
>KOG0743 consensus
Probab=99.55 E-value=3.6e-14 Score=106.14 Aligned_cols=174 Identities=19% Similarity=0.239 Sum_probs=114.1
Q ss_pred CCCCHHHHCCHHHHHHHHHHHHHHH-------HHCCCCC-CCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHH
Q ss_conf 7898778239799999999999986-------6146776-7079973788557789999998618985312576443346
Q gi|254780552|r 23 RPRTLEEFTGQVEACSNLKVFIEAA-------KARAEAL-DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG 94 (334)
Q Consensus 23 RP~~l~dviGQ~~~~~~l~~~i~a~-------~~~~~~~-~h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~~~~~~~~ 94 (334)
+|.+|+-++=...+|+.+..-+... +.+|++- ...||||||||||||+.-++|+.|+..+.-++=.....-.
T Consensus 196 HpstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n~ 275 (457)
T KOG0743 196 HPSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKLDS 275 (457)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCEEECCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCH
T ss_conf 99874420148667899999999997223578864845000412047999988899999972058736774400236838
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHC----CHHH--------------HHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEE
Q ss_conf 76666664101637888757616----9899--------------99999986347510025678765200046674005
Q gi|254780552|r 95 DLAALLTNLEDRDVLFIDEIHRL----SIIV--------------EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTL 156 (334)
Q Consensus 95 dl~~~~~~~~~~~vlfiDEihrl----~~~~--------------q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~l 156 (334)
|++.++.....++||.|..|+.- .+.+ ..-||.++.. +.......+ .+
T Consensus 276 dLr~LL~~t~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDG-----lwSscg~ER---------Ii 341 (457)
T KOG0743 276 DLRHLLLATPNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDG-----LWSSCGDER---------II 341 (457)
T ss_pred HHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHCC-----CCCCCCCCE---------EE
T ss_conf 9999997289971899961243230443455566454677660664775664134-----300488734---------99
Q ss_pred EECCCCCCCCCHHHHH--CCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHC
Q ss_conf 5204554335545442--01206732645479999987776541210111111123320
Q gi|254780552|r 157 IAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAM 213 (334)
Q Consensus 157 I~ATt~~~~l~~~l~s--R~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~ 213 (334)
|..||-..+|.|||.- |+.+.+.+.+.+.+.++..+.+... ++-+..-..+|.+
T Consensus 342 vFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~---~~~~h~L~~eie~ 397 (457)
T KOG0743 342 VFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLG---IEEDHRLFDEIER 397 (457)
T ss_pred EEECCCHHHCCHHHCCCCCCEEEEECCCCCHHHHHHHHHHHCC---CCCCCHHHHHHHH
T ss_conf 9946871006886628875225667266987999999998338---9887306799998
No 156
>KOG0728 consensus
Probab=99.55 E-value=7.6e-14 Score=104.18 Aligned_cols=190 Identities=26% Similarity=0.347 Sum_probs=118.0
Q ss_pred CCCHHHHHC----CCCCHHHHC-CHHHHHHHHHHHHHHHHHCCC--------CCCCEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 120578750----789877823-979999999999998661467--------7670799737885577899999986189
Q gi|254780552|r 14 QEDADISLL----RPRTLEEFT-GQVEACSNLKVFIEAAKARAE--------ALDHVLFVGPPGLGKTTLAQVVARELGV 80 (334)
Q Consensus 14 ~~~~~~~~l----RP~~l~dvi-GQ~~~~~~l~~~i~a~~~~~~--------~~~h~Lf~GPpG~GKTtlA~iiA~~l~~ 80 (334)
+-|+.++.| -|.+--|+| |.+..++.++..|+-.-++.+ .+..+|+|||||||||.+|+.+|+...|
T Consensus 128 KvDpLVsLMmVeKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c 207 (404)
T KOG0728 128 KVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDC 207 (404)
T ss_pred CCCHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCE
T ss_conf 53346677745307830888750388899999999826566878998518788760488469997562999998754140
Q ss_pred CCCCCCCCCCC------CHHHHHHHHHHHH--CCCHHHHHHHHHCCH-----------HHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 85312576443------3467666666410--163788875761698-----------9999999986347510025678
Q gi|254780552|r 81 NFRSTSGPVIA------KAGDLAALLTNLE--DRDVLFIDEIHRLSI-----------IVEEILYPAMEDFQLDLMVGEG 141 (334)
Q Consensus 81 ~~~~~s~~~~~------~~~dl~~~~~~~~--~~~vlfiDEihrl~~-----------~~q~~Ll~~mE~~~i~i~~~~~ 141 (334)
.|+.+||+.+- +..-++.+|..+. ..+|+|.|||+.+.. ..|-..|..+.. ++ |
T Consensus 208 ~firvsgselvqk~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnq--ld-----g 280 (404)
T KOG0728 208 TFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQ--LD-----G 280 (404)
T ss_pred EEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHH--CC-----C
T ss_conf 7999644999999850138999999999875088267500001212343457898638999999999974--02-----4
Q ss_pred CCCCEEECCCCCCEEEECCCCCCCCCHHHHH--CCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCC
Q ss_conf 7652000466740055204554335545442--012067326454799999877765412101111111233202210
Q gi|254780552|r 142 PSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRG 217 (334)
Q Consensus 142 ~~a~~~~~~~~~f~lI~ATt~~~~l~~~l~s--R~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~G 217 (334)
+.+. ....+|.||++...+.++|+. |....+.|.+++.+.-.+|++-...+.++.-.- -+..||..-.|
T Consensus 281 feat------knikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi-~l~kiaekm~g 351 (404)
T KOG0728 281 FEAT------KNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGI-NLRKIAEKMPG 351 (404)
T ss_pred CCCC------CCEEEEEECCCCCCCCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHCCC
T ss_conf 0003------66269984164222468663877545556489987788878998855530133066-78999986789
No 157
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=8.4e-14 Score=103.92 Aligned_cols=188 Identities=25% Similarity=0.310 Sum_probs=120.7
Q ss_pred HCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHC----------CCCCCCCC----
Q ss_conf 5078987782397999999999999866146776707997378855778999999861----------89853125----
Q gi|254780552|r 21 LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL----------GVNFRSTS---- 86 (334)
Q Consensus 21 ~lRP~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l----------~~~~~~~s---- 86 (334)
.-|-..+|-|||-++-+.++-..+. .+..+ +-+|.|+||||||.++.-+|... +.....+.
T Consensus 163 ~Ar~gklDPvIGRd~EI~r~iqIL~-RR~KN----NPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~L 237 (786)
T COG0542 163 LAREGKLDPVIGRDEEIRRTIQILS-RRTKN----NPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSL 237 (786)
T ss_pred HHHCCCCCCCCCHHHHHHHHHHHHH-CCCCC----CCEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEECHHHH
T ss_conf 9865898877374799999999983-56889----984766898889999989999974699997875887997148767
Q ss_pred --CCCCC-----CHHHHHHHHHHHHCCCHHHHHHHHHCC---------HHHHHHHHHHHHCCCCCCCCCCCCCCCEEECC
Q ss_conf --76443-----346766666641016378887576169---------89999999986347510025678765200046
Q gi|254780552|r 87 --GPVIA-----KAGDLAALLTNLEDRDVLFIDEIHRLS---------IIVEEILYPAMEDFQLDLMVGEGPSARSVKIN 150 (334)
Q Consensus 87 --~~~~~-----~~~dl~~~~~~~~~~~vlfiDEihrl~---------~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~ 150 (334)
|..+. +.+.+..-+...+ +.||||||||.+- -.+-+.|-|++..|.+
T Consensus 238 vAGakyRGeFEeRlk~vl~ev~~~~-~vILFIDEiHtiVGAG~~~g~a~DAaNiLKPaLARGeL---------------- 300 (786)
T COG0542 238 VAGAKYRGEFEERLKAVLKEVEKSK-NVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGEL---------------- 300 (786)
T ss_pred HCCCCCCCCHHHHHHHHHHHHHCCC-CEEEEEECHHHHCCCCCCCCCCCCHHHHHHHHHHCCCE----------------
T ss_conf 4646535738999999999985179-84999823554057776666651256646778745873----------------
Q ss_pred CCCCEEEECCCCCC--C---CCHHHHHCCCCEEECCCCCHHHHHHHHHHHH----HHCCCHHHHHHHHHHHCCC------
Q ss_conf 67400552045543--3---5545442012067326454799999877765----4121011111112332022------
Q gi|254780552|r 151 LSRFTLIAATTRVG--L---LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGA----KLTGLAVTDEAACEIAMRS------ 215 (334)
Q Consensus 151 ~~~f~lI~ATt~~~--~---l~~~l~sR~~~~~~~~~~~~~el~~il~~~~----~~~~i~~~~~al~~ia~~s------ 215 (334)
.+|||||-.. + -.+||--||.-+ ..+.++.++-..|++... ...+|.++++|+..-+..|
T Consensus 301 ----~~IGATT~~EYRk~iEKD~AL~RRFQ~V-~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RYI~d 375 (786)
T COG0542 301 ----RCIGATTLDEYRKYIEKDAALERRFQKV-LVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRYIPD 375 (786)
T ss_pred ----EEEEECCHHHHHHHHHHCHHHHHCCCEE-ECCCCCHHHHHHHHHHHHHHHHHCCCCEECHHHHHHHHHHHHHHCCC
T ss_conf ----7997355899988733066778467510-27998989999999877888877069643379999999999864556
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q ss_conf 10156788777543334554
Q gi|254780552|r 216 RGTPRIAGRLLRRVRDFAEV 235 (334)
Q Consensus 216 ~Gd~R~AlnlLe~v~d~a~~ 235 (334)
+-=|..|+.++..+.....+
T Consensus 376 R~LPDKAIDLiDeA~A~~~l 395 (786)
T COG0542 376 RFLPDKAIDLLDEAGARVRL 395 (786)
T ss_pred CCCCCHHHHHHHHHHHHHHH
T ss_conf 78994677788999999972
No 158
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.53 E-value=1.7e-13 Score=101.98 Aligned_cols=202 Identities=24% Similarity=0.274 Sum_probs=127.1
Q ss_pred CCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHH----CCCCCCCCCCCCCCC-HHH-
Q ss_conf 07898778239799999999999986614677670799737885577899999986----189853125764433-467-
Q gi|254780552|r 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE----LGVNFRSTSGPVIAK-AGD- 95 (334)
Q Consensus 22 lRP~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~----l~~~~~~~s~~~~~~-~~d- 95 (334)
+....++++||...-...+.--+.+.-.. =-|+|+.|++||||+.+|+.|... -+.+|+.+|...+.. .-+
T Consensus 72 ~~~~~~~~LIG~~~~~~~~~eqik~~ap~---~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~~~~ 148 (403)
T COG1221 72 LKSEALDDLIGESPSLQELREQIKAYAPS---GLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENLQEA 148 (403)
T ss_pred CCCHHHHHHHCCCHHHHHHHHHHHHHCCC---CCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEEEHHHHCCCHHHH
T ss_conf 02215666635688899999999861899---984798668875388999999986121358987997777737677777
Q ss_pred ----------------HHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEEC
Q ss_conf ----------------6666664101637888757616989999999986347510025678765200046674005520
Q gi|254780552|r 96 ----------------LAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAA 159 (334)
Q Consensus 96 ----------------l~~~~~~~~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~A 159 (334)
-.+++..+ .+..||+||||+|+...|+.|+.++|++.+.=+-+..+ .. ..|-+|+|
T Consensus 149 eLFG~~kGaftGa~~~k~Glfe~A-~GGtLfLDEI~~LP~~~Q~kLl~~le~g~~~rvG~~~~----~~---~dVRli~A 220 (403)
T COG1221 149 ELFGHEKGAFTGAQGGKAGLFEQA-NGGTLFLDEIHRLPPEGQEKLLRVLEEGEYRRVGGSQP----RP---VDVRLICA 220 (403)
T ss_pred HHHCCCCCEEECCCCCCCCHHEEC-CCCEEEHHHHHHCCHHHHHHHHHHHHCCCEEECCCCCC----CC---CCCEEEEC
T ss_conf 773200000025667867642052-79777656365379858999999987186576688888----67---77404513
Q ss_pred CCCCC--CCCH--HHHH-CCCCEEECCCCCH--HHHHH----HHHHHHHHCCCHH---HHHHHHHHHC-CCCCCHHHHHH
Q ss_conf 45543--3554--5442-0120673264547--99999----8777654121011---1111123320-22101567887
Q gi|254780552|r 160 TTRVG--LLTN--PLQD-RFGIPIRLNFYEI--EDLKT----IVQRGAKLTGLAV---TDEAACEIAM-RSRGTPRIAGR 224 (334)
Q Consensus 160 Tt~~~--~l~~--~l~s-R~~~~~~~~~~~~--~el~~----il~~~~~~~~i~~---~~~al~~ia~-~s~Gd~R~Aln 224 (334)
||+.. ++.. .+.. |+.+++.+.++.. +|+.. .++..|+..+..+ .++++..+-. .--|+.|-.-|
T Consensus 221 T~~~l~~~~~~g~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L~~y~~pGNirELkN 300 (403)
T COG1221 221 TTEDLEEAVLAGADLTRRLNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRALLAYDWPGNIRELKN 300 (403)
T ss_pred CCCCHHHHHHHHCCHHHHHCCCEECCCCHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCHHHHHH
T ss_conf 56687999874052556416754318972435555999999999999997399988888999999984889983999999
Q ss_pred HHHHHHHHHH
Q ss_conf 7754333455
Q gi|254780552|r 225 LLRRVRDFAE 234 (334)
Q Consensus 225 lLe~v~d~a~ 234 (334)
+.+++.-.+.
T Consensus 301 ~Ve~~~~~~~ 310 (403)
T COG1221 301 LVERAVAQAS 310 (403)
T ss_pred HHHHHHHHHC
T ss_conf 9999999735
No 159
>KOG0651 consensus
Probab=99.51 E-value=4.4e-14 Score=105.63 Aligned_cols=136 Identities=27% Similarity=0.411 Sum_probs=87.8
Q ss_pred CCCCHHHHCCHHHHHHHHHHHHHHHHHC-------C-CCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC--
Q ss_conf 7898778239799999999999986614-------6-77670799737885577899999986189853125764433--
Q gi|254780552|r 23 RPRTLEEFTGQVEACSNLKVFIEAAKAR-------A-EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK-- 92 (334)
Q Consensus 23 RP~~l~dviGQ~~~~~~l~~~i~a~~~~-------~-~~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~~~~~~-- 92 (334)
|--+|+++-|.-.....++--++--..+ | +++.-+++|||||+|||-+|+++|..+|++|...+++.+..
T Consensus 127 ~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~ky 206 (388)
T KOG0651 127 RNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKY 206 (388)
T ss_pred CCCCHHHHCCHHHHHHHHHHHEEEECCCCHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEHHHHHHHH
T ss_conf 54678771783888899886557402481002345777882568767999864599999998659854774476663300
Q ss_pred HHH----HHHHHHHHH--CCCHHHHHHHHHC-----------CHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCE
Q ss_conf 467----666666410--1637888757616-----------98999999998634751002567876520004667400
Q gi|254780552|r 93 AGD----LAALLTNLE--DRDVLFIDEIHRL-----------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFT 155 (334)
Q Consensus 93 ~~d----l~~~~~~~~--~~~vlfiDEihrl-----------~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~ 155 (334)
+++ ++..+.-+. ..+|+|+||||.. ++..|-+|...+.. +- ++. .+.++-
T Consensus 207 iGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnq-----md----gfd----~l~rVk 273 (388)
T KOG0651 207 IGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQ-----MD----GFD----TLHRVK 273 (388)
T ss_pred CCCHHHHHHHHHHHHHHHCCEEEEEHHHHHHCCEEECCCCCHHHHHHHHHHHHHHH-----HC----CCH----HCCCCC
T ss_conf 26578899999977865275577510123114577335552059999999999874-----21----401----206631
Q ss_pred EEECCCCCCCCCHHHH
Q ss_conf 5520455433554544
Q gi|254780552|r 156 LIAATTRVGLLTNPLQ 171 (334)
Q Consensus 156 lI~ATt~~~~l~~~l~ 171 (334)
+|.|||+|.-|.+||+
T Consensus 274 ~ImatNrpdtLdpaLl 289 (388)
T KOG0651 274 TIMATNRPDTLDPALL 289 (388)
T ss_pred EEEECCCCCCCCHHHC
T ss_conf 7985388665665542
No 160
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.50 E-value=9.3e-13 Score=97.51 Aligned_cols=199 Identities=20% Similarity=0.314 Sum_probs=129.4
Q ss_pred CCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHC---CCCCCCCCCCCCCCH---HHH--
Q ss_conf 987782397999999999999866146776707997378855778999999861---898531257644334---676--
Q gi|254780552|r 25 RTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL---GVNFRSTSGPVIAKA---GDL-- 96 (334)
Q Consensus 25 ~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l---~~~~~~~s~~~~~~~---~dl-- 96 (334)
-+|+++||............ +.-...-.++|+.|-.||||-.+|+.|-+.. +-+|+.+|+.++... +++
T Consensus 242 y~f~~Iig~S~~m~~~~~~a---kr~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe~LlESELFG 318 (560)
T COG3829 242 YTFDDIIGESPAMLRVLELA---KRIAKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPETLLESELFG 318 (560)
T ss_pred CCHHHHCCCCHHHHHHHHHH---HHHCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHC
T ss_conf 66100205899999999999---863389982899537886689999998744843479807876433888888888727
Q ss_pred --HHHHHHHH-----------CCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCC
Q ss_conf --66666410-----------16378887576169899999999863475100256787652000466740055204554
Q gi|254780552|r 97 --AALLTNLE-----------DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163 (334)
Q Consensus 97 --~~~~~~~~-----------~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~ 163 (334)
.+.|+.+. ++.-||+|||..++..-|.-||.+++++.+.= +|.. +..+. ++-+|+|||++
T Consensus 319 ye~GAFTGA~~~GK~GlfE~A~gGTLFLDEIgempl~LQaKLLRVLQEkei~r-vG~t---~~~~v---DVRIIAATN~n 391 (560)
T COG3829 319 YEKGAFTGASKGGKPGLFELANGGTLFLDEIGEMPLPLQAKLLRVLQEKEIER-VGGT---KPIPV---DVRIIAATNRN 391 (560)
T ss_pred CCCCCCCCCCCCCCCCCEEECCCCEEEEHHHCCCCHHHHHHHHHHHHHCEEEE-CCCC---CCEEE---EEEEEECCCCC
T ss_conf 67764246445799760544169837712320399899999999875353785-3788---75356---78999425758
Q ss_pred CC---------------------CCHHHHHCCCCEEECCCCCHHHHHH----HHHHHHHHCC--CH-HHHHHHHHHHCCC
Q ss_conf 33---------------------5545442012067326454799999----8777654121--01-1111112332022
Q gi|254780552|r 164 GL---------------------LTNPLQDRFGIPIRLNFYEIEDLKT----IVQRGAKLTG--LA-VTDEAACEIAMRS 215 (334)
Q Consensus 164 ~~---------------------l~~~l~sR~~~~~~~~~~~~~el~~----il~~~~~~~~--i~-~~~~al~~ia~~s 215 (334)
.. -.||||.| ++|+.. .+++..+..+ +. ++++++..+.++.
T Consensus 392 L~~~i~~G~FReDLYYRLNV~~i~iPPLReR-----------~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~a~~~L~~y~ 460 (560)
T COG3829 392 LEKMIAEGTFREDLYYRLNVIPITIPPLRER-----------KEDIPLLAEYFLDKFSRRYGRNVKGLSPDALALLLRYD 460 (560)
T ss_pred HHHHHHCCCCHHHHEEEECEEEECCCCCCCC-----------CCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCC
T ss_conf 9999863961655300304011147772338-----------20189999999999998728876668999999998689
Q ss_pred -CCCHHHHHHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf -1015678877754333455415886427787
Q gi|254780552|r 216 -RGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246 (334)
Q Consensus 216 -~Gd~R~AlnlLe~v~d~a~~~~~~~i~~~~~ 246 (334)
-|+.|-.-|++|++.-+. .....|+..+.
T Consensus 461 WPGNVRELeNviER~v~~~--~~~~~I~~~~l 490 (560)
T COG3829 461 WPGNVRELENVIERAVNLV--ESDGLIDADDL 490 (560)
T ss_pred CCCHHHHHHHHHHHHHHCC--CCCCEEEHHHC
T ss_conf 9960999999999998106--88662225226
No 161
>TIGR01817 nifA Nif-specific regulatory protein; InterPro: IPR010113 This entry represents NifA, a DNA-binding regulatory protein for nitrogen fixation. Not included in this group are: the homologue in Aquifex aeolicus (which lacks nitrogenase), transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms. In diazotrophic proteobacteria, the sigma54-dependent activator NifA activates transcription of the nif (nitrogen fixation) genes by a conserved mechanism common to members of the enhancer binding protein family. Although NifA proteins have similar domain structures, both transcriptional regulation of nifA expression and posttranslational regulation of NifA activity by oxygen and fixed nitrogen vary significantly from one organism to another. In Klebsiella pneumoniae and Azotobacter vinelandii, nifA is co-ordinately transcribed with a second gene, nifL, whose product inhibits NifA activity in response to oxygen and fixed nitrogen .; GO: 0003677 DNA binding, 0016563 transcription activator activity, 0009399 nitrogen fixation.
Probab=99.50 E-value=1.2e-13 Score=103.02 Aligned_cols=205 Identities=22% Similarity=0.294 Sum_probs=143.2
Q ss_pred HHCCCCCHHHHCCHHHHHHHHHH-HHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHC---CCCCCCCCCCCCCCH--
Q ss_conf 75078987782397999999999-999866146776707997378855778999999861---898531257644334--
Q gi|254780552|r 20 SLLRPRTLEEFTGQVEACSNLKV-FIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL---GVNFRSTSGPVIAKA-- 93 (334)
Q Consensus 20 ~~lRP~~l~dviGQ~~~~~~l~~-~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l---~~~~~~~s~~~~~~~-- 93 (334)
..=|+-..+-|||.-...+.+-. ....++- =+.+|+=|-.||||=.+|++|=... +.+|+.+|..++..-
T Consensus 204 ~~~~~~~~~~i~G~Spam~~v~~~~~~vA~~----nSTVLlRGESGTGKEl~A~AIH~~SpR~~~PFVK~NCAALse~lL 279 (574)
T TIGR01817 204 ARRRSGKEDGIVGKSPAMRQVVDQIKVVARS----NSTVLLRGESGTGKELIAKAIHELSPRAKRPFVKLNCAALSETLL 279 (574)
T ss_pred HHHHCCCCCCCCCCCHHHHHHHHHHHHHCCC----CCEEEEECCCCCCHHHHHHHHCCCCCCCCCCCEEEECCCCCCCHH
T ss_conf 2331234474012478999999886520131----766785056574433444234046645578854500644776112
Q ss_pred -HHH----HHHHHHH----------HCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEE
Q ss_conf -676----6666641----------0163788875761698999999998634751002567876520004667400552
Q gi|254780552|r 94 -GDL----AALLTNL----------EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIA 158 (334)
Q Consensus 94 -~dl----~~~~~~~----------~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ 158 (334)
++| .+.||.+ .+|.-||+|||-+.++.=|--||.++-+|..-=+ -.++|+++| +-+|+
T Consensus 280 ESELFGHEKGAFTGA~~~RkGRFElAdGGTLFLDEIGEISPaFQAKLLRVLQEGEFERV----GG~~TlKVd---VRlva 352 (574)
T TIGR01817 280 ESELFGHEKGAFTGAVAQRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERV----GGNRTLKVD---VRLVA 352 (574)
T ss_pred HHHHHCCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEE----CCCEEEEEE---EEEEE
T ss_conf 45451343014688875177753302788320000146785688899887521002532----787248873---67886
Q ss_pred CCCCC---------------------CCCCHHHHHCCCCEEECCCCCHHHHH-HHHHHHHHH--CC-CHHHHHHHHHHHC
Q ss_conf 04554---------------------33554544201206732645479999-987776541--21-0111111123320
Q gi|254780552|r 159 ATTRV---------------------GLLTNPLQDRFGIPIRLNFYEIEDLK-TIVQRGAKL--TG-LAVTDEAACEIAM 213 (334)
Q Consensus 159 ATt~~---------------------~~l~~~l~sR~~~~~~~~~~~~~el~-~il~~~~~~--~~-i~~~~~al~~ia~ 213 (334)
|||+. +.+.||||.|-. +...|. ..|+|+... .. +.++++|++.|-+
T Consensus 353 ATNrdLE~aV~~GeFRaDLYYRinVvPl~lPPLRER~~--------DIP~LA~~fL~kf~~en~R~mL~~~~~Ai~~Lm~ 424 (574)
T TIGR01817 353 ATNRDLEEAVAKGEFRADLYYRINVVPLILPPLRERRE--------DIPLLAEAFLEKFNRENGRPMLTLSPSAIRVLMS 424 (574)
T ss_pred CCCCCHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCC--------HHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHC
T ss_conf 13735588972789730235544222340787778731--------1689999999987665187203226789989751
Q ss_pred CC-CCCHHHHHHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 22-1015678877754333455415886427787
Q gi|254780552|r 214 RS-RGTPRIAGRLLRRVRDFAEVAHAKTITREIA 246 (334)
Q Consensus 214 ~s-~Gd~R~AlnlLe~v~d~a~~~~~~~i~~~~~ 246 (334)
+. =|+.|-.=|.+||. |.+..++.||..++
T Consensus 425 c~wPGNVRELENC~eRt---AtLs~~~~It~~df 455 (574)
T TIGR01817 425 CKWPGNVRELENCVERT---ATLSRSGTITRSDF 455 (574)
T ss_pred CCCCCCCEEHHHHHHHH---HHHCCCCCCCCCEE
T ss_conf 78999740044378778---75416885164236
No 162
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.49 E-value=3.2e-13 Score=100.32 Aligned_cols=198 Identities=23% Similarity=0.309 Sum_probs=123.7
Q ss_pred HHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHC---CCCCCCCCCCCCCCH---HHH----
Q ss_conf 7782397999999999999866146776707997378855778999999861---898531257644334---676----
Q gi|254780552|r 27 LEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL---GVNFRSTSGPVIAKA---GDL---- 96 (334)
Q Consensus 27 l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l---~~~~~~~s~~~~~~~---~dl---- 96 (334)
-.|+|||......++..++..-. .-.++|++|.+||||..+|+.|=... +.+|+.+|...+... +++
T Consensus 185 ~~elIG~S~~m~~l~~~i~~vA~---sd~pVLI~GEtGTGKelvAr~IH~~S~R~~~Pfv~vNCaalpe~l~EseLFGh~ 261 (510)
T PRK05022 185 QGEMIGQSPAMQQLKKEIEVVAA---SDLNVLITGETGVGKELVARAIHQASPRAVKPLVYLNCAALPESLAESELFGHV 261 (510)
T ss_pred CCCEEECCHHHHHHHHHHHHHHC---CCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHCCCC
T ss_conf 89752089999999999999968---999889889898139999999996688789985788899998567899865977
Q ss_pred HHHH-----------HHHHCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCCCC
Q ss_conf 6666-----------64101637888757616989999999986347510025678765200046674005520455433
Q gi|254780552|r 97 AALL-----------TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL 165 (334)
Q Consensus 97 ~~~~-----------~~~~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~~~ 165 (334)
.+.+ ..+ .+..||+|||..++...|..||.++|++.+.= ++.. +..++ .|-+|+||++.-+
T Consensus 262 kGaFtGA~~~r~G~fe~A-~gGTLfLDEI~~Lpl~~Q~KLLrvLq~g~iqr-vG~~---~~~~v---dvRIIAATnrdL~ 333 (510)
T PRK05022 262 KGAFTGAISNRSGKFELA-DGGTLFLDEIGELPLALQAKLLRVLQYGEIQR-VGSD---RSLRV---DVRVIAATNRDLR 333 (510)
T ss_pred CCCCCCCCCCCCCCEEEC-CCCEEEEECHHHCCHHHHHHHHHHHHCCEEEE-CCCC---CEEEE---EEEEEEECCCCHH
T ss_conf 788688655678810177-89879875745499999999999984795885-5899---46666---6899960783599
Q ss_pred -------CCHHHHHCCC-CEEECCCCC--HHHHHHH----HHHHHHHCC---CHHHHHHHHHHHCCC-CCCHHHHHHHHH
Q ss_conf -------5545442012-067326454--7999998----777654121---011111112332022-101567887775
Q gi|254780552|r 166 -------LTNPLQDRFG-IPIRLNFYE--IEDLKTI----VQRGAKLTG---LAVTDEAACEIAMRS-RGTPRIAGRLLR 227 (334)
Q Consensus 166 -------l~~~l~sR~~-~~~~~~~~~--~~el~~i----l~~~~~~~~---i~~~~~al~~ia~~s-~Gd~R~AlnlLe 227 (334)
.-.-|--|.. +.+.+.++. .+|+..+ +++.+...+ +.++++|+..+..+. -|+.|-.-|.++
T Consensus 334 ~~V~~G~FR~DLYyRLsv~~I~vPPLRER~eDI~lLa~~FLe~~~~~~g~~~~~ls~eAl~~L~~Y~WPGNVRELenvIe 413 (510)
T PRK05022 334 EEVLAGRFRADLYHRLSVFPLPVPPLRERGDDVLLLAGYFLEQNRLRLGLSSLRLSPDAQAALLQYDWPGNVRELEHVIS 413 (510)
T ss_pred HHHHCCCHHHHHHHHHHCCCCCCCCHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf 99883963899998762040348086555540999999999999998298989888999999970999978999999999
Q ss_pred HHHHHHHH
Q ss_conf 43334554
Q gi|254780552|r 228 RVRDFAEV 235 (334)
Q Consensus 228 ~v~d~a~~ 235 (334)
++.-.|..
T Consensus 414 RA~lla~~ 421 (510)
T PRK05022 414 RAALLARA 421 (510)
T ss_pred HHHHHHCC
T ss_conf 99997156
No 163
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.49 E-value=1.3e-12 Score=96.67 Aligned_cols=211 Identities=20% Similarity=0.222 Sum_probs=127.5
Q ss_pred HHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHC---CCCCCCCCCCCCCCH---HHHH---
Q ss_conf 7782397999999999999866146776707997378855778999999861---898531257644334---6766---
Q gi|254780552|r 27 LEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL---GVNFRSTSGPVIAKA---GDLA--- 97 (334)
Q Consensus 27 l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l---~~~~~~~s~~~~~~~---~dl~--- 97 (334)
...+||+......+...+...-. .-.++|++|++||||..+|+.|-... +.+|+.+|+..+... .++-
T Consensus 138 ~~~liG~S~am~~v~~~i~~~A~---s~~pVLI~GE~GTGK~~~Ar~IH~~S~r~~~pfv~vnC~~l~~~l~eseLFG~~ 214 (441)
T PRK10365 138 QFGMVGKSPAMQHLLSEIALVAP---SEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHE 214 (441)
T ss_pred CCCCEECCHHHHHHHHHHHHHHC---CCCCEEEECCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHCCCC
T ss_conf 57866689999999999999848---899489989998109999999996578778980798789898455589861775
Q ss_pred -HHHHHH----------HCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCCC--
Q ss_conf -666641----------0163788875761698999999998634751002567876520004667400552045543--
Q gi|254780552|r 98 -ALLTNL----------EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVG-- 164 (334)
Q Consensus 98 -~~~~~~----------~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~~-- 164 (334)
+.++.. ..+..||+|||+.++...|..||.+++++.+.-+-+ .+.+.. ++-+|+||++.-
T Consensus 215 ~gaftga~~~~~g~~~~A~gGTLfLdeI~~l~~~~Q~kLl~~l~~~~~~~~g~----~~~~~~---d~RiIaat~~~l~~ 287 (441)
T PRK10365 215 KGAFTGADKRREGRFVEADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGS----NQTISV---DVRLIAATHRDLAA 287 (441)
T ss_pred CCCCCCCCCCCCCCEEECCCCEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCC----CCEEEC---CCEEEECCCCCHHH
T ss_conf 56878965346898778899825502315299999999998777521000588----734413---63799837889999
Q ss_pred -----CCCHHHHHCCC-CEEECCCCC--HHHHHHHH----HHHHHHCCC---HHHHHHHHHHHCCC-CCCHHHHHHHHHH
Q ss_conf -----35545442012-067326454--79999987----776541210---11111112332022-1015678877754
Q gi|254780552|r 165 -----LLTNPLQDRFG-IPIRLNFYE--IEDLKTIV----QRGAKLTGL---AVTDEAACEIAMRS-RGTPRIAGRLLRR 228 (334)
Q Consensus 165 -----~l~~~l~sR~~-~~~~~~~~~--~~el~~il----~~~~~~~~i---~~~~~al~~ia~~s-~Gd~R~AlnlLe~ 228 (334)
....-|.-|+. +.+++.|+. .+|+..++ .+.+...+. .++++|+..+..+. -|+.|-.-|.+++
T Consensus 288 ~v~~g~Fr~dLy~rL~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvREL~n~ier 367 (441)
T PRK10365 288 EVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVER 367 (441)
T ss_pred HHHCCCCHHHHHHHHCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 98819825899988601113782600062009999999999999984999888899999999709999899999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 3334554158864277878765
Q gi|254780552|r 229 VRDFAEVAHAKTITREIADAAL 250 (334)
Q Consensus 229 v~d~a~~~~~~~i~~~~~~~~l 250 (334)
+.-. .....|+.++....+
T Consensus 368 a~~~---~~~~~i~~~~l~~~~ 386 (441)
T PRK10365 368 AVVL---LTGEYISERELPLAI 386 (441)
T ss_pred HHHH---CCCCCCCHHHCCHHH
T ss_conf 9995---789868846575433
No 164
>pfam05673 DUF815 Protein of unknown function (DUF815). This family consists of several bacterial proteins of unknown function.
Probab=99.49 E-value=8.3e-13 Score=97.84 Aligned_cols=189 Identities=23% Similarity=0.284 Sum_probs=118.6
Q ss_pred HHCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCC---CCCCCCCCCCCCCHHHH
Q ss_conf 750789877823979999999999998661467767079973788557789999998618---98531257644334676
Q gi|254780552|r 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG---VNFRSTSGPVIAKAGDL 96 (334)
Q Consensus 20 ~~lRP~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~---~~~~~~s~~~~~~~~dl 96 (334)
....|-.+++++|-+..++.+..=..+ ..+|.+-.|+|+||.+||||+|+.+.+-+++. ..++++....+....++
T Consensus 20 ~~~d~v~l~~L~Gie~Qk~~l~~NT~~-F~~G~pAnnvLLwG~RGtGKSSlVKall~~~~~~gLrlIEv~k~~L~~Lp~i 98 (248)
T pfam05673 20 PHPDPVDLDDLVGIDRQKEALLRNTEQ-FLAGLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVDKDDLGDLPDI 98 (248)
T ss_pred CCCCCCCHHHHCCHHHHHHHHHHHHHH-HHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECHHHHCCHHHH
T ss_conf 788989988934939999999999999-9808986136767689898889999999986314956999878887219999
Q ss_pred HHHHHHHHCCCHHHHHHHHHCCHH--HHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECC-CCCCC--------
Q ss_conf 666664101637888757616989--9999999863475100256787652000466740055204-55433--------
Q gi|254780552|r 97 AALLTNLEDRDVLFIDEIHRLSII--VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAAT-TRVGL-------- 165 (334)
Q Consensus 97 ~~~~~~~~~~~vlfiDEihrl~~~--~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~AT-t~~~~-------- 165 (334)
...+.....+-|||+|.. .|... .--.|-.++|- .+. .- |.=++|-|| |+-+.
T Consensus 99 ~~~l~~~~~kFIiF~DDL-SFe~~d~~yk~LKs~LeG-~l~----~~----------p~NvliYaTSNRRHLi~e~~~d~ 162 (248)
T pfam05673 99 VDLLRGRPYRFILFCDDL-SFEEGESSYKALKSVLEG-GLE----AR----------PDNVLIYATSNRRHLIPEYMSDN 162 (248)
T ss_pred HHHHHCCCCCEEEEECCC-CCCCCCHHHHHHHHHHCC-CCC----CC----------CCEEEEEEECCCHHCCCHHHCCC
T ss_conf 999964997579996355-767897369999999657-644----68----------87389998427000363332347
Q ss_pred -----CC--------HHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHH-----HHHHHHCCCCCCHHHHHHH
Q ss_conf -----55--------454420120673264547999998777654121011111-----1123320221015678877
Q gi|254780552|r 166 -----LT--------NPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDE-----AACEIAMRSRGTPRIAGRL 225 (334)
Q Consensus 166 -----l~--------~~l~sR~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~-----al~~ia~~s~Gd~R~Alnl 225 (334)
|. -.|-+||++.+-|.+.+.++-.+|++..++..+++++++ |+..-..+..=+.|.|-..
T Consensus 163 ~~~~ei~~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~~~~~~~e~l~~~Al~wa~~rg~rSGR~A~QF 240 (248)
T pfam05673 163 EGDGEIHPGDAVEEKLSLSDRFGLWLGFHPFDQDEYLAIVRGYAARLGLPLDEEELRREALQWALTRGGRSGRTARQF 240 (248)
T ss_pred CCCCCCCCCHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 774436725577745348986771785079999999999999999829999989999999999998389858879999
No 165
>pfam07724 AAA_2 AAA domain (Cdc48 subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=99.47 E-value=1e-13 Score=103.45 Aligned_cols=103 Identities=24% Similarity=0.295 Sum_probs=68.8
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHCCC---CCCCCCCCCCCCHHHHHH---------------HHH---HHHCCCHHHH
Q ss_conf 7670799737885577899999986189---853125764433467666---------------666---4101637888
Q gi|254780552|r 53 ALDHVLFVGPPGLGKTTLAQVVARELGV---NFRSTSGPVIAKAGDLAA---------------LLT---NLEDRDVLFI 111 (334)
Q Consensus 53 ~~~h~Lf~GPpG~GKTtlA~iiA~~l~~---~~~~~s~~~~~~~~dl~~---------------~~~---~~~~~~vlfi 111 (334)
++.++||.||+|||||.+|+.+|+.++. ++..+++..+.....+.. .++ .-.+.+|+|+
T Consensus 2 p~~~~l~~GPsGvGKT~lAk~la~~l~~~~~~~i~~dm~e~~~~~~v~~l~g~~~gyvg~~~~G~l~~~v~~~p~~Vill 81 (168)
T pfam07724 2 PIGSFLFLGPTGVGKTELAKALAELLFGDERALIRIDMSEYMEEHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSIVLI 81 (168)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCEEEE
T ss_conf 83799988989989999999999996798534488557565425699987058998726242650789998389848986
Q ss_pred HHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCC
Q ss_conf 7576169899999999863475100256787652000466740055204554
Q gi|254780552|r 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163 (334)
Q Consensus 112 DEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~ 163 (334)
|||+..++.+|+.||+.+|++.+.- . ...+++.....+|. |+..
T Consensus 82 DEIeKa~~~V~~~LL~ild~g~~~d--~-----~g~~v~~~n~i~i~-Tsn~ 125 (168)
T pfam07724 82 DEIEKAHPGVQNDLLQILEGGTLTD--K-----QGRKVDFRNTLFIM-TGNF 125 (168)
T ss_pred HHHHHHCHHHHHHHHHHCCCCCEEC--C-----CCCEEECCCEEEEE-CCCC
T ss_conf 5776658999999998705870636--9-----99678446479997-6873
No 166
>KOG0726 consensus
Probab=99.47 E-value=1.7e-13 Score=101.97 Aligned_cols=149 Identities=23% Similarity=0.364 Sum_probs=99.1
Q ss_pred CCHHHHCCHHHHHHHHHHHHHHHHHC--------CCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCC------
Q ss_conf 98778239799999999999986614--------6776707997378855778999999861898531257644------
Q gi|254780552|r 25 RTLEEFTGQVEACSNLKVFIEAAKAR--------AEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------ 90 (334)
Q Consensus 25 ~~l~dviGQ~~~~~~l~~~i~a~~~~--------~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~~~~------ 90 (334)
.+++|+-|.+..+..++..++--..+ -+++.-+|+||+||||||.||+++|+.....|..+-|+.+
T Consensus 182 Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQkylG 261 (440)
T KOG0726 182 ETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLG 261 (440)
T ss_pred HHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC
T ss_conf 11134425789999999863388898789997288999705886799975368888772455212455650899998736
Q ss_pred CCHHHHHHHHHHHHC--CCHHHHHHHHHCC-----------HHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEE
Q ss_conf 334676666664101--6378887576169-----------899999999863475100256787652000466740055
Q gi|254780552|r 91 AKAGDLAALLTNLED--RDVLFIDEIHRLS-----------IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLI 157 (334)
Q Consensus 91 ~~~~dl~~~~~~~~~--~~vlfiDEihrl~-----------~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI 157 (334)
++++-++.+|..+.+ .+|+|||||+... +..|-.+|..+.. + .|+..+ .++.+|
T Consensus 262 dGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQ--l-----dGFdsr------gDvKvi 328 (440)
T KOG0726 262 DGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQ--L-----DGFDSR------GDVKVI 328 (440)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH--C-----CCCCCC------CCEEEE
T ss_conf 551999999988875298269864001104521347885078999999999874--2-----686656------775899
Q ss_pred ECCCCCCCCCHHHHH--CCCCEEECCCCCHH
Q ss_conf 204554335545442--01206732645479
Q gi|254780552|r 158 AATTRVGLLTNPLQD--RFGIPIRLNFYEIE 186 (334)
Q Consensus 158 ~ATt~~~~l~~~l~s--R~~~~~~~~~~~~~ 186 (334)
.||++...|.|+|.. |....+.|...+..
T Consensus 329 mATnrie~LDPaLiRPGrIDrKIef~~pDe~ 359 (440)
T KOG0726 329 MATNRIETLDPALIRPGRIDRKIEFPLPDEK 359 (440)
T ss_pred EECCCCCCCCHHHCCCCCCCCCCCCCCCCHH
T ss_conf 7416534467755278754311125797556
No 167
>PRK09087 hypothetical protein; Validated
Probab=99.47 E-value=7.8e-13 Score=98.00 Aligned_cols=198 Identities=17% Similarity=0.180 Sum_probs=130.7
Q ss_pred CCHHHH-CCH--HHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 987782-397--99999999999986614677670799737885577899999986189853125764433467666666
Q gi|254780552|r 25 RTLEEF-TGQ--VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLT 101 (334)
Q Consensus 25 ~~l~dv-iGQ--~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~~~~~~~~dl~~~~~ 101 (334)
.++++| ||. +.++.-+..+ - +++.+.+.+|||+|+|||-|+++.++..+..+.... .+. .+.. .
T Consensus 18 ~~~dnF~vs~~N~~a~~~l~~~----~--~w~~~~~~L~Gp~gsGKTHL~~~~~~~~~a~~~~~~--~~~--~~~~---~ 84 (226)
T PRK09087 18 YGRDDLVVTESNRAAVSLVDRW----P--NWPSPVVVLAGPVGSGKTHLASIWREKADALLVHPN--EIG--SDAA---N 84 (226)
T ss_pred CCCCCEEECCCHHHHHHHHHHC----C--CCCCCEEEEECCCCCCHHHHHHHHHHHHCCEEECHH--HCC--HHHH---H
T ss_conf 8733647757699999999847----2--677775899899999886999999998099683668--747--4667---6
Q ss_pred HHHCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCCCCC---CHHHHHCCC--C
Q ss_conf 41016378887576169899999999863475100256787652000466740055204554335---545442012--0
Q gi|254780552|r 102 NLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL---TNPLQDRFG--I 176 (334)
Q Consensus 102 ~~~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~~~l---~~~l~sR~~--~ 176 (334)
..... .++||.++..+- .|++|+-....-+ .. ....++.+.+.|..+ .+=|+||+. .
T Consensus 85 ~~~~~-~~~idd~d~~~~-dEe~LFhl~N~~~-----~~-----------~~~LLlts~~~p~~l~~~L~DL~SRL~~~~ 146 (226)
T PRK09087 85 AAAER-PVLIEDIDAGGF-DETGLFHLINSVR-----QA-----------GTSLLMTSRLWPSAWNVKLPDLKSRLKAAT 146 (226)
T ss_pred HHCCC-CEEEECCCCCCC-CHHHHHHHHHHHH-----HC-----------CCEEEEECCCCHHHCCCCCHHHHHHHHCCE
T ss_conf 53279-889974877774-7899999999998-----53-----------987999889895666762468999985785
Q ss_pred EEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 673264547999998777654121011111112332022101567887775433345541588642778787654210
Q gi|254780552|r 177 PIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 (334)
Q Consensus 177 ~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~Gd~R~AlnlLe~v~d~a~~~~~~~i~~~~~~~~l~~~~ 254 (334)
++++.+++.+.+..++.+.+...++.++++++.+|+++.+=|...+..+++.+ |.+.+.....||...+++++..++
T Consensus 147 ~~~I~~pdD~ll~~~L~k~~~~r~l~l~~~v~~yll~r~~Rs~~~l~~~l~~L-D~~SL~~kr~ITiplikevL~~l~ 223 (226)
T PRK09087 147 VVEIGEPDDALLSGVIFKLFADRQLYVEPHVVYYLVSRMERSLFAAQTIVERL-DRLALERKSRITRALAAEVLNEMG 223 (226)
T ss_pred EEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHH-HHHHHHCCCCCCHHHHHHHHHHHC
T ss_conf 79835999899999999998757657888899999984588999999999999-999998189998999999998511
No 168
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN; InterPro: IPR013462 The GvpN protein is associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy , . It belongs to a larger family of ATPases .; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0031412 gas vesicle organization and biogenesis, 0031411 gas vesicle.
Probab=99.46 E-value=5.1e-13 Score=99.10 Aligned_cols=176 Identities=24% Similarity=0.332 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHH-----------------
Q ss_conf 999999999866146776707997378855778999999861898531257644334676666-----------------
Q gi|254780552|r 37 CSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAAL----------------- 99 (334)
Q Consensus 37 ~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~~~~~~~~dl~~~----------------- 99 (334)
..+...|++++. ++=|.||.||||||||.-+|++++-|...++|..-=+.+||.+-
T Consensus 11 ~~R~l~yL~~G~-------PvHl~GPaG~GKT~LA~hvA~~r~RPV~l~~Gd~eL~~~DLvG~~~g~~~~kv~DqfihnV 83 (265)
T TIGR02640 11 TSRALRYLKSGY-------PVHLRGPAGTGKTTLAMHVARKRDRPVVLINGDAELTTSDLVGSYAGYTRKKVVDQFIHNV 83 (265)
T ss_pred HHHHHHHHCCCC-------CEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEEECCEEEE
T ss_conf 998766322788-------6674478885568999999973689689986582326544231546752222320121113
Q ss_pred ----------------HHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCC
Q ss_conf ----------------6641016378887576169899999999863475100256787652000466740055204554
Q gi|254780552|r 100 ----------------LTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163 (334)
Q Consensus 100 ----------------~~~~~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~ 163 (334)
..+.++|--|.=||-.|-.+...+.||+++|++-+.+ -++....+-+++. |.|-.|+.-|-.
T Consensus 84 ~K~~d~~~~~W~D~rLt~Av~eG~TLVYdEF~RskP~~nNVLLSvlEE~vL~L-Pg~~~~~~Yv~Vh-P~FR~IfTSNp~ 161 (265)
T TIGR02640 84 VKLEDIVRQNWVDNRLTLAVREGFTLVYDEFTRSKPETNNVLLSVLEEGVLEL-PGKRGESRYVDVH-PEFRVIFTSNPV 161 (265)
T ss_pred ECCCCCCCCCCCCCHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHCC-CCCCCCCCCEEEC-CCCCEEECCCCC
T ss_conf 42512200266783578997569727664757886204565675555232158-8878778722578-870246314870
Q ss_pred C-----CCCHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHH------------CCCCC-CHHHHHHH
Q ss_conf 3-----355454420120673264547999998777654121011111112332------------02210-15678877
Q gi|254780552|r 164 G-----LLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIA------------MRSRG-TPRIAGRL 225 (334)
Q Consensus 164 ~-----~l~~~l~sR~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia------------~~s~G-d~R~Alnl 225 (334)
. .=-.||.||. +-+.++||+.+--.+|+... .+++++....|. ..+-| ++|++|=+
T Consensus 162 EYAGVh~~QDALlDRL-~ti~~D~~D~~~e~ai~~~~-----t~~~~~~a~~IV~lv~~~R~a~g~e~~~Gl~~RA~lMi 235 (265)
T TIGR02640 162 EYAGVHETQDALLDRL-VTISMDYPDEDTETAILRAK-----TDVAEESAATIVRLVRELRLASGDEKTSGLSLRASLMI 235 (265)
T ss_pred CCCCCCCHHHHHHHHH-CCCCCCCCCHHHHHHHHHHH-----HCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
T ss_conf 1057677166776644-00457854447899999986-----06124678999999999842125533374368999999
Q ss_pred HH
Q ss_conf 75
Q gi|254780552|r 226 LR 227 (334)
Q Consensus 226 Le 227 (334)
-+
T Consensus 236 A~ 237 (265)
T TIGR02640 236 AE 237 (265)
T ss_pred HH
T ss_conf 98
No 169
>PRK06620 hypothetical protein; Validated
Probab=99.45 E-value=2.3e-12 Score=95.18 Aligned_cols=194 Identities=14% Similarity=0.175 Sum_probs=124.4
Q ss_pred CHHHH-C--CHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 87782-3--97999999999999866146776707997378855778999999861898531257644334676666664
Q gi|254780552|r 26 TLEEF-T--GQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTN 102 (334)
Q Consensus 26 ~l~dv-i--GQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~~~~~~~~dl~~~~~~ 102 (334)
+++|| | .++.++..++.|-.+.. -+..-..+++|||+|+|||.|+++.++..+..+. ++... ..+ .
T Consensus 14 ~~~dF~vs~~N~~A~~~i~~wp~~~~-~~~~~~~l~I~Gp~gSGKTHL~~i~~~~~~a~~~--~~~~~--~~~------~ 82 (214)
T PRK06620 14 HPDEFIVSSSNDQAYNIIKNWQCMFG-VNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYII--KDIFF--NEE------I 82 (214)
T ss_pred CCCCEEECCCHHHHHHHHHHCHHCCC-CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCEEE--CHHHC--CHH------H
T ss_conf 86586876869999999983630256-6865555999879999889999999998285881--51214--587------8
Q ss_pred HHCCCHHHHHHHHHCCHHHHHHHHHHH-HCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCCCCC-CHHHHHCCC--CEE
Q ss_conf 101637888757616989999999986-3475100256787652000466740055204554335-545442012--067
Q gi|254780552|r 103 LEDRDVLFIDEIHRLSIIVEEILYPAM-EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL-TNPLQDRFG--IPI 178 (334)
Q Consensus 103 ~~~~~vlfiDEihrl~~~~q~~Ll~~m-E~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~~~l-~~~l~sR~~--~~~ 178 (334)
....+.++||.++.++....-.++-.. +.++ +.++.+...|..+ .+=|+||+. .+.
T Consensus 83 ~~~~~~~iiddid~~~e~~lfhlfN~~~~~~~--------------------~llits~~~p~~~~L~DL~SRl~~~~~~ 142 (214)
T PRK06620 83 LEKYNAFIIEDIENWQEPALLHIFNIINEKQK--------------------YLLLTSSDKSRNFTLPDLSSRIKSVLSI 142 (214)
T ss_pred HHHCCCEEEECCCCCCHHHHHHHHHHHHHCCC--------------------EEEEEECCCCCCCCCCCHHHHHHCCCEE
T ss_conf 84379379846775746799999999971598--------------------7999827985224535789998546443
Q ss_pred ECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 3264547999998777654121011111112332022101567887775433345541588642778787654
Q gi|254780552|r 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251 (334)
Q Consensus 179 ~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~Gd~R~AlnlLe~v~d~a~~~~~~~i~~~~~~~~l~ 251 (334)
.+++++.+.+..++.+.+...++.++++++.+|+++.+=+.+.+..+++.+ |.+.+.....||...++++++
T Consensus 143 ~i~~PdD~l~~~ll~k~~~~r~i~i~~~vi~yl~~ri~Rs~~~l~~~v~~l-d~~sl~~kr~Iti~likevL~ 214 (214)
T PRK06620 143 LLNSPDDELIKILIFKHFSISSVTISRQIIDFLLVNLPREYSKIIEILENI-NYFALISKRKITISLVKEVLN 214 (214)
T ss_pred ECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHH-HHHHHHCCCCCCHHHHHHHHC
T ss_conf 326989899999999999986998875599999998517899999999999-999998399988999999839
No 170
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I; InterPro: IPR011775 This entry represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll . This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. It is also found in certain archaea not known to make chlorins.; GO: 0005524 ATP binding, 0016851 magnesium chelatase activity, 0006779 porphyrin biosynthetic process.
Probab=99.44 E-value=1.3e-12 Score=96.66 Aligned_cols=204 Identities=27% Similarity=0.396 Sum_probs=132.3
Q ss_pred HHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHC-------CCCCCCC--------------
Q ss_conf 7782397999999999999866146776707997378855778999999861-------8985312--------------
Q gi|254780552|r 27 LEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-------GVNFRST-------------- 85 (334)
Q Consensus 27 l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l-------~~~~~~~-------------- 85 (334)
|.-+|||++.|..|- +... +..++-++..|-.||||+|..|++|.-| ||+|-..
T Consensus 3 F~AIVGQ~emKlAll--L~vi---dP~IGGVmvmGdRGTgKSTavRALAalLP~IkaVagcP~n~~Ps~~~~~c~e~r~~ 77 (340)
T TIGR02030 3 FSAIVGQEEMKLALL--LTVI---DPKIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSAPSDREELCEEVRIL 77 (340)
T ss_pred CEEEECHHHHHHHHH--HEEE---CCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHH
T ss_conf 315641688877775--2000---68856288867789835689999997499407861768788888861357677775
Q ss_pred ---CC-----CCCCC------------------HHHHHHHH------------HHHHCCCHHHHHHHHHCCHHHHHHHHH
Q ss_conf ---57-----64433------------------46766666------------641016378887576169899999999
Q gi|254780552|r 86 ---SG-----PVIAK------------------AGDLAALL------------TNLEDRDVLFIDEIHRLSIIVEEILYP 127 (334)
Q Consensus 86 ---s~-----~~~~~------------------~~dl~~~~------------~~~~~~~vlfiDEihrl~~~~q~~Ll~ 127 (334)
+| +.+++ .-|+...+ ..++ +.+|+|||++=|
T Consensus 78 ~~~~Gkt~~~~~i~~pvpvVDLPLGaTEDRVcGtlDIerALt~GvkAFePGLLArAN-RG~LYiDEVNLL---------- 146 (340)
T TIGR02030 78 EDSSGKTKKLAVIEKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARAN-RGYLYIDEVNLL---------- 146 (340)
T ss_pred HHCCCCCCCCEEEECCCCEEECCCCCCCCCEECHHHHHHHHHCCCCCCCCCCHHHHC-CCCEEEEEEHHH----------
T ss_conf 312686567515515765364798862131344024767750472103663046661-784255210001----------
Q ss_pred HHHCCCCCCCCCCCCCCC--------EEECCCCCCEEEECCC-CCCCCCHHHHHCCCCEEECCCCCH-HHHHHHHHH---
Q ss_conf 863475100256787652--------0004667400552045-543355454420120673264547-999998777---
Q gi|254780552|r 128 AMEDFQLDLMVGEGPSAR--------SVKINLSRFTLIAATT-RVGLLTNPLQDRFGIPIRLNFYEI-EDLKTIVQR--- 194 (334)
Q Consensus 128 ~mE~~~i~i~~~~~~~a~--------~~~~~~~~f~lI~ATt-~~~~l~~~l~sR~~~~~~~~~~~~-~el~~il~~--- 194 (334)
||+-+|+.+..+.+-. +++ ...+|.|+|.-| |-+.|=|-|+|||++..+..-... ++-.+|++|
T Consensus 147 --eDHlVDvLLDvAasG~NvVEREG~SiR-HPARFVLVGSGNPEEGeLRPQLLDRFGlhaeirt~rdve~RVeiv~rR~e 223 (340)
T TIGR02030 147 --EDHLVDVLLDVAASGVNVVEREGVSIR-HPARFVLVGSGNPEEGELRPQLLDRFGLHAEIRTVRDVEERVEIVKRRDE 223 (340)
T ss_pred --HHHHHHHHHHHCCCCCEEEEECCEEEE-CCCCEEEECCCCCCCCCCCCHHHHHCCCEEEEECCCCHHHHHHHEEEHHH
T ss_conf --245665665220478305863560230-37635871578887666674015244652787226772220122010033
Q ss_pred -------------------------HHHH-CCCHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHHHHHHHCCCCCCH
Q ss_conf -------------------------6541-21011111112332022-----1015678877754333455415886427
Q gi|254780552|r 195 -------------------------GAKL-TGLAVTDEAACEIAMRS-----RGTPRIAGRLLRRVRDFAEVAHAKTITR 243 (334)
Q Consensus 195 -------------------------~~~~-~~i~~~~~al~~ia~~s-----~Gd~R~AlnlLe~v~d~a~~~~~~~i~~ 243 (334)
+.+. -.+.++++.+..+|..| +| .|--|.++..++..|..+|.+.+|.
T Consensus 224 yDadp~aF~ekw~~E~~~Lq~kI~~Aq~~LPqv~~p~~vl~k~aelC~~L~vDG-lRGeltl~RAA~AlAAfEGr~eVtv 302 (340)
T TIGR02030 224 YDADPFAFVEKWAKEDEKLQAKIVNAQALLPQVKLPDDVLYKVAELCVELDVDG-LRGELTLARAAKALAAFEGREEVTV 302 (340)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCC-CCHHHHHHHHHHHHHHHHCCCCCCH
T ss_conf 177885345557888999999999999748801188610210535543206896-3047899999999987606300035
Q ss_pred HHHHHHH
Q ss_conf 7878765
Q gi|254780552|r 244 EIADAAL 250 (334)
Q Consensus 244 ~~~~~~l 250 (334)
++++.+.
T Consensus 303 ~d~rrva 309 (340)
T TIGR02030 303 DDVRRVA 309 (340)
T ss_pred HHHHHHH
T ss_conf 6788999
No 171
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.44 E-value=1.5e-11 Score=90.09 Aligned_cols=208 Identities=22% Similarity=0.321 Sum_probs=132.4
Q ss_pred CCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHC---CCCCCCCCCCCCCCH---HHH--
Q ss_conf 987782397999999999999866146776707997378855778999999861---898531257644334---676--
Q gi|254780552|r 25 RTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL---GVNFRSTSGPVIAKA---GDL-- 96 (334)
Q Consensus 25 ~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l---~~~~~~~s~~~~~~~---~dl-- 96 (334)
....++||+......++..+...-. .-.++|++|..||||-.+||.|-+.. +.+|+.+|+.++..- +++
T Consensus 138 ~~~~~liG~S~am~~l~~~i~kvA~---s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~ESELFG 214 (464)
T COG2204 138 SLGGELVGESPAMQQLRRLIAKVAP---SDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENLLESELFG 214 (464)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHC---CCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHC
T ss_conf 5567752069999999999999847---7997899778987589999999860744589925633464898887777614
Q ss_pred --HHHHHHH----------HCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCCC
Q ss_conf --6666641----------0163788875761698999999998634751002567876520004667400552045543
Q gi|254780552|r 97 --AALLTNL----------EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVG 164 (334)
Q Consensus 97 --~~~~~~~----------~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~~ 164 (334)
.+.|+.+ .++..||+|||..++...|.-||.+++++.+.-+ | +.+.++++ +-+|+||+++-
T Consensus 215 hekGAFTGA~~~r~G~fE~A~GGTLfLDEI~~mpl~~Q~kLLRvLqe~~~~rv-G---~~~~i~vd---vRiIaaT~~dL 287 (464)
T COG2204 215 HEKGAFTGAITRRIGRFEQANGGTLFLDEIGEMPLELQVKLLRVLQEREFERV-G---GNKPIKVD---VRIIAATNRDL 287 (464)
T ss_pred CCCCCCCCCCCCCCCCEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCEEEEC-C---CCCEECEE---EEEEEECCCCH
T ss_conf 56567677643457615773796587323110999999999999870706735-8---88600001---69996057789
Q ss_pred C-------CCHHHHHCCCC-EEECCCCC--HHHHH----HHHHHHHHHCC---CHHHHHHHHHHHCCC-CCCHHHHHHHH
Q ss_conf 3-------55454420120-67326454--79999----98777654121---011111112332022-10156788777
Q gi|254780552|r 165 L-------LTNPLQDRFGI-PIRLNFYE--IEDLK----TIVQRGAKLTG---LAVTDEAACEIAMRS-RGTPRIAGRLL 226 (334)
Q Consensus 165 ~-------l~~~l~sR~~~-~~~~~~~~--~~el~----~il~~~~~~~~---i~~~~~al~~ia~~s-~Gd~R~AlnlL 226 (334)
. .-.-|--|..+ .+++.++. .+|+. ..+++.|+..+ ..++++|+..+..+. -|+.|-.-|.+
T Consensus 288 ~~~v~~G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNVREL~N~v 367 (464)
T COG2204 288 EEEVAAGRFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAALLAYDWPGNVRELENVV 367 (464)
T ss_pred HHHHHCCCCHHHHHHHHCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 99988197378888652331104876223620079999999999999809998887999999997389981899999999
Q ss_pred HHHHHHHHHHCCCCCCHHH
Q ss_conf 5433345541588642778
Q gi|254780552|r 227 RRVRDFAEVAHAKTITREI 245 (334)
Q Consensus 227 e~v~d~a~~~~~~~i~~~~ 245 (334)
|++. .......|+.++
T Consensus 368 er~~---il~~~~~i~~~~ 383 (464)
T COG2204 368 ERAV---ILSEGPEIEVED 383 (464)
T ss_pred HHHH---HCCCCCCCCHHH
T ss_conf 9998---517865466544
No 172
>KOG0729 consensus
Probab=99.43 E-value=4.1e-13 Score=99.73 Aligned_cols=175 Identities=23% Similarity=0.328 Sum_probs=110.9
Q ss_pred CHHHHCCHHHHHHHHHHHHHHHHHC--------CCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCC------C
Q ss_conf 8778239799999999999986614--------6776707997378855778999999861898531257644------3
Q gi|254780552|r 26 TLEEFTGQVEACSNLKVFIEAAKAR--------AEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI------A 91 (334)
Q Consensus 26 ~l~dviGQ~~~~~~l~~~i~a~~~~--------~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~~~~------~ 91 (334)
+.+||-|-++-++.++..++.-..+ -.++..+|+|||||||||.+||.+|+-.+..|+.+-|+.+ +
T Consensus 175 TY~DvGGCKeqIEklREVVE~PlL~PErfv~LGIdPPKGvllyGPPGtGKTL~ARAVANRTdAcFIRViGSELVQKYvGE 254 (435)
T KOG0729 175 TYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGE 254 (435)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHH
T ss_conf 30345366999999999884325588888752789987337868999861089998745667458763118999998624
Q ss_pred CHHHHHHHHHHH--HCCCHHHHHHHHHCC-----------HHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEE
Q ss_conf 346766666641--016378887576169-----------8999999998634751002567876520004667400552
Q gi|254780552|r 92 KAGDLAALLTNL--EDRDVLFIDEIHRLS-----------IIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIA 158 (334)
Q Consensus 92 ~~~dl~~~~~~~--~~~~vlfiDEihrl~-----------~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ 158 (334)
++.-++.++..+ +.-+|+|.|||+.+. ...|-..|..+.. + .|+..+. ...+..
T Consensus 255 GARMVRElFeMAr~KKACiiFFDEiDAiGGaRFDDg~ggDNEVQRTMLEli~Q--L-----DGFDpRG------NIKVlm 321 (435)
T KOG0729 255 GARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQ--L-----DGFDPRG------NIKVLM 321 (435)
T ss_pred HHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHH--C-----CCCCCCC------CEEEEE
T ss_conf 68999999998523652799841010226720357888727999999999986--0-----3778888------758986
Q ss_pred CCCCCCCCCHHHHH--CCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHH-HHHHHCCC
Q ss_conf 04554335545442--01206732645479999987776541210111111-12332022
Q gi|254780552|r 159 ATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEA-ACEIAMRS 215 (334)
Q Consensus 159 ATt~~~~l~~~l~s--R~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~a-l~~ia~~s 215 (334)
|||+|.-|.++|+. |......|...+.+--..|++-.++ ..+++.+. .+.||+.+
T Consensus 322 ATNRPdtLDpALlRPGRlDRKVEF~LPDlegR~~I~kIHak--sMsverdIR~eLlarLC 379 (435)
T KOG0729 322 ATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAK--SMSVERDIRFELLARLC 379 (435)
T ss_pred ECCCCCCCCHHHCCCCCCCCCEECCCCCCCCCCEEEEEECC--CCCCCCCHHHHHHHHHC
T ss_conf 34898876876628764231121058762355125777411--14423221699998658
No 173
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.43 E-value=3.3e-12 Score=94.16 Aligned_cols=194 Identities=19% Similarity=0.236 Sum_probs=120.0
Q ss_pred CHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHC---CCCCCCCCCCCCCCH---HHH---
Q ss_conf 87782397999999999999866146776707997378855778999999861---898531257644334---676---
Q gi|254780552|r 26 TLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL---GVNFRSTSGPVIAKA---GDL--- 96 (334)
Q Consensus 26 ~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l---~~~~~~~s~~~~~~~---~dl--- 96 (334)
.-+++||+......+...+...-. .-.++|++|.+||||+++|+.|-..- +.+|+.+++..+... ..+
T Consensus 4 ~~~~liG~S~~m~~v~~~~~~~A~---~~~pVLI~GE~GtGK~~~Ar~IH~~S~r~~~pfi~v~C~~l~~~~~e~~LFG~ 80 (325)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSHLAP---LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGH 80 (325)
T ss_pred CCCCCEECCHHHHHHHHHHHHHHC---CCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHCCC
T ss_conf 789985899999999999999968---89998988989837999999999658867999778877989977889987277
Q ss_pred ------------HHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCCC
Q ss_conf ------------66666410163788875761698999999998634751002567876520004667400552045543
Q gi|254780552|r 97 ------------AALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVG 164 (334)
Q Consensus 97 ------------~~~~~~~~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~~ 164 (334)
.+.+..++ +..||+|||+.++...|+.|+.++|++.+.-.-+..+ .. ..+.+|++|+...
T Consensus 81 ~~g~~~~~~~~~~g~le~a~-gGTL~L~eI~~l~~~~Q~~Ll~~l~~~~~~r~g~~~~----~~---~~~RiIa~t~~~l 152 (325)
T PRK11608 81 EAGAFTGAQKRHPGRFERAD-GGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQP----LQ---VNVRLVCATNADL 152 (325)
T ss_pred CCCCCCCCCCCCCCHHHCCC-CCEEEEECHHHCCHHHHHHHHHHHHCCCEEECCCCCC----CC---CCEEEEECCCHHH
T ss_conf 55676775324687343568-9869973745479999999999986490885799876----65---6468871332208
Q ss_pred -------CCCHHHHHCCC-CEEECCCCC--HHHHHHHH----HHHHHHCCC----HHHHHHHHHHHCCC-CCCHHHHHHH
Q ss_conf -------35545442012-067326454--79999987----776541210----11111112332022-1015678877
Q gi|254780552|r 165 -------LLTNPLQDRFG-IPIRLNFYE--IEDLKTIV----QRGAKLTGL----AVTDEAACEIAMRS-RGTPRIAGRL 225 (334)
Q Consensus 165 -------~l~~~l~sR~~-~~~~~~~~~--~~el~~il----~~~~~~~~i----~~~~~al~~ia~~s-~Gd~R~Alnl 225 (334)
.+..-|..|+. +.+++.++. .+|+..++ .+.++..+. .++++|+..+..+. -|+.|-.-|.
T Consensus 153 ~~lv~~g~fr~dLy~rL~~~~I~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvrEL~n~ 232 (325)
T PRK11608 153 PAMVNEGTFRADLLDRLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARETLLNYRWPGNIRELKNV 232 (325)
T ss_pred HHHHHHCCCHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHH
T ss_conf 99998395679998565301115868454710199999999999999829998888899999999619999659999999
Q ss_pred HHHHH
Q ss_conf 75433
Q gi|254780552|r 226 LRRVR 230 (334)
Q Consensus 226 Le~v~ 230 (334)
++++.
T Consensus 233 ierav 237 (325)
T PRK11608 233 VERSV 237 (325)
T ss_pred HHHHH
T ss_conf 99999
No 174
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.42 E-value=5.1e-12 Score=92.99 Aligned_cols=159 Identities=21% Similarity=0.304 Sum_probs=94.7
Q ss_pred HHCCHHHHHHHHHHHHHHH---------HHCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHH-----
Q ss_conf 8239799999999999986---------61467767079973788557789999998618985312576443346-----
Q gi|254780552|r 29 EFTGQVEACSNLKVFIEAA---------KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----- 94 (334)
Q Consensus 29 dviGQ~~~~~~l~~~i~a~---------~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~~~~~~~~----- 94 (334)
++.|++.+|..+-..+-.+ +.|+. .|+||.|-|||||+.+-+-+++-.... +.++|...+.++
T Consensus 204 ~I~G~~~vK~allL~L~GG~~~~~~~g~~~Rg~--ihiLLvGDPGtgKSqlLk~~~~iaprs-vytsG~gsS~aGLTaav 280 (509)
T smart00350 204 SIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGD--INILLLGDPGTAKSQLLKYVEKTAPRA-VYTTGKGSSAVGLTAAV 280 (509)
T ss_pred CCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCC--EEEEEECCCCCCHHHHHHHHHHHCCCE-EEEECCCCCCCCCEEEE
T ss_conf 323878899999999708876648988504154--149984699823629999999858860-68734445557706899
Q ss_pred --HH--------HHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCC-
Q ss_conf --76--------6666641016378887576169899999999863475100256787652000466740055204554-
Q gi|254780552|r 95 --DL--------AALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV- 163 (334)
Q Consensus 95 --dl--------~~~~~~~~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~- 163 (334)
|- .+.+. +..+.|..|||.+.++...+.+|+.+||...+.| .++- -..+++ .+-++++|+|-.
T Consensus 281 ~rd~~~ge~~leaGALV-lAD~GiccIDEfdKm~~~dr~alhEaMEQQtisi--aKaG--i~~tL~-aR~sVlAAaNP~~ 354 (509)
T smart00350 281 TRDPETREFTLEGGALV-LADNGVCCIDEFDKMDDSDRTAIHEAMEQQTISI--AKAG--ITTTLN-ARCSVLAAANPIG 354 (509)
T ss_pred EECCCCCCEEECCCCEE-CCCCCEEEEEEHHHCCHHHHHHHHHHHHHCEEEE--ECCC--EEEEEE-CCCEEEEEECCCC
T ss_conf 98178883787256412-0567547852132078778999999997487787--4375--179985-5735998655655
Q ss_pred ------------CCCCHHHHHCCCCEEECC-CCCHHHHHHHHHHHH
Q ss_conf ------------335545442012067326-454799999877765
Q gi|254780552|r 164 ------------GLLTNPLQDRFGIPIRLN-FYEIEDLKTIVQRGA 196 (334)
Q Consensus 164 ------------~~l~~~l~sR~~~~~~~~-~~~~~el~~il~~~~ 196 (334)
-.+++||+|||.+++.+. ..+.+.=..|.+.+.
T Consensus 355 g~yd~~~s~~eni~l~~~LLSRFDLIf~l~D~~~~~~D~~ia~hil 400 (509)
T smart00350 355 GRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKHVV 400 (509)
T ss_pred CCCCCCCCHHHHCCCCHHHHHHCCEEEEEECCCCHHHHHHHHHHHH
T ss_conf 6378889999946898035410238999615898788999999999
No 175
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.42 E-value=3.8e-12 Score=93.79 Aligned_cols=141 Identities=20% Similarity=0.262 Sum_probs=87.7
Q ss_pred HCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHC-CCCCCCCCCCCCCCH------HHHHHHHHH
Q ss_conf 2397999999999999866146776707997378855778999999861-898531257644334------676666664
Q gi|254780552|r 30 FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-GVNFRSTSGPVIAKA------GDLAALLTN 102 (334)
Q Consensus 30 viGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l-~~~~~~~s~~~~~~~------~dl~~~~~~ 102 (334)
++.-+++++-. +-++.. =.|++|.|||||||+.+||-++..+ +..+.+.--+-++.| -|+.+.-..
T Consensus 22 l~ERe~~i~l~---lLaala----gehvlllGPPGtAKS~larrl~~~~~~a~~FeyLltRFstPeElFGP~si~~Lk~~ 94 (498)
T PRK13531 22 LYERSHAIRLC---LLAALS----GESVFLLGPPGIAKSLIARRLKFAFQHARAFEYLMTRFSTPEEVFGPLSIQALKDE 94 (498)
T ss_pred HHHHHHHHHHH---HHHHHC----CCCEEEECCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHCCCCCHHHHHHC
T ss_conf 14469999999---999972----89469888995138899999999855740899998746988885383329987117
Q ss_pred --H--------HCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCCCC---CCHH
Q ss_conf --1--------01637888757616989999999986347510025678765200046674005520455433---5545
Q gi|254780552|r 103 --L--------EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL---LTNP 169 (334)
Q Consensus 103 --~--------~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~~~---l~~~ 169 (334)
. -.-.|.|+|||-.-|....++||..+.++... .| .. +++.|-.++|+|.|+.|. =..|
T Consensus 95 g~y~R~t~G~LP~A~iaFLDEIfKansAILNtLLtilNEr~f~----nG--~~--~~~vPL~~li~ASNElP~~~~~L~A 166 (498)
T PRK13531 95 GRYERLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERRFR----NG--AH--EEKIPMRLLVAASNELPEADSSLEA 166 (498)
T ss_pred CEEEEECCCCCCCCEEEHHHHHHHCCHHHHHHHHHHHHHHEEC----CC--CC--EECCCHHHHHHCCCCCCCCCCCHHH
T ss_conf 8489722675886613157878614889999999986464034----79--83--1304468864304679999840788
Q ss_pred HHHCCCCEEECCCCCH
Q ss_conf 4420120673264547
Q gi|254780552|r 170 LQDRFGIPIRLNFYEI 185 (334)
Q Consensus 170 l~sR~~~~~~~~~~~~ 185 (334)
|-|||-+.....+...
T Consensus 167 lyDRfL~R~~v~~v~~ 182 (498)
T PRK13531 167 LYDRMLIRLWLDKVQD 182 (498)
T ss_pred HHHHHHHHEECCCCCC
T ss_conf 8876441022313167
No 176
>KOG1514 consensus
Probab=99.38 E-value=5.2e-11 Score=86.84 Aligned_cols=204 Identities=23% Similarity=0.291 Sum_probs=123.4
Q ss_pred HHHHHHHHHHHHHHHHCCCCCC-CEEEECCCCCCHHHHHHHHHHHCC----------CCCCCCCCCCCCCHHHHHHH---
Q ss_conf 9999999999998661467767-079973788557789999998618----------98531257644334676666---
Q gi|254780552|r 34 VEACSNLKVFIEAAKARAEALD-HVLFVGPPGLGKTTLAQVVARELG----------VNFRSTSGPVIAKAGDLAAL--- 99 (334)
Q Consensus 34 ~~~~~~l~~~i~a~~~~~~~~~-h~Lf~GPpG~GKTtlA~iiA~~l~----------~~~~~~s~~~~~~~~dl~~~--- 99 (334)
+.-...+..++...... .... -|-.+|-||||||-+.+-+-++|- ..+.++||--+.++.++-..
T Consensus 402 e~E~~~I~~f~~~~i~~-~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~ 480 (767)
T KOG1514 402 ENEFSEIEDFLRSFISD-QGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWE 480 (767)
T ss_pred HHHHHHHHHHHHHHCCC-CCCCEEEEEECCCCCCCEEHHHHHHHHHHHHHHHCCCCCCCEEEECCEEECCHHHHHHHHHH
T ss_conf 68899999999976277-77740799846999883212999999999877505789860798714461588999999999
Q ss_pred -------------------HH---HHHCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEE
Q ss_conf -------------------66---41016378887576169899999999863475100256787652000466740055
Q gi|254780552|r 100 -------------------LT---NLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLI 157 (334)
Q Consensus 100 -------------------~~---~~~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI 157 (334)
++ .-+..+|+.|||.+-|-...|++||-..+ ..+ -++++.+- .-|
T Consensus 481 ~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fd-----Wpt--~~~sKLvv------i~I 547 (767)
T KOG1514 481 ALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFD-----WPT--LKNSKLVV------IAI 547 (767)
T ss_pred HCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCHHHHHCCCHHHHHHHHC-----CCC--CCCCCEEE------EEE
T ss_conf 75557430778899998654167878787799963578773520988977740-----776--78986699------995
Q ss_pred ECCCCCC-C-CCHHHHHCCCC-EEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHH
Q ss_conf 2045543-3-55454420120-67326454799999877765412101111111233202---21015678877754333
Q gi|254780552|r 158 AATTRVG-L-LTNPLQDRFGI-PIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMR---SRGTPRIAGRLLRRVRD 231 (334)
Q Consensus 158 ~ATt~~~-~-l~~~l~sR~~~-~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~---s~Gd~R~AlnlLe~v~d 231 (334)
+-|.+.+ + +.+-.-||.++ .+.|++|+.++|++|+.-..+.. -.++.+|...+|+. -.||+|.|+.+++++..
T Consensus 548 aNTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~-~~f~~~aielvarkVAavSGDaRraldic~RA~E 626 (767)
T KOG1514 548 ANTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGL-DAFENKAIELVARKVAAVSGDARRALDICRRAAE 626 (767)
T ss_pred CCCCCCHHHHHCCCHHHHCCCEEEECCCCCHHHHHHHHHHHCCCH-HHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 165647798854311233065055137788999999999860315-4314248999998877504227888899899999
Q ss_pred HHHHHCC-------CCCCHHHHHHHHHH
Q ss_conf 4554158-------86427787876542
Q gi|254780552|r 232 FAEVAHA-------KTITREIADAALLR 252 (334)
Q Consensus 232 ~a~~~~~-------~~i~~~~~~~~l~~ 252 (334)
.|.-... +.++.-++.++++.
T Consensus 627 ia~~~~~~~k~~~~q~v~~~~v~~Ai~e 654 (767)
T KOG1514 627 IAEERNVKGKLAVSQLVGILHVMEAINE 654 (767)
T ss_pred HHHHHCCCCCCCCCCEEEHHHHHHHHHH
T ss_conf 7542213455553324432999999998
No 177
>KOG0745 consensus
Probab=99.34 E-value=9.8e-12 Score=91.26 Aligned_cols=174 Identities=26% Similarity=0.408 Sum_probs=113.0
Q ss_pred CEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHH----HHHHH----HHHHH------CCCHHHHHHHHHCCH--
Q ss_conf 079973788557789999998618985312576443346----76666----66410------163788875761698--
Q gi|254780552|r 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG----DLAAL----LTNLE------DRDVLFIDEIHRLSI-- 119 (334)
Q Consensus 56 h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~~~~~~~~----dl~~~----~~~~~------~~~vlfiDEihrl~~-- 119 (334)
++|+.||.|+|||.+|..+|+-++++|....+..++.++ |+..+ +..+. ...|+||||++.+.+
T Consensus 228 NvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~~ 307 (564)
T KOG0745 228 NVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKKA 307 (564)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCEEEECCCCHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHCCEEEEEHHHHHCCCC
T ss_conf 47997788876438999999970887687325522005534542999999999972578998826738876012441367
Q ss_pred ------------HHHHHHHHHHHCCCCCCCCCCCC----CCCEEECCCCCCEEE--ECCC--------------------
Q ss_conf ------------99999999863475100256787----652000466740055--2045--------------------
Q gi|254780552|r 120 ------------IVEEILYPAMEDFQLDLMVGEGP----SARSVKINLSRFTLI--AATT-------------------- 161 (334)
Q Consensus 120 ------------~~q~~Ll~~mE~~~i~i~~~~~~----~a~~~~~~~~~f~lI--~ATt-------------------- 161 (334)
.+|.+||..+|.-.+.+ -.+++ ...++.++-....|| ||-+
T Consensus 308 ~~i~~~RDVsGEGVQQaLLKllEGtvVnV-peK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~rR~~d~slGFg~~ 386 (564)
T KOG0745 308 ESIHTSRDVSGEGVQQALLKLLEGTVVNV-PEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKIISRRLDDKSLGFGAP 386 (564)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHCCCEECC-CCCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCHHCCCCCC
T ss_conf 65454445662669999999852627702-67787778999858971366688803432356989887630000156788
Q ss_pred -----------------------------CCC-----CCCHHHHHCCCCEEECCCCCHHHHHHHHHH-----------HH
Q ss_conf -----------------------------543-----355454420120673264547999998777-----------65
Q gi|254780552|r 162 -----------------------------RVG-----LLTNPLQDRFGIPIRLNFYEIEDLKTIVQR-----------GA 196 (334)
Q Consensus 162 -----------------------------~~~-----~l~~~l~sR~~~~~~~~~~~~~el~~il~~-----------~~ 196 (334)
+.. -+.|.+.-||.++.-|..++.+.|..++.- ..
T Consensus 387 s~~~vr~~~~~~s~~~~~~~~~~~lL~~~~~~DLisfGmIPEfVGRfPVlVplh~L~~~~Lv~VLtEPknaL~~Qyk~lf 466 (564)
T KOG0745 387 SSKGVRANMATKSGVENDAEKRDELLEKVESGDLISFGMIPEFVGRFPVLVPLHSLDEDQLVRVLTEPKNALGKQYKKLF 466 (564)
T ss_pred CCCCCHHHCCCCCCCCHHHHHHHHHHHHCCCCCHHHHCCCHHHHCCCCEEEECCCCCHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 87420011034667304677889998634632135526728771665257652426888899987355466899999985
Q ss_pred HHC--CCHHHHHHHHHHHCCC--CC-CHHHHHHHHHHHH
Q ss_conf 412--1011111112332022--10-1567887775433
Q gi|254780552|r 197 KLT--GLAVTDEAACEIAMRS--RG-TPRIAGRLLRRVR 230 (334)
Q Consensus 197 ~~~--~i~~~~~al~~ia~~s--~G-d~R~AlnlLe~v~ 230 (334)
... .+.++++|+..||+.+ ++ .+|..=.++|.+.
T Consensus 467 ~~~nV~L~fTe~Al~~IAq~Al~r~TGARgLRsIlE~~L 505 (564)
T KOG0745 467 GMDNVELHFTEKALEAIAQLALKRKTGARGLRSILESLL 505 (564)
T ss_pred CCCCEEEEECHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 557746986699999999998761434678999999997
No 178
>KOG1968 consensus
Probab=99.33 E-value=4.9e-12 Score=93.14 Aligned_cols=193 Identities=20% Similarity=0.245 Sum_probs=127.6
Q ss_pred HHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHC-------C--CCCCC--EEEECCCCCCHHHHHHHHHHHCCCCCCCC
Q ss_conf 5787507898778239799999999999986614-------6--77670--79973788557789999998618985312
Q gi|254780552|r 17 ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKAR-------A--EALDH--VLFVGPPGLGKTTLAQVVARELGVNFRST 85 (334)
Q Consensus 17 ~~~~~lRP~~l~dviGQ~~~~~~l~~~i~a~~~~-------~--~~~~h--~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~ 85 (334)
.+.+..+|++..++.|+......+..++...+.. + ....+ ++++||||+|||+.|+++|+++|.+..+.
T Consensus 309 ~~~~k~~p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g~~v~E~ 388 (871)
T KOG1968 309 GWTEKYQPTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELGFKVVEK 388 (871)
T ss_pred CCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCEEEC
T ss_conf 54311265307766335203666665887622133354002686156677887317887772056766301206540104
Q ss_pred CCCCCCCHHHHHHHHHH--------------------HHCCCHHHHHHHHHCCH---HHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 57644334676666664--------------------10163788875761698---99999999863475100256787
Q gi|254780552|r 86 SGPVIAKAGDLAALLTN--------------------LEDRDVLFIDEIHRLSI---IVEEILYPAMEDFQLDLMVGEGP 142 (334)
Q Consensus 86 s~~~~~~~~dl~~~~~~--------------------~~~~~vlfiDEihrl~~---~~q~~Ll~~mE~~~i~i~~~~~~ 142 (334)
|+........+...+-+ .+..-|+++||++-+.. .....+-+.++.-
T Consensus 389 Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~~dRg~v~~l~~l~~ks---------- 458 (871)
T KOG1968 389 NASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFGEDRGGVSKLSSLCKKS---------- 458 (871)
T ss_pred CCCCCCCCCHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHC----------
T ss_conf 7543344227776640244664000111111330004666069997425544200013699999999863----------
Q ss_pred CCCEEECCCCCCEEEECCCCCCCCCHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 65200046674005520455433554544201206732645479999987776541210111111123320221015678
Q gi|254780552|r 143 SARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222 (334)
Q Consensus 143 ~a~~~~~~~~~f~lI~ATt~~~~l~~~l~sR~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~Gd~R~A 222 (334)
. -| +|.++|+-.....-..+|-.+.++|...+.+.+..-+-.+|..+++.++++.+..+...++||.|..
T Consensus 459 ---~-----~P--iv~~cndr~~p~sr~~~~~~~~l~f~kP~~~~i~~ri~si~~se~~ki~~~~l~~~s~~~~~DiR~~ 528 (871)
T KOG1968 459 ---S-----RP--LVCTCNDRNLPKSRALSRACSDLRFSKPSSELIRSRIMSICKSEGIKISDDVLEEISKLSGGDIRQI 528 (871)
T ss_pred ---C-----CC--EEEEECCCCCCCCCCHHHHCCEEEECCCCHHHHHHHHHHHHCCCCEECCCHHHHHHHHHCCCCHHHH
T ss_conf ---5-----77--6887337777665202232002340488577777666533024642417278899987506479999
Q ss_pred HHHHHHH
Q ss_conf 8777543
Q gi|254780552|r 223 GRLLRRV 229 (334)
Q Consensus 223 lnlLe~v 229 (334)
++.|+..
T Consensus 529 i~~lq~~ 535 (871)
T KOG1968 529 IMQLQFW 535 (871)
T ss_pred HHHHHHH
T ss_conf 9877644
No 179
>TIGR02880 cbbX_cfxQ CbbX protein; InterPro: IPR000470 Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. The Cfx genes in Alcaligenes eutrophus encode a number of Calvin cycle enzymes . The observed sizes of two of the gene products, CfxX and CfxY, are 35 kDa and 27 kDa respectively . No functions could be assigned to CfxX and CfxY. These proteins show a high degree of similarity to the Bacillus subtilis stage V sporulation protein K . ; GO: 0005524 ATP binding.
Probab=99.30 E-value=1.3e-11 Score=90.58 Aligned_cols=187 Identities=26% Similarity=0.269 Sum_probs=114.9
Q ss_pred HHHHCCHHHHHHHHHH-----HHHHHHH-----CCCCCCCEEEECCCCCCHHHHHHHHHHHCC-CCCCCCCCCCCCC-HH
Q ss_conf 7782397999999999-----9998661-----467767079973788557789999998618-9853125764433-46
Q gi|254780552|r 27 LEEFTGQVEACSNLKV-----FIEAAKA-----RAEALDHVLFVGPPGLGKTTLAQVVARELG-VNFRSTSGPVIAK-AG 94 (334)
Q Consensus 27 l~dviGQ~~~~~~l~~-----~i~a~~~-----~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~-~~~~~~s~~~~~~-~~ 94 (334)
=.|+||..-++.+++. +++..+. ...+--||-|.|.|||||||+|.-+|+-+- ..+.. .|..+.- -.
T Consensus 21 ~~~l~Gl~Pvk~r~~~~a~lllv~~~r~~~~l~~~~P~lhm~ftG~PGtGkttva~~m~~~l~~lGy~r-~G~~~~~trd 99 (284)
T TIGR02880 21 DRELIGLKPVKTRIREIAALLLVERLRQKLGLASAAPSLHMSFTGNPGTGKTTVALRMAQILHRLGYVR-KGHLVSVTRD 99 (284)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCC-CCCEEEEEHH
T ss_conf 676216415889999999999999999874221048832677516898724899999999998715400-3626785300
Q ss_pred HHHH------------HHHHHHCCCHHHHHHHHHCCH---------HHHHHHHHHHHCCCCCCC-CCCCCCCCEEECCCC
Q ss_conf 7666------------666410163788875761698---------999999998634751002-567876520004667
Q gi|254780552|r 95 DLAA------------LLTNLEDRDVLFIDEIHRLSI---------IVEEILYPAMEDFQLDLM-VGEGPSARSVKINLS 152 (334)
Q Consensus 95 dl~~------------~~~~~~~~~vlfiDEihrl~~---------~~q~~Ll~~mE~~~i~i~-~~~~~~a~~~~~~~~ 152 (334)
|+++ ++..+ .|.||||||.+-+.+ .+-++||..||+.+-+++ +-.|+..++-
T Consensus 100 dlvGqy~GhtaPktke~lk~a-~GGvlfideayyly~P~nerdyG~eaieillq~men~r~~lvvi~aGy~~rm~----- 173 (284)
T TIGR02880 100 DLVGQYIGHTAPKTKEVLKRA-MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMD----- 173 (284)
T ss_pred HHHHHHHCCCCCHHHHHHHHH-CCCEEEEECHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHH-----
T ss_conf 131122125772268999874-28736642203321776410223799999999872365537888717078888-----
Q ss_pred CCEEEECCCCCCCCCHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC--------CCCHHHHHH
Q ss_conf 400552045543355454420120673264547999998777654121011111112332022--------101567887
Q gi|254780552|r 153 RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRS--------RGTPRIAGR 224 (334)
Q Consensus 153 ~f~lI~ATt~~~~l~~~l~sR~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s--------~Gd~R~Aln 224 (334)
....-+|.+.||...+..|..|+.+|+..|.....+..+..++.++-..+..+- =.++|+.-|
T Consensus 174 ---------~f~~snPG~~sr~a~h~~fPdy~~~~l~~ia~~~l~~~~y~~~~~~~~~~~~y~~~r~~~P~f~nars~rn 244 (284)
T TIGR02880 174 ---------SFFESNPGLSSRVAHHVDFPDYSEEELLAIAELMLEEQQYRLSAEAEEALADYIALRRKQPFFANARSIRN 244 (284)
T ss_pred ---------HHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf ---------87511786246776431588877678999999988654121118899999999998631783146788999
Q ss_pred HHHHH
Q ss_conf 77543
Q gi|254780552|r 225 LLRRV 229 (334)
Q Consensus 225 lLe~v 229 (334)
.+.++
T Consensus 245 a~dr~ 249 (284)
T TIGR02880 245 ALDRA 249 (284)
T ss_pred HHHHH
T ss_conf 99889
No 180
>KOG0741 consensus
Probab=99.30 E-value=1.6e-12 Score=96.04 Aligned_cols=121 Identities=24% Similarity=0.460 Sum_probs=77.2
Q ss_pred CEEEECCCCCCHHHHHHHHHHHCCC-CCCCCCCCCCCC------HHHHHHHHHHHHC-------C---CHHHHHHHHHCC
Q ss_conf 0799737885577899999986189-853125764433------4676666664101-------6---378887576169
Q gi|254780552|r 56 HVLFVGPPGLGKTTLAQVVARELGV-NFRSTSGPVIAK------AGDLAALLTNLED-------R---DVLFIDEIHRLS 118 (334)
Q Consensus 56 h~Lf~GPpG~GKTtlA~iiA~~l~~-~~~~~s~~~~~~------~~dl~~~~~~~~~-------~---~vlfiDEihrl~ 118 (334)
-+|||||||||||.+||-|.+.||. +-+.+|||.+-+ -..++.++..+.+ . .|++.|||+..-
T Consensus 258 GiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAIC 337 (744)
T KOG0741 258 GILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAIC 337 (744)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHH
T ss_conf 57887799987018999987874579986347578898760630788999987579999843766772599963467999
Q ss_pred HH-------------HHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCCCCCCHHHHH--CCCCEEECCCC
Q ss_conf 89-------------9999999863475100256787652000466740055204554335545442--01206732645
Q gi|254780552|r 119 II-------------VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD--RFGIPIRLNFY 183 (334)
Q Consensus 119 ~~-------------~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~~~l~~~l~s--R~~~~~~~~~~ 183 (334)
|. .-+-||.-|+. . + .++...+||-|+|...|..+|+. |+.++.+...+
T Consensus 338 KqRGS~~g~TGVhD~VVNQLLsKmDG-V-e--------------qLNNILVIGMTNR~DlIDEALLRPGRlEVqmEIsLP 401 (744)
T KOG0741 338 KQRGSMAGSTGVHDTVVNQLLSKMDG-V-E--------------QLNNILVIGMTNRKDLIDEALLRPGRLEVQMEISLP 401 (744)
T ss_pred HHCCCCCCCCCCCHHHHHHHHHHCCC-H-H--------------HHHCEEEEECCCCHHHHHHHHCCCCCEEEEEEEECC
T ss_conf 74488789886318999999985322-8-7--------------661678994047366678875588716999998468
Q ss_pred CHHHHHHHH
Q ss_conf 479999987
Q gi|254780552|r 184 EIEDLKTIV 192 (334)
Q Consensus 184 ~~~el~~il 192 (334)
+..--.+|+
T Consensus 402 DE~gRlQIl 410 (744)
T KOG0741 402 DEKGRLQIL 410 (744)
T ss_pred CCCCCEEEE
T ss_conf 876727888
No 181
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.21 E-value=1.4e-10 Score=84.16 Aligned_cols=190 Identities=24% Similarity=0.327 Sum_probs=127.0
Q ss_pred CHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHC---CCCCCCCCCCCCCCH---HHH---
Q ss_conf 87782397999999999999866146776707997378855778999999861---898531257644334---676---
Q gi|254780552|r 26 TLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL---GVNFRSTSGPVIAKA---GDL--- 96 (334)
Q Consensus 26 ~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l---~~~~~~~s~~~~~~~---~dl--- 96 (334)
.+.++|||..+...+...++-.-. .-..+|+.|-.||||-.+||+|-+.. +.+|+.+|..++... +++
T Consensus 221 ~~~~iIG~S~am~~ll~~i~~VA~---Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPesLlESELFGH 297 (550)
T COG3604 221 EVGGIIGRSPAMRQLLKEIEVVAK---SDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPESLLESELFGH 297 (550)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHC---CCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHCC
T ss_conf 445623069999999999998726---89807984588853899999998737555798666312225378888887453
Q ss_pred -HHHHHHH----------HCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCCC-
Q ss_conf -6666641----------0163788875761698999999998634751002567876520004667400552045543-
Q gi|254780552|r 97 -AALLTNL----------EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVG- 164 (334)
Q Consensus 97 -~~~~~~~----------~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~~- 164 (334)
.+.|+.+ .+|.-||+|||-.++-..|.-||.++.++.+-=+ | ..++++++ +-+|+|||+.-
T Consensus 298 eKGAFTGA~~~r~GrFElAdGGTLFLDEIGelPL~lQaKLLRvLQegEieRv-G---~~r~ikVD---VRiIAATNRDL~ 370 (550)
T COG3604 298 EKGAFTGAINTRRGRFELADGGTLFLDEIGELPLALQAKLLRVLQEGEIERV-G---GDRTIKVD---VRVIAATNRDLE 370 (550)
T ss_pred CCCCCCCCHHCCCCCEEECCCCEEECHHHCCCCHHHHHHHHHHHHHCCEEEC-C---CCCEEEEE---EEEEECCCHHHH
T ss_conf 3223335101467635655797576022036787788999999863652534-7---99636777---899821353099
Q ss_pred --------------------CCCHHHHHCCCCEEECCCCCHHHH-HHHHHHHHHHCC---CHHHHHHHHHHHCCC-CCCH
Q ss_conf --------------------355454420120673264547999-998777654121---011111112332022-1015
Q gi|254780552|r 165 --------------------LLTNPLQDRFGIPIRLNFYEIEDL-KTIVQRGAKLTG---LAVTDEAACEIAMRS-RGTP 219 (334)
Q Consensus 165 --------------------~l~~~l~sR~~~~~~~~~~~~~el-~~il~~~~~~~~---i~~~~~al~~ia~~s-~Gd~ 219 (334)
...||||.|=. +..-| ...+++.+...| +.++++|++.|..+. -|+.
T Consensus 371 ~~V~~G~FRaDLYyRLsV~Pl~lPPLRER~~--------DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~L~~y~wPGNV 442 (550)
T COG3604 371 EMVRDGEFRADLYYRLSVFPLELPPLRERPE--------DIPLLAGYFLEKFRRRLGRAILSLSAEALELLSSYEWPGNV 442 (550)
T ss_pred HHHHCCCCHHHHHHCCCCCCCCCCCCCCCCC--------CHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCH
T ss_conf 9987495155453210200137898345886--------67999999999998863976403398999999739999719
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 67887775433345
Q gi|254780552|r 220 RIAGRLLRRVRDFA 233 (334)
Q Consensus 220 R~AlnlLe~v~d~a 233 (334)
|-.-|+++++.-.|
T Consensus 443 RELen~veRavlla 456 (550)
T COG3604 443 RELENVVERAVLLA 456 (550)
T ss_pred HHHHHHHHHHHHHC
T ss_conf 99998999999970
No 182
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=99.20 E-value=3.1e-10 Score=82.07 Aligned_cols=191 Identities=21% Similarity=0.225 Sum_probs=128.7
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHC--CCCCCCCCCCCCC----CHHHHHHHH------------HHHHCCCHHHHHHHH
Q ss_conf 6707997378855778999999861--8985312576443----346766666------------641016378887576
Q gi|254780552|r 54 LDHVLFVGPPGLGKTTLAQVVAREL--GVNFRSTSGPVIA----KAGDLAALL------------TNLEDRDVLFIDEIH 115 (334)
Q Consensus 54 ~~h~Lf~GPpG~GKTtlA~iiA~~l--~~~~~~~s~~~~~----~~~dl~~~~------------~~~~~~~vlfiDEih 115 (334)
+.-+++.|++|++|+|+++.++.-+ +.+|+.+--.+.+ +--|+...+ ..+ ++.||+|||++
T Consensus 25 lGGvlirg~~Gtakst~~r~l~~llp~~~p~~~lPl~~tedrl~G~lDi~~tL~~G~~v~~~GLLa~A-~~gvLyvdevn 103 (584)
T PRK13406 25 LGGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAERGLLAEA-DGGVLVLAMAE 103 (584)
T ss_pred CCCEEEECCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHCCCCCHHHHHHCCCEECCCCHHHCC-CCCEEEEECHH
T ss_conf 55189977999579999999997568999846569999741514712599999768985257533303-69989985147
Q ss_pred HCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCC----CCCCHHHHHCCCCEEECCCCCHHH----
Q ss_conf 169899999999863475100256787652000466740055204554----335545442012067326454799----
Q gi|254780552|r 116 RLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV----GLLTNPLQDRFGIPIRLNFYEIED---- 187 (334)
Q Consensus 116 rl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~----~~l~~~l~sR~~~~~~~~~~~~~e---- 187 (334)
++.....+.|+.++..|...+ --+|-+ .+ ....|+||+. .+. ..+++.|++||.+...++-....+
T Consensus 104 ll~d~lv~~Ll~a~~~G~~~v-EReGiS---~~-~parf~LIa~-deg~e~de~~~~~l~dRla~~vd~~~~~~~~~~~~ 177 (584)
T PRK13406 104 RLEPGTAARLAAALDAGEVAI-ERDGLA---LR-MPARFGLVAL-DEGAEEDERAPAALADRLAFHLDLDGLALRDTREF 177 (584)
T ss_pred HCCHHHHHHHHHHHHCCCCCC-CCCCCC---CC-CCCEEEEEEE-CCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 378889999999985487400-258766---35-6650589994-67887643110788876507068167666640111
Q ss_pred ---HHHHHHHHHHHCCCHHHHHHHHHHHCCCC----CCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf ---99987776541210111111123320221----01567887775433345541588642778787654
Q gi|254780552|r 188 ---LKTIVQRGAKLTGLAVTDEAACEIAMRSR----GTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251 (334)
Q Consensus 188 ---l~~il~~~~~~~~i~~~~~al~~ia~~s~----Gd~R~AlnlLe~v~d~a~~~~~~~i~~~~~~~~l~ 251 (334)
-..|..-....-.|.++++.+..|+..+- -..|.-+-+++.++..|...|...++.++++.+..
T Consensus 178 ~~~~~~i~~Ar~~L~~V~i~d~~~~~l~~~a~~~gv~g~Ra~i~~~raArA~AAl~Gr~~V~~~Dl~~Aa~ 248 (584)
T PRK13406 178 PIDADDIAAARARLAAVRVPPEAIEALCAAAAALGIASLRAPLLALRAARAAAALAGRTAVEEADIALAAR 248 (584)
T ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf 12368999999867866669999999999999839986209999999999999974999788999999999
No 183
>pfam00158 Sigma54_activat Sigma-54 interaction domain.
Probab=99.20 E-value=5.6e-11 Score=86.63 Aligned_cols=122 Identities=23% Similarity=0.339 Sum_probs=78.6
Q ss_pred HCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHC---CCCCCCCCCCCCCCHHHH----------
Q ss_conf 2397999999999999866146776707997378855778999999861---898531257644334676----------
Q gi|254780552|r 30 FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL---GVNFRSTSGPVIAKAGDL---------- 96 (334)
Q Consensus 30 viGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l---~~~~~~~s~~~~~~~~dl---------- 96 (334)
+||+......+...+...-.. -.++|+.|++||||+++|+.|-+.. +.+|+.++...+.. ..+
T Consensus 1 lIG~S~~m~~l~~~i~~~a~~---~~pVLI~GE~GtGK~~lAr~IH~~S~r~~~pfi~vnc~~~~~-~~le~~LFG~~~g 76 (168)
T pfam00158 1 LIGESPAMQEVLELAKRVAPT---DATVLITGESGTGKELFARAIHQLSPRADGPFVAVNCAAIPE-ELLESELFGHEKG 76 (168)
T ss_pred CEECCHHHHHHHHHHHHHHCC---CCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCH-HHHHHHHCCCCCC
T ss_conf 973899999999999999588---998899899988889999999985243568831256789987-7999987587667
Q ss_pred ---------HHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCC
Q ss_conf ---------6666641016378887576169899999999863475100256787652000466740055204554
Q gi|254780552|r 97 ---------AALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163 (334)
Q Consensus 97 ---------~~~~~~~~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~ 163 (334)
.+.+..+ .+..||+|||+.++...|..|+.++|++.+.-+ +. .+.++ .++-+|.+|+.+
T Consensus 77 ~f~ga~~~~~G~le~A-~gGTL~LdeI~~L~~~~Q~~Ll~~L~~~~~~~~-g~---~~~~~---~~vRiIast~~~ 144 (168)
T pfam00158 77 AFTGAVSDRKGLFELA-DGGTLFLDEIGELPLELQAKLLRVLQEGEFERV-GG---TKPIK---VDVRIIAATNRD 144 (168)
T ss_pred CCCCCCCCCCCCEEEC-CCCEEECCCHHHCCHHHHHHHHHHHHCCEEEEC-CC---CCEEE---EEEEEEEECCCC
T ss_conf 6689875789964226-998788024413999999999999857969977-99---84588---854999965988
No 184
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR; InterPro: IPR012704 At least five distinct pathways exist for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR which is, in most cases, divergently transcribed from the operon that encodes the genes involved in the methylcitric acid cycle of propionate catabolism. This protein is required for the expression of the proteins involved in this pathway . 2-methylcitric acid, an intermediate in this pathway, has been proposed to be a co-activator of PrpR .; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0019629 propionate catabolic process 2-methylcitrate cycle, 0005737 cytoplasm.
Probab=99.18 E-value=5.1e-10 Score=80.78 Aligned_cols=268 Identities=22% Similarity=0.295 Sum_probs=161.7
Q ss_pred HCCCC-CHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHC-----------CCCCCCCCCC
Q ss_conf 50789-87782397999999999999866146776707997378855778999999861-----------8985312576
Q gi|254780552|r 21 LLRPR-TLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-----------GVNFRSTSGP 88 (334)
Q Consensus 21 ~lRP~-~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l-----------~~~~~~~s~~ 88 (334)
.+|-+ .++|++|++.....++..|.-.- + ....+|..|-.||||=..|+.|=+|. ..+|+.+|+.
T Consensus 311 ~lrtR~~~~dl~G~s~~Me~VR~~v~lYA-r--s~atVLi~GE~GTGKElvAq~~H~EY~~R~~~~~~r~~~pFVAiNCG 387 (658)
T TIGR02329 311 QLRTRYRLDDLLGESAAMEQVRALVRLYA-R--SAATVLIEGESGTGKELVAQAIHREYALRYDQLSGRRDRPFVAINCG 387 (658)
T ss_pred HHHCCCCHHHHCCCCCCHHHHHHHHHHHC-C--CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECC
T ss_conf 43203454765389821389999998526-8--86506751477722899999975999874666501337884687474
Q ss_pred CCCCH---HHHH----HHHHHHH-----------CCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECC
Q ss_conf 44334---6766----6666410-----------1637888757616989999999986347510025678765200046
Q gi|254780552|r 89 VIAKA---GDLA----ALLTNLE-----------DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKIN 150 (334)
Q Consensus 89 ~~~~~---~dl~----~~~~~~~-----------~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~ 150 (334)
++... .++- +.|+.+. ++.-||+|||-+|+=.-|.-||.++|+..|.=+=+..|- .+
T Consensus 388 Ai~EsLLEaELFGYeeGAFTGaRrGG~~GL~E~Ah~GTLFLDEIGEmPLPLQtRLLRVLeEreV~RvG~~~P~----~V- 462 (658)
T TIGR02329 388 AIAESLLEAELFGYEEGAFTGARRGGRTGLIEAAHRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTEPV----PV- 462 (658)
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHCCCCEEEHHHCCCCCHHHHHHHHHHHCCCEEECCCCCCC----EE-
T ss_conf 6568888776426766650167767761222200579510010035786146777776512214761787540----24-
Q ss_pred CCCCEEEECCCCC---------------C-----CC-CHHHHHCCCCEEECCCCCHHHHHHHHHHHH-----HHCCCHHH
Q ss_conf 6740055204554---------------3-----35-545442012067326454799999877765-----41210111
Q gi|254780552|r 151 LSRFTLIAATTRV---------------G-----LL-TNPLQDRFGIPIRLNFYEIEDLKTIVQRGA-----KLTGLAVT 204 (334)
Q Consensus 151 ~~~f~lI~ATt~~---------------~-----~l-~~~l~sR~~~~~~~~~~~~~el~~il~~~~-----~~~~i~~~ 204 (334)
++-+|+||-.+ + .| .||||+|-.= .-++ ..+.+++.. ..+.++++
T Consensus 463 --DvRvvaAth~~L~~~v~~GrFR~DLfYRL~~Lri~lPpLR~R~~D---i~~L----a~~~l~~~~rrePr~~l~~P~s 533 (658)
T TIGR02329 463 --DVRVVAATHCALETAVQQGRFRRDLFYRLSILRIDLPPLRERPDD---ILPL----AAEYLKQALRREPRAALALPLS 533 (658)
T ss_pred --EEEEEECCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCHHH---HHHH----HHHHHHHHHCCCCHHHHCCCCC
T ss_conf --443433122225879857882422899999985147876686445---9999----9999987532251576518863
Q ss_pred HHHHHHHHCCC--------CCCHHHHHHHHHHHHHHHH---HHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 11112332022--------1015678877754333455---415886427787876542100000046776889999997
Q gi|254780552|r 205 DEAACEIAMRS--------RGTPRIAGRLLRRVRDFAE---VAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIAR 273 (334)
Q Consensus 205 ~~al~~ia~~s--------~Gd~R~AlnlLe~v~d~a~---~~~~~~i~~~~~~~~l~~~~id~~Gl~~~d~~~L~~l~~ 273 (334)
+.+...|+... -|+.|-.=|+.|++.-+-. +...+.||.+..+-.... -..+|+.-..
T Consensus 534 ~~~~q~L~~~~~~L~~y~WpGNvRELrnl~ERl~~~l~dtda~~~~~~t~~~l~~~~Pe-----------r~s~le~a~~ 602 (658)
T TIGR02329 534 EAALQELAAVEDALQRYAWPGNVRELRNLVERLALYLSDTDAEPEGALTPDLLEALAPE-----------RQSILELAEA 602 (658)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCC-----------HHHHHHHHHH
T ss_conf 89998874378898616899843788779999988864035563311008999985875-----------2479999975
Q ss_pred HHCCCCCHHHHHHHHHCCCCCCCHHHHHHH-H----------HHHHHCCCCHHHHHH
Q ss_conf 518662069999998287456746789999-9----------983430587189999
Q gi|254780552|r 274 NFGGGPVGIETISAGLSEPRDAIEDLIEPY-M----------IQQGFIQRTPRGRLL 319 (334)
Q Consensus 274 ~~~~g~~~~~~isA~~ks~RgS~~daa~~y-L----------~r~g~~~~~prgRrL 319 (334)
+ ++.|||.-||.-=+.|..++-....- | ++.+-|.+|.-||||
T Consensus 603 s---~~~Gyd~T~a~~~~~rs~v~a~~~~~aL~~~~G~~~a~a~~LGiSrTTLWRrL 656 (658)
T TIGR02329 603 S---TKAGYDKTSADSLRERSRVEALAVRAALERFQGDRAAAAKALGISRTTLWRRL 656 (658)
T ss_pred H---CCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHH
T ss_conf 2---24677667747773420433576899998727896899854276424577761
No 185
>KOG0744 consensus
Probab=99.14 E-value=1.1e-10 Score=84.96 Aligned_cols=122 Identities=23% Similarity=0.408 Sum_probs=76.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCC---------CCCCCCCCC-C----CHHHH-HHHHHHHH-----CCCH--HHHHHH
Q ss_conf 7997378855778999999861898---------531257644-3----34676-66666410-----1637--888757
Q gi|254780552|r 57 VLFVGPPGLGKTTLAQVVARELGVN---------FRSTSGPVI-A----KAGDL-AALLTNLE-----DRDV--LFIDEI 114 (334)
Q Consensus 57 ~Lf~GPpG~GKTtlA~iiA~~l~~~---------~~~~s~~~~-~----~~~dl-~~~~~~~~-----~~~v--lfiDEi 114 (334)
+|++|||||||||+.+.+|+.+... ++++|...+ + ..+-+ ..++..+. ++.. +.|||+
T Consensus 180 iLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEV 259 (423)
T KOG0744 180 ILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEV 259 (423)
T ss_pred EEEECCCCCCHHHHHHHHHHHHEEEECCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHH
T ss_conf 99857999882279999987514652376444069997046788988712113899999999999717896899980787
Q ss_pred HHCCHHH---------------HHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCC-CCCCHHHHHCCCCEE
Q ss_conf 6169899---------------999999863475100256787652000466740055204554-335545442012067
Q gi|254780552|r 115 HRLSIIV---------------EEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV-GLLTNPLQDRFGIPI 178 (334)
Q Consensus 115 hrl~~~~---------------q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~-~~l~~~l~sR~~~~~ 178 (334)
..+.-.. -++||.-|+.- +--|=.+|.||... .+|..++-||-.+++
T Consensus 260 ESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrl-----------------K~~~NvliL~TSNl~~siD~AfVDRADi~~ 322 (423)
T KOG0744 260 ESLAAARTSASSRNEPSDAIRVVNALLTQLDRL-----------------KRYPNVLILATSNLTDSIDVAFVDRADIVF 322 (423)
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH-----------------CCCCCEEEEECCCHHHHHHHHHHHHHHHEE
T ss_conf 888999875413799821899999999989986-----------------047977999626267777888611754211
Q ss_pred ECCCCCHHHHHHHHHHH
Q ss_conf 32645479999987776
Q gi|254780552|r 179 RLNFYEIEDLKTIVQRG 195 (334)
Q Consensus 179 ~~~~~~~~el~~il~~~ 195 (334)
...+++.+.+.+|++..
T Consensus 323 yVG~Pt~~ai~~Ilksc 339 (423)
T KOG0744 323 YVGPPTAEAIYEILKSC 339 (423)
T ss_pred ECCCCCHHHHHHHHHHH
T ss_conf 03896399999999999
No 186
>KOG0735 consensus
Probab=99.12 E-value=3e-10 Score=82.22 Aligned_cols=219 Identities=16% Similarity=0.104 Sum_probs=128.2
Q ss_pred CCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCC----CCCCCCCCCC-----CH
Q ss_conf 78987782397999999999999866146776707997378855778999999861898----5312576443-----34
Q gi|254780552|r 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN----FRSTSGPVIA-----KA 93 (334)
Q Consensus 23 RP~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~----~~~~s~~~~~-----~~ 93 (334)
+|..=.|+|--..+++..-...-.- .-..+|+|++||+|+|||.||+.+++++..+ +...++..+. +.
T Consensus 403 ~~~~e~d~i~~~s~kke~~n~~~sp---v~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~i 479 (952)
T KOG0735 403 MSPFEHDFIQVPSYKKENANQELSP---VFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKI 479 (952)
T ss_pred CCCCCCCEEECCHHHHHHHHHHCCC---CCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEECHHCCCHHHHHH
T ss_conf 4767786244304555443230454---3346618986799877769999999875156506999975221042048999
Q ss_pred -HHHHHHHHHH--HCCCHHHHHHHHHCCH-----HHHHHHHHHHHCCCC-CCCCCCCCCCCEEECCCCCCEEEECCCCCC
Q ss_conf -6766666641--0163788875761698-----999999998634751-002567876520004667400552045543
Q gi|254780552|r 94 -GDLAALLTNL--EDRDVLFIDEIHRLSI-----IVEEILYPAMEDFQL-DLMVGEGPSARSVKINLSRFTLIAATTRVG 164 (334)
Q Consensus 94 -~dl~~~~~~~--~~~~vlfiDEihrl~~-----~~q~~Ll~~mE~~~i-~i~~~~~~~a~~~~~~~~~f~lI~ATt~~~ 164 (334)
+++..+++.. ....|+.+|..|.+-. ..|+....-+....+ +++..-+...+ ...||+...+..
T Consensus 480 Qk~l~~vfse~~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~-------~ia~Iat~qe~q 552 (952)
T KOG0735 480 QKFLNNVFSEALWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNR-------KIAVIATGQELQ 552 (952)
T ss_pred HHHHHHHHHHHHHHCCCEEEECCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC-------EEEEEEECHHHH
T ss_conf 9999999999886378089970503540568444773028999999999999999870685-------799998514342
Q ss_pred CCCHHHHH--CCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHHHHH----HC
Q ss_conf 35545442--012067326454799999877765412101111111233202210-156788777543334554----15
Q gi|254780552|r 165 LLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRG-TPRIAGRLLRRVRDFAEV----AH 237 (334)
Q Consensus 165 ~l~~~l~s--R~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~G-d~R~AlnlLe~v~d~a~~----~~ 237 (334)
.+++-|-| +|.++.++..+...+-.+|++..+++....+..+-++.++....| ++++..-+.+++.-.|.. ++
T Consensus 553 tl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris~~ 632 (952)
T KOG0735 553 TLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERISNG 632 (952)
T ss_pred HCCHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 03853347631478881589235679999999997553454567899888760784404479999999999998875167
Q ss_pred CCCCCHHHHHHHHH
Q ss_conf 88642778787654
Q gi|254780552|r 238 AKTITREIADAALL 251 (334)
Q Consensus 238 ~~~i~~~~~~~~l~ 251 (334)
.+.++.+..++++.
T Consensus 633 ~klltke~f~ksL~ 646 (952)
T KOG0735 633 PKLLTKELFEKSLK 646 (952)
T ss_pred CCCCHHHHHHHHHH
T ss_conf 63101889999987
No 187
>pfam05621 TniB Bacterial TniB protein. This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein which is involved in Tn5053 mercury resistance transposition.
Probab=99.12 E-value=1.8e-09 Score=77.47 Aligned_cols=199 Identities=20% Similarity=0.230 Sum_probs=115.5
Q ss_pred HCCHHHHHHH---HHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCCC---------CCCCCCCCCCCCHHHH-
Q ss_conf 2397999999---99999986614677670799737885577899999986189---------8531257644334676-
Q gi|254780552|r 30 FTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV---------NFRSTSGPVIAKAGDL- 96 (334)
Q Consensus 30 viGQ~~~~~~---l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~~---------~~~~~s~~~~~~~~dl- 96 (334)
.||-..+... +..++.. .+..-+|++|++|++|.|||++++-.++.-.. +...+.+|.-...+++
T Consensus 36 WIgY~~A~~~L~~Le~Ll~~--P~~~Rmp~lLlvGdsnnGKT~Iv~rF~~~hp~~~d~~~~~~PVl~vq~P~~p~~~~lY 113 (302)
T pfam05621 36 WIGYPRAVEALNRLEALYAW--PNKQRMPNLLLVGPTNNGKSMIVEKFRRAHPAGSDADQEHIPVLVVQMPSEPSVIRFY 113 (302)
T ss_pred CCCCHHHHHHHHHHHHHHHC--CCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCHHHHH
T ss_conf 32778999999999999846--8646887558870798878999999999679987866670218999769998868999
Q ss_pred H------------------------HHHHHHHCCCHHHHHHHHHC---CHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEC
Q ss_conf 6------------------------66664101637888757616---98999999998634751002567876520004
Q gi|254780552|r 97 A------------------------ALLTNLEDRDVLFIDEIHRL---SIIVEEILYPAMEDFQLDLMVGEGPSARSVKI 149 (334)
Q Consensus 97 ~------------------------~~~~~~~~~~vlfiDEihrl---~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~ 149 (334)
. ..+..++. .+|+|||+|.+ +...|..++-++-. ...++
T Consensus 114 ~~IL~~l~aP~~~~~~~~~~~~~~~~ll~~~~v-rmLIIDEiHnlL~Gs~~~qr~~ln~LK~-------------L~Nel 179 (302)
T pfam05621 114 VALLAAMGAPLRPRPRLPEMEQLALALLRKVGV-RMLVIDELHNVLAGNSVNRREFLNLLRF-------------LGNEL 179 (302)
T ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCC-CEEEEECHHHHCCCCHHHHHHHHHHHHH-------------HHHCC
T ss_conf 999998378778887789999999999997498-7899854365604868899999999999-------------86365
Q ss_pred CCCCCEEEECCCC-CCC-C--CHHHHHCCCCEEECCCCCHH-HHHHHHHHHHHHCC----CH-HHHHHHHHHHCCCCCCH
Q ss_conf 6674005520455-433-5--54544201206732645479-99998777654121----01-11111123320221015
Q gi|254780552|r 150 NLSRFTLIAATTR-VGL-L--TNPLQDRFGIPIRLNFYEIE-DLKTIVQRGAKLTG----LA-VTDEAACEIAMRSRGTP 219 (334)
Q Consensus 150 ~~~~f~lI~ATt~-~~~-l--~~~l~sR~~~~~~~~~~~~~-el~~il~~~~~~~~----i~-~~~~al~~ia~~s~Gd~ 219 (334)
.+| +|++.|. ... + .+-+.|||.- +.+..+..+ +....+....+.+. -. .+++....|-..|+|..
T Consensus 180 ~Ip---iV~vGt~eA~~ai~tD~QlasRF~~-~~Lp~W~~d~ef~~LL~sfe~~LPL~~~S~L~~~~~a~~I~~~SeG~i 255 (302)
T pfam05621 180 RIP---LVGVGTRDAYLAIRSDDQLENRFEP-MLLPPWEANDDCCSLLASFAASLPLRRPSPIATLDMARYLLTRSEGTI 255 (302)
T ss_pred CCC---EEEECCHHHHHHHHCCHHHHHHCCC-CCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCH
T ss_conf 878---6995319999997068888850586-116888898089999999998688877768888999999999859928
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 67887775433345541588642778787
Q gi|254780552|r 220 RIAGRLLRRVRDFAEVAHAKTITREIADA 248 (334)
Q Consensus 220 R~AlnlLe~v~d~a~~~~~~~i~~~~~~~ 248 (334)
...-++|..+.-.|...|.+.||.+.+++
T Consensus 256 Gei~~Ll~~aA~~AI~sG~E~It~~~l~~ 284 (302)
T pfam05621 256 GELAHLLMAAAIAAVESGEEAINHRTLSM 284 (302)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHH
T ss_conf 79999999999999847871008999966
No 188
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.08 E-value=2.9e-09 Score=76.12 Aligned_cols=183 Identities=26% Similarity=0.325 Sum_probs=111.5
Q ss_pred CCCHHHHCCHHHHHHHHH-HHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCC---CCCCCCCCCCCHHHHHHH
Q ss_conf 898778239799999999-9999866146776707997378855778999999861898---531257644334676666
Q gi|254780552|r 24 PRTLEEFTGQVEACSNLK-VFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN---FRSTSGPVIAKAGDLAAL 99 (334)
Q Consensus 24 P~~l~dviGQ~~~~~~l~-~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~---~~~~s~~~~~~~~dl~~~ 99 (334)
|-.+.+++|-++.++.|- +..+ ...|.+--|+|+||..||||.|+.+++-++++.. +++++-..+..--++...
T Consensus 56 ~i~L~~l~Gvd~qk~~L~~NT~~--F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~~Lp~l~~~ 133 (287)
T COG2607 56 PIDLADLVGVDRQKEALVRNTEQ--FAEGLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLATLPDLVEL 133 (287)
T ss_pred CCCHHHHHCCHHHHHHHHHHHHH--HHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHH
T ss_conf 76789872731899999998999--9728865236776377777479999999998741770799768888657999999
Q ss_pred HHHHHCCCHHHHHHHHHCCH--HHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECC-CCCCC-----------
Q ss_conf 66410163788875761698--99999999863475100256787652000466740055204-55433-----------
Q gi|254780552|r 100 LTNLEDRDVLFIDEIHRLSI--IVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAAT-TRVGL----------- 165 (334)
Q Consensus 100 ~~~~~~~~vlfiDEihrl~~--~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~AT-t~~~~----------- 165 (334)
+....++-|+|+|.. .|-. ..--+|=++||.+ +. +-|. .+ ++-|| |+-+.
T Consensus 134 Lr~~~~kFIlFcDDL-SFe~gd~~yK~LKs~LeG~-ve----~rP~---------NV-l~YATSNRRHLl~e~~~dn~~~ 197 (287)
T COG2607 134 LRARPEKFILFCDDL-SFEEGDDAYKALKSALEGG-VE----GRPA---------NV-LFYATSNRRHLLPEDMKDNEGS 197 (287)
T ss_pred HHCCCCEEEEEECCC-CCCCCCHHHHHHHHHHCCC-CC----CCCC---------EE-EEEEECCCCCCCCHHHHHCCCC
T ss_conf 961886089995677-7777813899999985388-55----6887---------07-9997158753362766427784
Q ss_pred ---CCH--------HHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHH-----CCCCCCHHHHHH
Q ss_conf ---554--------54420120673264547999998777654121011111112332-----022101567887
Q gi|254780552|r 166 ---LTN--------PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIA-----MRSRGTPRIAGR 224 (334)
Q Consensus 166 ---l~~--------~l~sR~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia-----~~s~Gd~R~Aln 224 (334)
|.+ .|-|||++-+-|.+.+.++-.+|+...++..++.++++.+..=| .+.+-+.|.|-.
T Consensus 198 ~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~eAl~WAt~rg~RSGR~A~Q 272 (287)
T COG2607 198 TGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHAEALQWATTRGGRSGRVAWQ 272 (287)
T ss_pred CCCCCHHHHHHHHHCHHHHCCEEECCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHH
T ss_conf 023580677877625464234045036878899999999999985999887899999999998618984275999
No 189
>KOG0736 consensus
Probab=99.08 E-value=7.6e-10 Score=79.71 Aligned_cols=238 Identities=23% Similarity=0.249 Sum_probs=126.2
Q ss_pred CHHHHCCHHHHHHHHHHHHHHHHHCC----CCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC--CH----HH
Q ss_conf 87782397999999999999866146----7767079973788557789999998618985312576443--34----67
Q gi|254780552|r 26 TLEEFTGQVEACSNLKVFIEAAKARA----EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA--KA----GD 95 (334)
Q Consensus 26 ~l~dviGQ~~~~~~l~~~i~a~~~~~----~~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~~~~~--~~----~d 95 (334)
++-..-+++..+..+...+...+.-+ ...+.+|++|||||||||+.+.+|+++|.++..+++..+- .+ .-
T Consensus 399 n~~~~~~~~~~~~~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etk 478 (953)
T KOG0736 399 NSLSPPGLEAKVLELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETK 478 (953)
T ss_pred CCCCCCCCHHHHHHHHHHHCCCCCCCHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHCCCCHHHHH
T ss_conf 15887660279999999848655853001335537998679998757999999998387257013898864363313789
Q ss_pred HHHHHHHHH--CCCHHHHHHHHHCCHHHH---HH-HHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCCCCCCHH
Q ss_conf 666666410--163788875761698999---99-999863475100256787652000466740055204554335545
Q gi|254780552|r 96 LAALLTNLE--DRDVLFIDEIHRLSIIVE---EI-LYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNP 169 (334)
Q Consensus 96 l~~~~~~~~--~~~vlfiDEihrl~~~~q---~~-Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~~~l~~~ 169 (334)
+...+.+++ ...|||+--.+-|..++. ++ ++.+|+. . +. ....+...++.++|++|+....+++-
T Consensus 479 l~~~f~~a~~~~pavifl~~~dvl~id~dgged~rl~~~i~~-~----ls----~e~~~~~~~~~ivv~t~~s~~~lp~~ 549 (953)
T KOG0736 479 LQAIFSRARRCSPAVLFLRNLDVLGIDQDGGEDARLLKVIRH-L----LS----NEDFKFSCPPVIVVATTSSIEDLPAD 549 (953)
T ss_pred HHHHHHHHHHCCCEEEEEECCCEEEECCCCCHHHHHHHHHHH-H----HH----CCCCCCCCCCEEEEEECCCCCCCCHH
T ss_conf 999999875268628987224245533777442779999999-9----72----02356779965999962530239878
Q ss_pred HHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC----CCCHH--------HHHHHHHHHH-------
Q ss_conf 4420120673264547999998777654121011111112332022----10156--------7887775433-------
Q gi|254780552|r 170 LQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRS----RGTPR--------IAGRLLRRVR------- 230 (334)
Q Consensus 170 l~sR~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s----~Gd~R--------~AlnlLe~v~------- 230 (334)
+++-|...+++..++.++-.+|++-....+.++-+ .-++.+|+.. .||.- .+....+...
T Consensus 550 i~~~f~~ei~~~~lse~qRl~iLq~y~~~~~~n~~-v~~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~ 628 (953)
T KOG0736 550 IQSLFLHEIEVPALSEEQRLEILQWYLNHLPLNQD-VNLKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQE 628 (953)
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHH-HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCCHH
T ss_conf 98752652137788878899999999830652357-78789998658987777997714751888999975201443111
Q ss_pred --HHHHHHCCCCCCHHHHHHHHHHHH-----------C------CCCHHHHHHHHHHHHHHH
Q ss_conf --345541588642778787654210-----------0------000046776889999997
Q gi|254780552|r 231 --DFAEVAHAKTITREIADAALLRLA-----------I------DKMGFDQLDLRYLTMIAR 273 (334)
Q Consensus 231 --d~a~~~~~~~i~~~~~~~~l~~~~-----------i------d~~Gl~~~d~~~L~~l~~ 273 (334)
+-+.......++.++..+++..+. | |=.|++.....+|.++.-
T Consensus 629 ~~~~~~~~~~~~l~~edf~kals~~~~~fs~aiGAPKIPnV~WdDVGGLeevK~eIldTIql 690 (953)
T KOG0736 629 EDEGELCAAGFLLTEEDFDKALSRLQKEFSDAIGAPKIPNVSWDDVGGLEEVKTEILDTIQL 690 (953)
T ss_pred CCCCCCCCCCCEECHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCCHHHHHHHHHHHHCC
T ss_conf 02454012464101988888988988865553079888964600155789999999987547
No 190
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=99.08 E-value=1.2e-08 Score=72.45 Aligned_cols=167 Identities=23% Similarity=0.335 Sum_probs=103.5
Q ss_pred CEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHH----------------HHHHHHCCCHHHHHHHHHCCH
Q ss_conf 0799737885577899999986189853125764433467666----------------666410163788875761698
Q gi|254780552|r 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAA----------------LLTNLEDRDVLFIDEIHRLSI 119 (334)
Q Consensus 56 h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~~~~~~~~dl~~----------------~~~~~~~~~vlfiDEihrl~~ 119 (334)
++|+-||.-+||||...-+|+++|-.|+.+|...-+...+..+ ++..+.+|..+.+||.+-.+.
T Consensus 890 P~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~GyWIVLDELNLApT 969 (4600)
T COG5271 890 PLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRRGYWIVLDELNLAPT 969 (4600)
T ss_pred CEEEECCCCCCCCHHHHHHHHHHCCCEEEECCCCCCHHHHHHHCEEECCCCCEEEEHHHHHHHHHCCCEEEEECCCCCCH
T ss_conf 67986688877004999999873760798658554349987430350689856540107899885686799610246707
Q ss_pred HHHHHHHHHHHCC-CCCCCCCCCCCCCEEECCCCCCEEEECCCCCCC-------CCHHHHHCCCCEEECCCCCHHHHHHH
Q ss_conf 9999999986347-510025678765200046674005520455433-------55454420120673264547999998
Q gi|254780552|r 120 IVEEILYPAMEDF-QLDLMVGEGPSARSVKINLSRFTLIAATTRVGL-------LTNPLQDRFGIPIRLNFYEIEDLKTI 191 (334)
Q Consensus 120 ~~q~~Ll~~mE~~-~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~~~-------l~~~l~sR~~~~~~~~~~~~~el~~i 191 (334)
.+.++|=..++|- .+.| |....+-.+-|.| +++||..||- ++.|+|.|| +-.+|.-...+||..|
T Consensus 970 DVLEaLNRLLDDNRelfI-----PETqevV~PHp~F-~lFATQNppg~YgGRK~LSrAFRNRF-lE~hFddipedEle~I 1042 (4600)
T COG5271 970 DVLEALNRLLDDNRELFI-----PETQEVVVPHPNF-RLFATQNPPGGYGGRKGLSRAFRNRF-LEMHFDDIPEDELEEI 1042 (4600)
T ss_pred HHHHHHHHHHCCCCCEEC-----CCCCEEECCCCCE-EEEEECCCCCCCCCHHHHHHHHHHHH-HHHHCCCCCHHHHHHH
T ss_conf 799999986446640206-----7755243358873-68861389865341277779998656-7642135857899999
Q ss_pred HHHHHHHCCCHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHHHH
Q ss_conf 77765412101111111233202210--15678877754333455
Q gi|254780552|r 192 VQRGAKLTGLAVTDEAACEIAMRSRG--TPRIAGRLLRRVRDFAE 234 (334)
Q Consensus 192 l~~~~~~~~i~~~~~al~~ia~~s~G--d~R~AlnlLe~v~d~a~ 234 (334)
+...| ++.++-...|...-+| .-|++.++.|+-..||.
T Consensus 1043 Lh~rc-----~iapSyakKiVeVyr~Ls~rRs~~rifeqknsfaT 1082 (4600)
T COG5271 1043 LHGRC-----EIAPSYAKKIVEVYRGLSSRRSINRIFEQKNSFAT 1082 (4600)
T ss_pred HHCCC-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 96367-----66879999999999886565568888775202788
No 191
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.07 E-value=1.2e-10 Score=84.57 Aligned_cols=115 Identities=36% Similarity=0.420 Sum_probs=63.0
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHCCCC---CCCCCCCCC--------------------CCHHHHHHHHHHHHCC--CHH
Q ss_conf 707997378855778999999861898---531257644--------------------3346766666641016--378
Q gi|254780552|r 55 DHVLFVGPPGLGKTTLAQVVARELGVN---FRSTSGPVI--------------------AKAGDLAALLTNLEDR--DVL 109 (334)
Q Consensus 55 ~h~Lf~GPpG~GKTtlA~iiA~~l~~~---~~~~s~~~~--------------------~~~~dl~~~~~~~~~~--~vl 109 (334)
.+++++|||||||||+++.+|+.+... +..+++... .........+..++.. .|+
T Consensus 3 ~~ill~G~~GsGKTtl~~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi 82 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVL 82 (148)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEE
T ss_conf 78999999970299999999987266899689987599898889876530001122105199999999999984499899
Q ss_pred HHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCC-CCCCCHHHHHCCCCEEE
Q ss_conf 88757616989999999986347510025678765200046674005520455-43355454420120673
Q gi|254780552|r 110 FIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTR-VGLLTNPLQDRFGIPIR 179 (334)
Q Consensus 110 fiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~-~~~l~~~l~sR~~~~~~ 179 (334)
|+||++++....+..+........... .........+|++++. ....+..++.|+...+.
T Consensus 83 iiDei~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~vi~~~n~~~~~~~~~~~~~~~~~~~ 143 (148)
T smart00382 83 ILDEITSLLDAEQEALLLLLEELRLLL----------LLKSEKNLTVILTTNDEKDLGPALLRRRFDRRIV 143 (148)
T ss_pred EEECCHHHCCCCCHHHHHHHHHHHHHC----------CCCCCCCEEEEEEECCCCCCCHHHHCCCCCEEEE
T ss_conf 982750214762079999999999851----------7657899899995699522498770744787999
No 192
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=99.04 E-value=1.5e-09 Score=78.00 Aligned_cols=219 Identities=22% Similarity=0.262 Sum_probs=123.3
Q ss_pred HHHHCCHHHHHHHHHHHHHHHHH---------CCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCC-----CCCCC
Q ss_conf 77823979999999999998661---------46776707997378855778999999861898531257-----64433
Q gi|254780552|r 27 LEEFTGQVEACSNLKVFIEAAKA---------RAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG-----PVIAK 92 (334)
Q Consensus 27 l~dviGQ~~~~~~l~~~i~a~~~---------~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~-----~~~~~ 92 (334)
.-.+.|.+.+|+.+-..+-.+-. ||. -|+|+.|=|||||+.+-+-+++..-... .++| ..++-
T Consensus 285 aPsIyG~e~VKkAilLqLfgGv~k~~~~g~~iRGD--InILLvGDPgtaKSqlLk~v~~~aPr~v-ytsgkgss~~GLTA 361 (682)
T COG1241 285 APSIYGHEDVKKAILLQLFGGVKKNLPDGTRIRGD--IHILLVGDPGTAKSQLLKYVAKLAPRGV-YTSGKGSSAAGLTA 361 (682)
T ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCC--EEEEECCCCCHHHHHHHHHHHHHCCCEE-EECCCCCCCCCCEE
T ss_conf 15103819999999999608976647998620242--2699817982519999999886488407-97264125457306
Q ss_pred --HHHH--------HHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCC
Q ss_conf --4676--------666664101637888757616989999999986347510025678765200046674005520455
Q gi|254780552|r 93 --AGDL--------AALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTR 162 (334)
Q Consensus 93 --~~dl--------~~~~~~~~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~ 162 (334)
+.|- .+.+.. ..+.|..|||.+.++...+.++..+||...|.| .++. .......+..+++|.|.
T Consensus 362 av~rd~~tge~~LeaGALVl-AD~Gv~cIDEfdKm~~~dr~aihEaMEQQtIsI--aKAG---I~atLnARcsvLAAaNP 435 (682)
T COG1241 362 AVVRDKVTGEWVLEAGALVL-ADGGVCCIDEFDKMNEEDRVAIHEAMEQQTISI--AKAG---ITATLNARCSVLAAANP 435 (682)
T ss_pred EEEECCCCCEEEEECCEEEE-ECCCEEEEEECCCCCHHHHHHHHHHHHHCEEEE--CCCC---EEEECCHHHHHHHHHCC
T ss_conf 99970677607886777999-249779997056777678999999987527512--0554---25411144445665188
Q ss_pred CC-------------CCCHHHHHCCCCEEECCC-CCHH---HHHH-H----------------------------HHHH-
Q ss_conf 43-------------355454420120673264-5479---9999-8----------------------------7776-
Q gi|254780552|r 163 VG-------------LLTNPLQDRFGIPIRLNF-YEIE---DLKT-I----------------------------VQRG- 195 (334)
Q Consensus 163 ~~-------------~l~~~l~sR~~~~~~~~~-~~~~---el~~-i----------------------------l~~~- 195 (334)
.. .+++||+|||.++|-+.- .+.+ ++.. | +++.
T Consensus 436 ~~Gryd~~~~~~enI~l~~~lLSRFDLifvl~D~~d~~~D~~ia~hil~~h~~~~~~~~~~~~~~~~~~~~~~~~lrkYI 515 (682)
T COG1241 436 KFGRYDPKKTVAENINLPAPLLSRFDLIFVLKDDPDEEKDEEIAEHILDKHRGEEPEETISLDGVDEVEERDFELLRKYI 515 (682)
T ss_pred CCCCCCCCCCHHHHCCCCHHHHHHCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 77767999997885589835775177547705788853359999999998634565322333322222346589999999
Q ss_pred --HHHC-CCHHHHHHHHHHHCC-----CCC-----------CHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf --5412-101111111233202-----210-----------1567887775433345541588642778787654210
Q gi|254780552|r 196 --AKLT-GLAVTDEAACEIAMR-----SRG-----------TPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 (334)
Q Consensus 196 --~~~~-~i~~~~~al~~ia~~-----s~G-----------d~R~AlnlLe~v~d~a~~~~~~~i~~~~~~~~l~~~~ 254 (334)
|+.. --.++++|...|... .++ ++|..-.+.+..-..|-+.-...++.+++++|+..+.
T Consensus 516 ~YAR~~v~P~lt~ea~e~l~~~Yv~~Rk~~~~~~~~~~~piT~RqLEsiiRLaeA~Ak~rLS~~V~~eD~~eAi~lv~ 593 (682)
T COG1241 516 SYARKNVTPVLTEEAREELEDYYVEMRKKSALVEEKRTIPITARQLESIIRLAEAHAKMRLSDVVEEEDVDEAIRLVD 593 (682)
T ss_pred HHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf 987505896128999999999998765201223456754561999999999999988654447778899999999999
No 193
>KOG2227 consensus
Probab=99.03 E-value=2e-09 Score=77.09 Aligned_cols=196 Identities=20% Similarity=0.233 Sum_probs=112.7
Q ss_pred HHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCC-----CCCCCCCCCCCHHHH-HHHHH
Q ss_conf 782397999999999999866146776707997378855778999999861898-----531257644334676-66666
Q gi|254780552|r 28 EEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVN-----FRSTSGPVIAKAGDL-AALLT 101 (334)
Q Consensus 28 ~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~-----~~~~s~~~~~~~~dl-~~~~~ 101 (334)
+-++|-+.-...++.|+..... .....++-.+|-||||||-+-.-+-..+.+. .+.+|...+..++.+ .+++.
T Consensus 150 ~~l~gRe~e~~~v~~F~~~hle-~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~ 228 (529)
T KOG2227 150 GTLKGRELEMDIVREFFSLHLE-LNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIFS 228 (529)
T ss_pred CCCCCHHHHHHHHHHHHHHHHH-CCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 7765258889999999985431-266764575179986548899999874034316651699851235425889999988
Q ss_pred HH------------------------HCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEE
Q ss_conf 41------------------------016378887576169899999999863475100256787652000466740055
Q gi|254780552|r 102 NL------------------------EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLI 157 (334)
Q Consensus 102 ~~------------------------~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI 157 (334)
++ +.--|+.+||++.|-...|.+||...|= .+-|+ .++.+|
T Consensus 229 ~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFew-------p~lp~--------sr~iLi 293 (529)
T KOG2227 229 SLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEW-------PKLPN--------SRIILI 293 (529)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHCCCCEEEEEHHC-------CCCCC--------CEEEEE
T ss_conf 898874289504789999999875256338987212567760465314321001-------36776--------605666
Q ss_pred ECCCCCC---CCCHHHHHCCC---CEEECCCCCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHCC---CCCCHHHHHHHHH
Q ss_conf 2045543---35545442012---0673264547999998777654121-01111111233202---2101567887775
Q gi|254780552|r 158 AATTRVG---LLTNPLQDRFG---IPIRLNFYEIEDLKTIVQRGAKLTG-LAVTDEAACEIAMR---SRGTPRIAGRLLR 227 (334)
Q Consensus 158 ~ATt~~~---~l~~~l~sR~~---~~~~~~~~~~~el~~il~~~~~~~~-i~~~~~al~~ia~~---s~Gd~R~AlnlLe 227 (334)
|--|-.. ...+-|..|+. -+..|.||+.+++.+|++.....+. ..+-+.|+..+|+. ..||+|.|+.+++
T Consensus 294 GiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R 373 (529)
T KOG2227 294 GIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCR 373 (529)
T ss_pred EEHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 40013557777766654025788746655687889999999999740544333038999999986257612899999998
Q ss_pred HHHHHHHHHCCC
Q ss_conf 433345541588
Q gi|254780552|r 228 RVRDFAEVAHAK 239 (334)
Q Consensus 228 ~v~d~a~~~~~~ 239 (334)
++...+...+..
T Consensus 374 ~aiEI~E~e~r~ 385 (529)
T KOG2227 374 RAIEIAEIEKRK 385 (529)
T ss_pred HHHHHHHHHHHH
T ss_conf 788999998741
No 194
>KOG1051 consensus
Probab=99.02 E-value=8.7e-10 Score=79.35 Aligned_cols=107 Identities=27% Similarity=0.374 Sum_probs=72.0
Q ss_pred HHHCCHHHHHHHHHHHHHHHHH---CCCCCCCEEEECCCCCCHHHHHHHHHHHC-CCC--CCCCCCCCCCCHH-------
Q ss_conf 7823979999999999998661---46776707997378855778999999861-898--5312576443346-------
Q gi|254780552|r 28 EEFTGQVEACSNLKVFIEAAKA---RAEALDHVLFVGPPGLGKTTLAQVVAREL-GVN--FRSTSGPVIAKAG------- 94 (334)
Q Consensus 28 ~dviGQ~~~~~~l~~~i~a~~~---~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l-~~~--~~~~s~~~~~~~~------- 94 (334)
+.|+||++++..+..++.-.+. +.++.-.++|.||.|+|||-+|+.+|..+ |.+ ++.+.-+.++.+.
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskligsp~ 641 (898)
T KOG1051 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKLIGSPP 641 (898)
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHCCCCCC
T ss_conf 54466377899999999843203578888858999788841389999999999728864268961455555653048995
Q ss_pred -----HHHHHHH---HHHCCCHHHHHHHHHCCHHHHHHHHHHHHCCCC
Q ss_conf -----7666666---410163788875761698999999998634751
Q gi|254780552|r 95 -----DLAALLT---NLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQL 134 (334)
Q Consensus 95 -----dl~~~~~---~~~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i 134 (334)
+..+-++ .-++..|+++|||.......|..|+.+|++|++
T Consensus 642 gyvG~e~gg~LteavrrrP~sVvLfdeIEkAh~~v~n~llq~lD~Grl 689 (898)
T KOG1051 642 GYVGKEEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLDRGRL 689 (898)
T ss_pred CCCCCHHHHHHHHHHHCCCCEEEEEECHHHCCHHHHHHHHHHHHCCCC
T ss_conf 554630577888997169965999830222288899999999862740
No 195
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=99.02 E-value=4.4e-09 Score=75.07 Aligned_cols=170 Identities=22% Similarity=0.311 Sum_probs=104.0
Q ss_pred CEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHH-----------------HHHHHHHCCCHHHHHHHHHCC
Q ss_conf 079973788557789999998618985312576443346766-----------------666641016378887576169
Q gi|254780552|r 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA-----------------ALLTNLEDRDVLFIDEIHRLS 118 (334)
Q Consensus 56 h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~~~~~~~~dl~-----------------~~~~~~~~~~vlfiDEihrl~ 118 (334)
.+|+.|.||+||||+...+|+.+|..+..+|-+.-+.--|+. ..+.+++.|..+++||++-.+
T Consensus 1545 pilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~G~WVlLDEiNLaS 1624 (4600)
T COG5271 1545 PILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDGGWVLLDEINLAS 1624 (4600)
T ss_pred CEEECCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCCCCCCCEEEECCCHHHHHHHCCCEEEEEHHHHHH
T ss_conf 54622799866789999999974572478632011028987377887556761674246899985349879962410327
Q ss_pred HHHHHHHHHHHHCCC-CCCCCCCCCC-CCEEECCCCCCEEEECCCCCC-------CCCHHHHHCCCCEEECCCCCHHHHH
Q ss_conf 899999999863475-1002567876-520004667400552045543-------3554544201206732645479999
Q gi|254780552|r 119 IIVEEILYPAMEDFQ-LDLMVGEGPS-ARSVKINLSRFTLIAATTRVG-------LLTNPLQDRFGIPIRLNFYEIEDLK 189 (334)
Q Consensus 119 ~~~q~~Ll~~mE~~~-i~i~~~~~~~-a~~~~~~~~~f~lI~ATt~~~-------~l~~~l~sR~~~~~~~~~~~~~el~ 189 (334)
-++.+.|=.+++-+. ..| |. .+++... |.| .|+|+..|. .+|..+.+||..+ .++-|+.+++.
T Consensus 1625 QSVlEGLNacLDhR~eayI-----PEld~~f~~H-pnf-rVFAaqNPq~qggGRKgLPkSF~nRFsvV-~~d~lt~dDi~ 1696 (4600)
T COG5271 1625 QSVLEGLNACLDHRREAYI-----PELDKTFDVH-PNF-RVFAAQNPQDQGGGRKGLPKSFLNRFSVV-KMDGLTTDDIT 1696 (4600)
T ss_pred HHHHHHHHHHHHHCCCCCC-----CCCCCEEECC-CCE-EEEEECCCHHCCCCCCCCCHHHHHHHHEE-EECCCCCCHHH
T ss_conf 8899888998850144256-----3113325216-870-55420481102798566878886221157-75034530099
Q ss_pred HHHHHHHHHCC-----------CHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHHHH
Q ss_conf 98777654121-----------01111111233202210-----1567887775433345
Q gi|254780552|r 190 TIVQRGAKLTG-----------LAVTDEAACEIAMRSRG-----TPRIAGRLLRRVRDFA 233 (334)
Q Consensus 190 ~il~~~~~~~~-----------i~~~~~al~~ia~~s~G-----d~R~AlnlLe~v~d~a 233 (334)
.|+...-...+ ..+.+..-+-+.--+-| +.|..++-|++..++.
T Consensus 1697 ~Ia~~~yp~v~~d~~~kiik~ms~lqd~i~k~~~~g~~gsPwefnlrdTLRwl~llNq~~ 1756 (4600)
T COG5271 1697 HIANKMYPQVNEDWRLKIIKFMSRLQDNIEKDISFGSFGSPWEFNLRDTLRWLILLNQVG 1756 (4600)
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHCCC
T ss_conf 999851776576889999999988777666532136779973876177899999862058
No 196
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.99 E-value=6.3e-10 Score=80.24 Aligned_cols=104 Identities=29% Similarity=0.438 Sum_probs=63.0
Q ss_pred CHHHH----CCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHC---CCCCCCCCCCCC-CCHHH--
Q ss_conf 87782----397999999999999866146776707997378855778999999861---898531257644-33467--
Q gi|254780552|r 26 TLEEF----TGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL---GVNFRSTSGPVI-AKAGD-- 95 (334)
Q Consensus 26 ~l~dv----iGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l---~~~~~~~s~~~~-~~~~d-- 95 (334)
+|+-+ =||..+...-+.+++... .....+||+||||||||.||-+||+++ |.....++.+.+ .+.++
T Consensus 67 ~Feny~~~~~~q~~al~~a~~y~enf~---~~~~gLlF~G~~GTGKThLA~aIan~Li~~G~sVlf~t~~dLl~~lr~t~ 143 (242)
T PRK07952 67 SFENYRVECEGQMNALSKARQYVEEFD---GNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTF 143 (242)
T ss_pred EEECEECCCHHHHHHHHHHHHHHHHHC---CCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHH
T ss_conf 421201587778999999999998654---38871799789999789999999999998799499977999999999998
Q ss_pred ------HHHHHHHHHCCCHHHHHHHH--HCCHHHHHHHHHHHHCC
Q ss_conf ------66666641016378887576--16989999999986347
Q gi|254780552|r 96 ------LAALLTNLEDRDVLFIDEIH--RLSIIVEEILYPAMEDF 132 (334)
Q Consensus 96 ------l~~~~~~~~~~~vlfiDEih--rl~~~~q~~Ll~~mE~~ 132 (334)
-..++..+..-++|+|||+- ..+....+.|+..+..+
T Consensus 144 ~~~~~~e~~~l~~l~~~dLLIiDdlG~e~~t~~~~~~lf~iId~R 188 (242)
T PRK07952 144 RNSETSEEQLLNDLSNVDLLVIDEIGVQTESRYEKVIINQIVDRR 188 (242)
T ss_pred HCCCCCHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHH
T ss_conf 068756999999863189898730146658888999999999999
No 197
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.98 E-value=2.3e-09 Score=76.83 Aligned_cols=127 Identities=19% Similarity=0.241 Sum_probs=70.1
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHCCCC-----CCCCC-CCC----------------CC-CHHHHHHHHHHHH----CC
Q ss_conf 6707997378855778999999861898-----53125-764----------------43-3467666666410----16
Q gi|254780552|r 54 LDHVLFVGPPGLGKTTLAQVVARELGVN-----FRSTS-GPV----------------IA-KAGDLAALLTNLE----DR 106 (334)
Q Consensus 54 ~~h~Lf~GPpG~GKTtlA~iiA~~l~~~-----~~~~s-~~~----------------~~-~~~dl~~~~~~~~----~~ 106 (334)
-+.+||.||||||||-+|+.+|..+... +..+. .|+ +. +++-+...+..+. +.
T Consensus 194 KknvIL~G~pGtGKT~lAk~lA~~l~g~~~~~rv~~VqfhpsysYEDfi~Gyrp~~~gf~~~~G~f~~~~~~A~~~p~~~ 273 (459)
T PRK11331 194 KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKK 273 (459)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHCCCCCCCCCCEECCCHHHHHHHHHHHCCCCC
T ss_conf 88279658999887899999999970788778468998358866178764605688861326836999999998498987
Q ss_pred CHHHHHHHHHCCHHH-HHHHHHHHHCCCC----CCCCCC-CCCCCEEECCCCCCEEEECCCCCC----CCCHHHHHCCCC
Q ss_conf 378887576169899-9999998634751----002567-876520004667400552045543----355454420120
Q gi|254780552|r 107 DVLFIDEIHRLSIIV-EEILYPAMEDFQL----DLMVGE-GPSARSVKINLSRFTLIAATTRVG----LLTNPLQDRFGI 176 (334)
Q Consensus 107 ~vlfiDEihrl~~~~-q~~Ll~~mE~~~i----~i~~~~-~~~a~~~~~~~~~f~lI~ATt~~~----~l~~~l~sR~~~ 176 (334)
-+++||||+|-|-.. .--|+..||..+- .+.+.- ..+.....++ +...+||..|-.. .+..+||.||.+
T Consensus 274 y~~iideinr~~~~~~fgel~~liE~dkR~~~~~~~l~ys~~~~~~f~vP-~Nl~iigtmNtadrs~~~~d~alrRrf~f 352 (459)
T PRK11331 274 YVFIIDEINRANLSKVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVP-ENVYIIGLMNTADRSLAVVDYALRRRFSF 352 (459)
T ss_pred EEEEEEHHHCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCEECCC-CCEEEEEECCCCCHHHHHHHHHHHHHHCC
T ss_conf 69998432033889999999999641256765225630036888533468-86599985033410688789999865021
Q ss_pred EEECCC
Q ss_conf 673264
Q gi|254780552|r 177 PIRLNF 182 (334)
Q Consensus 177 ~~~~~~ 182 (334)
+. +.|
T Consensus 353 ~~-~~p 357 (459)
T PRK11331 353 ID-IEP 357 (459)
T ss_pred EE-CCC
T ss_conf 21-589
No 198
>pfam01637 Arch_ATPase Archaeal ATPase. This family contain a conserved P-loop motif that is involved in binding ATP. This family is almost exclusively found in archaebacteria and particularly in Methanococcus jannaschii that encodes sixteen members of this family.
Probab=98.98 E-value=5.1e-09 Score=74.65 Aligned_cols=170 Identities=18% Similarity=0.159 Sum_probs=101.1
Q ss_pred HCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCC---CCCCCC------------------
Q ss_conf 23979999999999998661467767079973788557789999998618985---312576------------------
Q gi|254780552|r 30 FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF---RSTSGP------------------ 88 (334)
Q Consensus 30 viGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~~---~~~s~~------------------ 88 (334)
|+|-++=.+.++.++++.. -.-+++|||.|+|||||++-.++++.... ...++.
T Consensus 1 F~~Re~EL~~L~~~~~~~~-----~~~ivi~G~RR~GKTsLi~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~ 75 (223)
T pfam01637 1 FFDREKELKELEEWAERGT-----YPIIVVYGPRRCGKTALLREFLEELRELGYRVIYYDPLRREFEEKLDRFEEAKRLA 75 (223)
T ss_pred CCCHHHHHHHHHHHHHCCC-----CCEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_conf 9897999999999996699-----71899986887879999999998633468528999514443799999888889999
Q ss_pred -----CCCC---------HHHHHHHH---HHHHCCCHHHHHHHHHCCH-----HHHHHHHHHHHCCCCCCCCCCCCCCCE
Q ss_conf -----4433---------46766666---6410163788875761698-----999999998634751002567876520
Q gi|254780552|r 89 -----VIAK---------AGDLAALL---TNLEDRDVLFIDEIHRLSI-----IVEEILYPAMEDFQLDLMVGEGPSARS 146 (334)
Q Consensus 89 -----~~~~---------~~dl~~~~---~~~~~~~vlfiDEihrl~~-----~~q~~Ll~~mE~~~i~i~~~~~~~a~~ 146 (334)
.+.+ ..++..++ ...+.+.|++|||...+.. .....|...++...
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDEfq~l~~~~~~~~~~~~l~~~~d~~~------------- 142 (223)
T pfam01637 76 EALGDALPKIGIAKSKLAFLSLTLLFELLKRKGKKIAIIIDEVQYAIGLNGAESYVKLLLNLIDYPP------------- 142 (223)
T ss_pred HHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHCCCCHHHHHHHHHHHHHHH-------------
T ss_conf 9987651233222112078899999999985599659997016776402443059999999999752-------------
Q ss_pred EECCCCCCEEEECCCCCCC------CCHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHH
Q ss_conf 0046674005520455433------5545442012067326454799999877765412101111111233202210156
Q gi|254780552|r 147 VKINLSRFTLIAATTRVGL------LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPR 220 (334)
Q Consensus 147 ~~~~~~~f~lI~ATt~~~~------l~~~l~sR~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~Gd~R 220 (334)
.-++.++|.+...... -..|+-.|+.. +++++++.++..+.+++..+..+++++++.+..+-...+|-|+
T Consensus 143 ---~~~~~~~I~~GS~~~~m~~~~~~~~plygR~~~-i~l~p~~~~~~~efl~~~f~e~~~~~~~~~~~~iy~~~gG~P~ 218 (223)
T pfam01637 143 ---KEYHLIVVLCGSSEGLTIELLDYKSPLYGRHRW-ALLKPFDFETAWNFLREGFEELYEPGPKEEFEEVWRLLGGNPG 218 (223)
T ss_pred ---CCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCE-EEECCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHH
T ss_conf ---457758999727199999986205653575022-7726899899999999999984789998999999999698389
Q ss_pred H
Q ss_conf 7
Q gi|254780552|r 221 I 221 (334)
Q Consensus 221 ~ 221 (334)
-
T Consensus 219 y 219 (223)
T pfam01637 219 Y 219 (223)
T ss_pred H
T ss_conf 9
No 199
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF; InterPro: IPR014317 Members of this protein are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, found in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol and filamentous phage infection..
Probab=98.97 E-value=7e-09 Score=73.82 Aligned_cols=167 Identities=25% Similarity=0.340 Sum_probs=115.4
Q ss_pred CEEEECCCCCCHHHHHHHHH---HHCCCCCCCCCCCCCCCH---HHH----HHHHHHHH----------CCCHHHHHHHH
Q ss_conf 07997378855778999999---861898531257644334---676----66666410----------16378887576
Q gi|254780552|r 56 HVLFVGPPGLGKTTLAQVVA---RELGVNFRSTSGPVIAKA---GDL----AALLTNLE----------DRDVLFIDEIH 115 (334)
Q Consensus 56 h~Lf~GPpG~GKTtlA~iiA---~~l~~~~~~~s~~~~~~~---~dl----~~~~~~~~----------~~~vlfiDEih 115 (334)
++|.-|-+||||=.+|.=+- +==.-+|+.+|+.+++.. +++ .+.||.++ ++.-||+|||=
T Consensus 24 PVLiiGERGTGKELiA~RLHyLS~RW~~Plv~LNCAALse~LldSELFGHEaGAFTGA~~rh~GRFERAdGGTLFLDElA 103 (349)
T TIGR02974 24 PVLIIGERGTGKELIAARLHYLSKRWQQPLVKLNCAALSENLLDSELFGHEAGAFTGAKKRHEGRFERADGGTLFLDELA 103 (349)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCCHHHHCCCCCCCCEECCCCCCHHHHHH
T ss_conf 66886146746899998853324655488626610127825555665310010013030468898544368873888871
Q ss_pred HCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCC-CCCC------HHHHHC--CCCEEECCCC--C
Q ss_conf 169899999999863475100256787652000466740055204554-3355------454420--1206732645--4
Q gi|254780552|r 116 RLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV-GLLT------NPLQDR--FGIPIRLNFY--E 184 (334)
Q Consensus 116 rl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~-~~l~------~~l~sR--~~~~~~~~~~--~ 184 (334)
..+..+||-||.++|-|..-=+= .+++++.| +-+|+|||.. |.+- .=|+|| |. ++.+.|+ -
T Consensus 104 tas~~VQEKLLRViEYG~fERVG----G~~~l~vD---VRlvaATN~DLP~lA~~G~FRaDLLDRLAFD-Vi~LPPLR~R 175 (349)
T TIGR02974 104 TASLAVQEKLLRVIEYGEFERVG----GSQTLKVD---VRLVAATNADLPALAAEGRFRADLLDRLAFD-VITLPPLRER 175 (349)
T ss_pred CCCHHHHHHHHHHHCCCCEEECC----CCCEEEEC---CEEEECCCCCHHHHHHCCCCCCHHHHHHHHH-HCCCCCCCCC
T ss_conf 42167678661201013033017----86047735---1367621413698986589840145544565-5079788887
Q ss_pred HHHHHHHHHH----HHHHCCCH----HHHHHHHHHHCCC-CCCHHHHHHHHHHHH
Q ss_conf 7999998777----65412101----1111112332022-101567887775433
Q gi|254780552|r 185 IEDLKTIVQR----GAKLTGLA----VTDEAACEIAMRS-RGTPRIAGRLLRRVR 230 (334)
Q Consensus 185 ~~el~~il~~----~~~~~~i~----~~~~al~~ia~~s-~Gd~R~AlnlLe~v~ 230 (334)
.+||....+. .|..++++ +++.|...|-.++ =|+.|-.=|..||..
T Consensus 176 ~~DI~lLAe~FA~~Ma~EL~~~~F~GFt~~A~~~L~~Y~WPGNvRELkNvvERsV 230 (349)
T TIGR02974 176 QEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEYHWPGNVRELKNVVERSV 230 (349)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 2327899999999999970786551143899999970688885212444676665
No 200
>COG1067 LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=7.1e-09 Score=73.78 Aligned_cols=233 Identities=24% Similarity=0.254 Sum_probs=141.6
Q ss_pred HHHCCCCCHHHHCCHHHHHHHHHHHHHH-HHHCCCCCCCEEEEC----CCCCCHHHHHHHHHHHC----------CCCCC
Q ss_conf 8750789877823979999999999998-661467767079973----78855778999999861----------89853
Q gi|254780552|r 19 ISLLRPRTLEEFTGQVEACSNLKVFIEA-AKARAEALDHVLFVG----PPGLGKTTLAQVVAREL----------GVNFR 83 (334)
Q Consensus 19 ~~~lRP~~l~dviGQ~~~~~~l~~~i~a-~~~~~~~~~h~Lf~G----PpG~GKTtlA~iiA~~l----------~~~~~ 83 (334)
.+..+|+++++..||+.-....+..... ...-....-|.+.++ ++|++++..++++-.+. ...|.
T Consensus 95 ~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~iv~~~~~~~~~~~~~~~~~~~ 174 (647)
T COG1067 95 VPAGRPESFSELLGQKAEEKAEYLSYLILLALLGPIEQQIILYGYNALLPGVLYAVAARIVLYEAKILKRSAVSVPKNFV 174 (647)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 66668722579998563678877776668876224666665404553462167789988887653125310333045565
Q ss_pred CCC----CCCCC----CH----HHH------------------HHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHCCC
Q ss_conf 125----76443----34----676------------------6666641016378887576169899999999863475
Q gi|254780552|r 84 STS----GPVIA----KA----GDL------------------AALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQ 133 (334)
Q Consensus 84 ~~s----~~~~~----~~----~dl------------------~~~~~~~~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~ 133 (334)
..+ +|+.. .. +|+ .+.+..++ +.||||||+..|+...|..+|.+|++.+
T Consensus 175 ~~~~~~~~p~v~a~~~~~~~LlG~Vr~~~~qG~l~~~~~~~i~pGaVHkAn-gGVLiIdei~lL~~~~~w~~LKa~~~k~ 253 (647)
T COG1067 175 ELSPLDGAPVVFATGAIADQLLGSVRHDPYQGGLGTTGHIRVKPGAVHKAN-GGVLIIDEIGLLAQPLQWKLLKALLDKE 253 (647)
T ss_pred HCCCCCCCCEEECCCCCHHHCCEEEEECCCCCCCCCCCCCCCCCCCCCCCC-CCEEEEEHHHHHCCHHHHHHHHHHHHCC
T ss_conf 402355896796687774653612777688876678886423676110125-8479997566328398999999998244
Q ss_pred CCCCCCCCCCCCEEECCC----CCCEEEECCCCC--CCCCHHHHHC---CCCEEECCCC---CHHHHHHHHH----HHHH
Q ss_conf 100256787652000466----740055204554--3355454420---1206732645---4799999877----7654
Q gi|254780552|r 134 LDLMVGEGPSARSVKINL----SRFTLIAATTRV--GLLTNPLQDR---FGIPIRLNFY---EIEDLKTIVQ----RGAK 197 (334)
Q Consensus 134 i~i~~~~~~~a~~~~~~~----~~f~lI~ATt~~--~~l~~~l~sR---~~~~~~~~~~---~~~el~~il~----~~~~ 197 (334)
-. .++.++......+.. .+|.+|++.+.- ..+-+|++|| |++...|+.+ ++++-.+.++ ..++
T Consensus 254 ~~-~~~~~~~s~~~~v~~e~vP~d~klI~~Gn~~~l~~l~~~~~~r~~g~~y~ae~~~~m~~~~~nr~k~~~~~~q~v~~ 332 (647)
T COG1067 254 QP-IWGSSEPSSGAPVRPESVPLDLKLILAGNREDLEDLHEPDRSRIEGFGYEAEFEDTMPITDANRSKLVQFYVQELAR 332 (647)
T ss_pred CC-CCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHCCCCHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 56-65767402486157888556548994088999976553477788405568997688899868999999999999986
Q ss_pred HCC-CHHHHHHHHHHHCCCC---C-------CHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 121-0111111123320221---0-------156788777543334554158864277878765421
Q gi|254780552|r 198 LTG-LAVTDEAACEIAMRSR---G-------TPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRL 253 (334)
Q Consensus 198 ~~~-i~~~~~al~~ia~~s~---G-------d~R~AlnlLe~v~d~a~~~~~~~i~~~~~~~~l~~~ 253 (334)
..+ ..++.+|...|.+.+. | .+|...|+++.+.+.|...+.+-|+.++++++++..
T Consensus 333 d~~ip~~~~~Av~~li~~a~R~Ag~~~~Ltl~~rdl~~lv~~A~~ia~~~~~~~I~ae~Ve~a~~~~ 399 (647)
T COG1067 333 DGNIPHLDKDAVEELIREAARRAGDQNKLTLRLRDLGNLVREAGDIAVSEGRKLITAEDVEEALQKR 399 (647)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 2899988889999999999986165650214899999999986688853786647699999999874
No 201
>KOG1808 consensus
Probab=98.95 E-value=6.4e-09 Score=74.05 Aligned_cols=194 Identities=23% Similarity=0.272 Sum_probs=123.3
Q ss_pred CCHHH-HCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHH-----
Q ss_conf 98778-239799999999999986614677670799737885577899999986189853125764433467666-----
Q gi|254780552|r 25 RTLEE-FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAA----- 98 (334)
Q Consensus 25 ~~l~d-viGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~~~~~~~~dl~~----- 98 (334)
..++. +|=-..+++.+.....|...+. + ++||-||.|+|||++..-+|..++.+++.++-..-....+..+
T Consensus 413 ~~~~~~~i~T~~vq~~la~~~~a~~~~~--~-pillqG~tssGKtsii~~la~~~g~~~vrinnhehtd~qeyig~y~~~ 489 (1856)
T KOG1808 413 TSEATHYIITPRVQKNLADLARAISSGK--F-PILLQGPTSSGKTSIIKELARATGKNIVRINNHEHTDLQEYIGTYVAD 489 (1856)
T ss_pred CCCCCEEECCHHHHHHHHHHHHHHHCCC--C-CEEEECCCCCCCHHHHHHHHHHHCCCCEEHHCCCCCHHHHHHHHHEEC
T ss_conf 5666412046899988999999996589--9-867754767681159999999854673420024633399998665007
Q ss_pred -----------HHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHC-CCCCCCCCCCCCCCEEECCCCCCEEEECCCCCC--
Q ss_conf -----------666410163788875761698999999998634-751002567876520004667400552045543--
Q gi|254780552|r 99 -----------LLTNLEDRDVLFIDEIHRLSIIVEEILYPAMED-FQLDLMVGEGPSARSVKINLSRFTLIAATTRVG-- 164 (334)
Q Consensus 99 -----------~~~~~~~~~vlfiDEihrl~~~~q~~Ll~~mE~-~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~~-- 164 (334)
.+.++-+|+++++||+|.-+....++|...+++ +.+.+--+ .+.+..+ +.| ++.||-+++
T Consensus 490 ~~g~l~freg~LV~Alr~G~~~vlD~lnla~~dvL~aLnrllddnRel~ipe~----~rlv~~h-~~f-~lfatqn~~~~ 563 (1856)
T KOG1808 490 DNGDLVFREGVLVQALRNGDWIVLDELNLAPHDVLEALNRLLDDNRELFIPET----QRLVKAH-PEF-MLFATQNPPGT 563 (1856)
T ss_pred CCCCEEEEHHHHHHHHHHCCEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCC----CEEECCC-CCH-HHHHHCCCCCC
T ss_conf 88972553468999987087798402012406789999840454041256344----3232247-012-34543077666
Q ss_pred -----CCCHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCH-----------HHHHHHHHHHCCC--CCCHHHHHHHH
Q ss_conf -----35545442012067326454799999877765412101-----------1111112332022--10156788777
Q gi|254780552|r 165 -----LLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLA-----------VTDEAACEIAMRS--RGTPRIAGRLL 226 (334)
Q Consensus 165 -----~l~~~l~sR~~~~~~~~~~~~~el~~il~~~~~~~~i~-----------~~~~al~~ia~~s--~Gd~R~AlnlL 226 (334)
.+..++++|| +.++|.....+++..|+...|...... .-...+..|-..+ -|++|...+.+
T Consensus 564 y~grk~lsRa~~~rf-~e~~f~~~~e~e~~~i~~~~~~i~~~~~~k~~~~~~~L~~~rqls~i~e~~~~~gtlrd~f~w~ 642 (1856)
T KOG1808 564 YGGRKILSRALRNRF-IELHFDDIGEEELEEILEHRCGIPPSYEKKMVQVMRELSLRRQLSRIFEQKPSFGTLRDLFRWL 642 (1856)
T ss_pred CCHHHHHHHCCCCCC-HHHHHHHCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
T ss_conf 531566553144400-2353552571455556402356982499999998656666777766787544557828888888
Q ss_pred HH
Q ss_conf 54
Q gi|254780552|r 227 RR 228 (334)
Q Consensus 227 e~ 228 (334)
.+
T Consensus 643 ~r 644 (1856)
T KOG1808 643 LR 644 (1856)
T ss_pred HH
T ss_conf 63
No 202
>TIGR01818 ntrC nitrogen regulation protein NR(I); InterPro: IPR010114 This entry represents Nitrogen regulatory protein C (NtrC), which is a bacterial enhancer-binding protein that activates the transcription of genes encoding enzymes required for nitrogen metabolism. It is phosphorylated by NtrB and interacts with sigma-54. One of the best studied examples is its activation of the gene glnA, which encodes the enzyme glutamine synthetase.. NtrC is composed of three domains , . The 124 residue N-terminal domain is homologous to receiver domains of other response regulator proteins in two-component signal transduction systems , . The 240 residue central domain of NtrC is homologous to a domain found in all activators of the sigma-54 RNA polymerase holoenzyme , . The C-terminal domain has been indicated to contain the determinants necessary for both DNA-binding and dimerization of full-length NtrC.; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0009399 nitrogen fixation, 0050906 detection of stimulus during sensory perception.
Probab=98.93 E-value=4.6e-08 Score=68.80 Aligned_cols=210 Identities=24% Similarity=0.283 Sum_probs=133.3
Q ss_pred CHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHC---CCCCCCCCCCCCCCHHHHH-----
Q ss_conf 87782397999999999999866146776707997378855778999999861---8985312576443346766-----
Q gi|254780552|r 26 TLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL---GVNFRSTSGPVIAKAGDLA----- 97 (334)
Q Consensus 26 ~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l---~~~~~~~s~~~~~~~~dl~----- 97 (334)
.--++||.--+.+.+-..|- -..+. -=++|..|-.||||=..|+++=+.- +.+|+.+|--+| |+|+.
T Consensus 133 ~~~~liG~aPAMQevfR~ig-RL~~~--~l~VlI~GESGTGKELVA~ALH~~s~R~~~PFiAlNmAAI--P~~L~ESELF 207 (471)
T TIGR01818 133 DSAELIGEAPAMQEVFRAIG-RLSRS--DLSVLINGESGTGKELVARALHRHSPRARGPFIALNMAAI--PKDLIESELF 207 (471)
T ss_pred CCCCCCCCCCHHHHHHHHHH-HHCCC--CCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEECHHHC--CHHHHHHHHC
T ss_conf 56212368851689999999-75169--6058885575775899999840137555777327302322--2466554321
Q ss_pred ----HHHHHHH----------CCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCC
Q ss_conf ----6666410----------16378887576169899999999863475100256787652000466740055204554
Q gi|254780552|r 98 ----ALLTNLE----------DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163 (334)
Q Consensus 98 ----~~~~~~~----------~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~ 163 (334)
+.|+.+. .|.-||+|||--++-..|--||.++.++.-+-+=|..| ++.| +-.|+||.++
T Consensus 208 GHEkGAFTGA~~~~~GRFEQA~GGTLFLDEIGDMPl~~QTRLLRVL~~G~f~rVGG~~p----~k~D---VRi~AAThq~ 280 (471)
T TIGR01818 208 GHEKGAFTGANTRRQGRFEQADGGTLFLDEIGDMPLDLQTRLLRVLADGEFYRVGGRTP----IKVD---VRIVAATHQD 280 (471)
T ss_pred CCCCCCCCCCCCCCCCCEEECCCCCEECCCCCCCCHHHHHHHHHHHCCCCEEEECCCEE----EEEE---EEEEECCCHH
T ss_conf 45653000102556777253488821010216787768777988640786577268202----4550---4667336656
Q ss_pred C-------CCCHHHHHCCC-CEEECCCCC--HHHHHHHHHH----HHHHCCC---HHHHHHHHHHHCCC-CCCHHHHHHH
Q ss_conf 3-------35545442012-067326454--7999998777----6541210---11111112332022-1015678877
Q gi|254780552|r 164 G-------LLTNPLQDRFG-IPIRLNFYE--IEDLKTIVQR----GAKLTGL---AVTDEAACEIAMRS-RGTPRIAGRL 225 (334)
Q Consensus 164 ~-------~l~~~l~sR~~-~~~~~~~~~--~~el~~il~~----~~~~~~i---~~~~~al~~ia~~s-~Gd~R~Alnl 225 (334)
= +.=.=|-=|.. +.+++.++- .+|+...+++ .++..++ .+++++++.+-++. =|+.|..-|+
T Consensus 281 Le~lv~~G~FReDLfhRL~Vi~i~lPpLrER~eDi~~L~rhFL~~a~~~l~~~~k~L~~~~~~~L~~~~WPGNVR~LEN~ 360 (471)
T TIGR01818 281 LEALVRQGKFREDLFHRLNVIRIHLPPLRERREDIPRLARHFLALAAKELDVEPKLLSPEALEALKRYDWPGNVRELENV 360 (471)
T ss_pred HHHHHHCCCCHHHHHHHHCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHH
T ss_conf 89996558813555551233462168721226689999999999988742865113488999999725889852457789
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 7543334554158864277878765
Q gi|254780552|r 226 LRRVRDFAEVAHAKTITREIADAAL 250 (334)
Q Consensus 226 Le~v~d~a~~~~~~~i~~~~~~~~l 250 (334)
+.|+ +.+.....|...++...|
T Consensus 361 cR~l---~~la~~~~v~~~d~~~eL 382 (471)
T TIGR01818 361 CRRL---TVLASGDEVLVSDLPAEL 382 (471)
T ss_pred HHHH---HHHCCCCEEEEEECCHHH
T ss_conf 9999---873467646777757655
No 203
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator; InterPro: IPR014264 Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC (see Q06065 from SWISSPROT). These proteins have a Fis family DNA binding sequence, a response regulator receiver domain, and sigma-54 interaction domain. They are found strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria, where members of IPR014265 from INTERPRO and IPR014266 from INTERPRO also occur..
Probab=98.93 E-value=1.7e-09 Score=77.60 Aligned_cols=196 Identities=22% Similarity=0.279 Sum_probs=128.8
Q ss_pred CCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHC---CCCCCCCCCCCCCCH---HHH--
Q ss_conf 987782397999999999999866146776707997378855778999999861---898531257644334---676--
Q gi|254780552|r 25 RTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL---GVNFRSTSGPVIAKA---GDL-- 96 (334)
Q Consensus 25 ~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l---~~~~~~~s~~~~~~~---~dl-- 96 (334)
.++.-+||+..-..++-..|+-.-.-+ -.+|+.|-+||||=-+||.|=+-. +..|+.+|+.+|..- +++
T Consensus 139 t~~~Gli~~~~~m~kic~tIekvA~sd---~TvllLGESGTGKEV~ArA~H~~S~R~~~~FVAINCAAIPEnLLEsELFG 215 (451)
T TIGR02915 139 TALEGLITSSPGMQKICRTIEKVAPSD---ITVLLLGESGTGKEVLARALHELSDRKDKRFVAINCAAIPENLLESELFG 215 (451)
T ss_pred CCCCCEEECCCCHHHHHHHHHHHCCCC---CEEEEECCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHC
T ss_conf 103652206850678988865212000---01301046671178999898420578977734441674575246677603
Q ss_pred --HHHHHHHH----------CCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCC-CCEEEECCCCC
Q ss_conf --66666410----------163788875761698999999998634751002567876520004667-40055204554
Q gi|254780552|r 97 --AALLTNLE----------DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS-RFTLIAATTRV 163 (334)
Q Consensus 97 --~~~~~~~~----------~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~-~f~lI~ATt~~ 163 (334)
.+.|+.+. ++.-||+|||--|+-.-|--||.++-++.|-=+=|- -++| ++-.|+||++.
T Consensus 216 yEKGAFTGA~k~T~GKIE~A~~GTLFLDEIGDLP~~LQAKLLRFLQErVIER~GGR--------~eIPVDVRvvCATnqd 287 (451)
T TIGR02915 216 YEKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDLPLNLQAKLLRFLQERVIERLGGR--------EEIPVDVRVVCATNQD 287 (451)
T ss_pred CCCHHHHHHHCCCCCCEEEECCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHCCCCC--------CCCCCCEEEEECCCHH
T ss_conf 41012422003477616750688301111220676689999987546663105887--------2456142675032246
Q ss_pred ---------------C---C--C-CHHHHHCCCCEEECCCCCHHHH---H-HHHHHHH---HHCCCHHHHHHHHHHHCCC
Q ss_conf ---------------3---3--5-5454420120673264547999---9-9877765---4121011111112332022
Q gi|254780552|r 164 ---------------G---L--L-TNPLQDRFGIPIRLNFYEIEDL---K-TIVQRGA---KLTGLAVTDEAACEIAMRS 215 (334)
Q Consensus 164 ---------------~---~--l-~~~l~sR~~~~~~~~~~~~~el---~-~il~~~~---~~~~i~~~~~al~~ia~~s 215 (334)
| . | .||||||- +|. . ..+++.+ ++..-.+++||+..|-.++
T Consensus 288 L~~~i~eg~FREDLfYRl~Eisi~iPPLR~R~-----------gDa~lLA~~Fl~rf~~~~k~~~~~F~~DA~~ale~h~ 356 (451)
T TIGR02915 288 LKKMIAEGTFREDLFYRLAEISITIPPLRDRD-----------GDAVLLANAFLERFARELKRKAKGFTDDALRALEAHK 356 (451)
T ss_pred HHHHHHCCCCCCCCEEEEEEEEEECCCCCCCH-----------HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCC
T ss_conf 89998548972000134666786258899860-----------1899999999998878733021660699999976069
Q ss_pred -CCCHHHHHHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf -101567887775433345541588642778
Q gi|254780552|r 216 -RGTPRIAGRLLRRVRDFAEVAHAKTITREI 245 (334)
Q Consensus 216 -~Gd~R~AlnlLe~v~d~a~~~~~~~i~~~~ 245 (334)
=|+.|-.-|..+++.-. .....|+.++
T Consensus 357 WPGNvRELEN~vKRAVIM---a~g~qIt~~D 384 (451)
T TIGR02915 357 WPGNVRELENKVKRAVIM---AEGNQITAED 384 (451)
T ss_pred CCCCHHHHHCHHHEEEEE---CCCCCCCHHH
T ss_conf 988415440300213453---3787135654
No 204
>KOG0478 consensus
Probab=98.89 E-value=6.9e-08 Score=67.72 Aligned_cols=145 Identities=26% Similarity=0.281 Sum_probs=85.9
Q ss_pred HHCCHHHHHHHHHHHHHHHH---------HCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCC---------C
Q ss_conf 82397999999999999866---------14677670799737885577899999986189853125764---------4
Q gi|254780552|r 29 EFTGQVEACSNLKVFIEAAK---------ARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPV---------I 90 (334)
Q Consensus 29 dviGQ~~~~~~l~~~i~a~~---------~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~~~---------~ 90 (334)
++.|.|.+|+.+-..+-.+. -|++ -|+||+|-|||||+-+-.-+++-+--. ..+||-- +
T Consensus 430 sIye~edvKkglLLqLfGGt~k~~~~~~~~R~~--INILL~GDPGtsKSqlLqyv~~l~pRg-~yTSGkGsSavGLTayV 506 (804)
T KOG0478 430 SIYELEDVKKGLLLQLFGGTRKEDEKSGRFRGD--INILLVGDPGTSKSQLLQYCHRLLPRG-VYTSGKGSSAVGLTAYV 506 (804)
T ss_pred HHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCC--CEEEEECCCCCCHHHHHHHHHHHCCCC-EEECCCCCCHHCCEEEE
T ss_conf 653442266667788756876322334442455--228994699867899999999747754-04058763022003567
Q ss_pred CCHHHHHHHHH-----HHHCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCC---CCCCCCCEEECCCCCCEEEECCC-
Q ss_conf 33467666666-----4101637888757616989999999986347510025---67876520004667400552045-
Q gi|254780552|r 91 AKAGDLAALLT-----NLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMV---GEGPSARSVKINLSRFTLIAATT- 161 (334)
Q Consensus 91 ~~~~dl~~~~~-----~~~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~---~~~~~a~~~~~~~~~f~lI~ATt- 161 (334)
.+..|-...+. -+..+.|-.|||.+.++-+.+..|+.+||.-.+.|-. -...+|++ ..++|.|
T Consensus 507 trd~dtkqlVLesGALVLSD~GiCCIDEFDKM~dStrSvLhEvMEQQTvSIAKAGII~sLNAR~--------SVLAaANP 578 (804)
T KOG0478 507 TKDPDTRQLVLESGALVLSDNGICCIDEFDKMSDSTRSVLHEVMEQQTLSIAKAGIIASLNARC--------SVLAAANP 578 (804)
T ss_pred EECCCCCEEEEECCCEEECCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCC--------EEEEEECC
T ss_conf 7657655466504848972896577112333327788999999987631174302234216653--------03445354
Q ss_pred ------------CCCCCCHHHHHCCCCEEE-CCCCC
Q ss_conf ------------543355454420120673-26454
Q gi|254780552|r 162 ------------RVGLLTNPLQDRFGIPIR-LNFYE 184 (334)
Q Consensus 162 ------------~~~~l~~~l~sR~~~~~~-~~~~~ 184 (334)
++=.|+++|+|||.+++- |+..+
T Consensus 579 ~~skynp~k~i~eNI~LpptLLSRFDLIylllD~~D 614 (804)
T KOG0478 579 IRSKYNPNKSIIENINLPPTLLSRFDLIFLLLDKPD 614 (804)
T ss_pred CCCCCCCCCCHHHCCCCCHHHHHHHCEEEEEECCCC
T ss_conf 324579997623216788056432337899842753
No 205
>PRK12377 putative replication protein; Provisional
Probab=98.87 E-value=3.1e-09 Score=75.98 Aligned_cols=103 Identities=25% Similarity=0.381 Sum_probs=61.8
Q ss_pred CHHHHC----CHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHC---CCCCCCCCCCCC-C---CHH
Q ss_conf 877823----97999999999999866146776707997378855778999999861---898531257644-3---346
Q gi|254780552|r 26 TLEEFT----GQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL---GVNFRSTSGPVI-A---KAG 94 (334)
Q Consensus 26 ~l~dvi----GQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l---~~~~~~~s~~~~-~---~~~ 94 (334)
+|+.+- ||.++...-+.+..... ....+++|+||||||||.||-.|+.++ |.....++.+.+ . .+.
T Consensus 72 ~f~ny~~~~~~~~~a~~~a~~~~~~F~---~~~~NlIf~G~pGtGKTHLA~AIg~~a~~~G~sVlF~t~~dLv~~L~~a~ 148 (248)
T PRK12377 72 SFANYQVQNDGQRYALSQAKSIADELM---TGCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESY 148 (248)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHH---CCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHH
T ss_conf 634564578789999999999999873---18860899899998788999999999998799699988999999999999
Q ss_pred H----HHHHHHHHHCCCHHHHHHH--HHCCHHHHHHHHHHHHC
Q ss_conf 7----6666664101637888757--61698999999998634
Q gi|254780552|r 95 D----LAALLTNLEDRDVLFIDEI--HRLSIIVEEILYPAMED 131 (334)
Q Consensus 95 d----l~~~~~~~~~~~vlfiDEi--hrl~~~~q~~Ll~~mE~ 131 (334)
+ ....+..+..-++|+|||+ ..+++..++.|+..++.
T Consensus 149 ~~g~~~~k~l~~l~~~dLLIIDElG~~~~s~~~~~llfqlI~~ 191 (248)
T PRK12377 149 DNGQSGEKFLQELCKVDLLVLDEIGIQRETKNEQVVLNQIIDR 191 (248)
T ss_pred HCCCCHHHHHHHHHCCCEEEEHHCCCCCCCHHHHHHHHHHHHH
T ss_conf 8485099999997338989860005788986799999999999
No 206
>KOG0480 consensus
Probab=98.87 E-value=2.2e-08 Score=70.81 Aligned_cols=215 Identities=23% Similarity=0.295 Sum_probs=119.2
Q ss_pred HHHHCCHHHHHHHHHHHHHHH--H-------HCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCH----
Q ss_conf 778239799999999999986--6-------146776707997378855778999999861898531257644334----
Q gi|254780552|r 27 LEEFTGQVEACSNLKVFIEAA--K-------ARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA---- 93 (334)
Q Consensus 27 l~dviGQ~~~~~~l~~~i~a~--~-------~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~~~~~~~---- 93 (334)
+--+.|++.+|.-+-..+--+ | .||. .|++..|-|||||.-+-+..+.-+-. -+.+||.+.+.+
T Consensus 344 ~PsIyGhe~VK~GilL~LfGGv~K~a~eg~~lRGD--inv~iVGDPgt~KSQfLk~v~~fsPR-~vYtsGkaSSaAGLTa 420 (764)
T KOG0480 344 FPSIYGHELVKAGILLSLFGGVHKSAGEGTSLRGD--INVCIVGDPGTGKSQFLKAVCAFSPR-SVYTSGKASSAAGLTA 420 (764)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC--CEEEEECCCCCCHHHHHHHHHCCCCC-CEEECCCCCCCCCCEE
T ss_conf 76201538998668999847854357898654677--31899579971388999998654873-1585076344346468
Q ss_pred ---H-----HH---HHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCC---CCCCCCEEECCCCCCEEEEC
Q ss_conf ---6-----76---6666641016378887576169899999999863475100256---78765200046674005520
Q gi|254780552|r 94 ---G-----DL---AALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVG---EGPSARSVKINLSRFTLIAA 159 (334)
Q Consensus 94 ---~-----dl---~~~~~~~~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~---~~~~a~~~~~~~~~f~lI~A 159 (334)
+ |. ++.+ .+..+.|-.|||-+.+.-..|-+++.+||.-+|.|.-+ ..-+|++ ..|+|
T Consensus 421 aVvkD~esgdf~iEAGAL-mLADnGICCIDEFDKMd~~dqvAihEAMEQQtISIaKAGv~aTLnARt--------SIlAA 491 (764)
T KOG0480 421 AVVKDEESGDFTIEAGAL-MLADNGICCIDEFDKMDVKDQVAIHEAMEQQTISIAKAGVVATLNART--------SILAA 491 (764)
T ss_pred EEEECCCCCCEEEECCCE-EECCCCEEEECHHCCCCHHHHHHHHHHHHHHEEHHEECCEEEEECCHH--------HHHHH
T ss_conf 997637777335534737-881696688310003570768999999875100033020688622235--------55553
Q ss_pred CCC-------------CCCCCHHHHHCCCCEEEC-CC-----------------------------CCHHHHHHHHHHHH
Q ss_conf 455-------------433554544201206732-64-----------------------------54799999877765
Q gi|254780552|r 160 TTR-------------VGLLTNPLQDRFGIPIRL-NF-----------------------------YEIEDLKTIVQRGA 196 (334)
Q Consensus 160 Tt~-------------~~~l~~~l~sR~~~~~~~-~~-----------------------------~~~~el~~il~~~~ 196 (334)
+|. +-++++|+.|||.+.|-+ +. |+.+++...+. .+
T Consensus 492 ANPv~GhYdR~ktl~eNi~msApimSRFDL~FiLlD~~nE~~D~~ia~hIld~h~~i~~~~~~~~~~~~e~vrkYi~-yA 570 (764)
T KOG0480 492 ANPVGGHYDRKKTLRENINMSAPIMSRFDLFFILLDDCNEVVDYAIARHILDLHRGIDDATERVCVYTLEQVRKYIR-YA 570 (764)
T ss_pred CCCCCCCCCCCCCHHHHCCCCCHHHHHHCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH-HH
T ss_conf 27767745533006652277804542222799993578667779999999987436211023256664999999999-98
Q ss_pred HHCCCHHHHHHHHHHHCC-------C-CC----CHHHHHHHHHHHHH----HHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 412101111111233202-------2-10----15678877754333----45541588642778787654210
Q gi|254780552|r 197 KLTGLAVTDEAACEIAMR-------S-RG----TPRIAGRLLRRVRD----FAEVAHAKTITREIADAALLRLA 254 (334)
Q Consensus 197 ~~~~i~~~~~al~~ia~~-------s-~G----d~R~AlnlLe~v~d----~a~~~~~~~i~~~~~~~~l~~~~ 254 (334)
....=.++.+|-..|.+. + .| +-|...+-||.... .|.++-.+.++.++++++..++.
T Consensus 571 R~~~P~ls~ea~~~lve~Y~~lR~~~~~~~~~~s~~ITvRqLESlIRLsEA~Ar~~~~devt~~~v~ea~eLlk 644 (764)
T KOG0480 571 RNFKPKLSKEASEMLVEKYKGLRQRDAQGNNRSSYRITVRQLESLIRLSEARARVECRDEVTKEDVEEAVELLK 644 (764)
T ss_pred HHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 75375324899999999999987741025676666506999898999999998633242326999999999987
No 207
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=98.86 E-value=2.6e-07 Score=64.26 Aligned_cols=169 Identities=25% Similarity=0.382 Sum_probs=107.7
Q ss_pred CEEEECCCCCCHHHHHHHHHHHC--CCCCCCCCCCCCCCH---HHHH----HHHHHH-----------HCCCHHHHHHHH
Q ss_conf 07997378855778999999861--898531257644334---6766----666641-----------016378887576
Q gi|254780552|r 56 HVLFVGPPGLGKTTLAQVVAREL--GVNFRSTSGPVIAKA---GDLA----ALLTNL-----------EDRDVLFIDEIH 115 (334)
Q Consensus 56 h~Lf~GPpG~GKTtlA~iiA~~l--~~~~~~~s~~~~~~~---~dl~----~~~~~~-----------~~~~vlfiDEih 115 (334)
++++.|-|||||--+||.+-+.. .-+|+.+|...+.+. .++. +.++.+ ..+..||+|||-
T Consensus 338 pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~A~gGtlFldeIg 417 (606)
T COG3284 338 PVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQADGGTLFLDEIG 417 (606)
T ss_pred CEEECCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHCCCCCCCCCCHHCCCCCCCEECCCCCCHHHHHH
T ss_conf 76853876556899999998536556983799850344776467774457656433001066554101578760898761
Q ss_pred HCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCCC-------C-------------C-CHHHHHCC
Q ss_conf 1698999999998634751002567876520004667400552045543-------3-------------5-54544201
Q gi|254780552|r 116 RLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVG-------L-------------L-TNPLQDRF 174 (334)
Q Consensus 116 rl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~~-------~-------------l-~~~l~sR~ 174 (334)
.++-..|..||.+++++.|+= ++.. + .+++ +.+|.||++.- . | .||||.|-
T Consensus 418 d~p~~~Qs~LLrVl~e~~v~p-~g~~---~-~~vd---irvi~ath~dl~~lv~~g~fredLyyrL~~~~i~lP~lr~R~ 489 (606)
T COG3284 418 DMPLALQSRLLRVLQEGVVTP-LGGT---R-IKVD---IRVIAATHRDLAQLVEQGRFREDLYYRLNAFVITLPPLRERS 489 (606)
T ss_pred HCHHHHHHHHHHHHHHCCEEC-CCCC---C-EEEE---EEEEECCCCCHHHHHHCCCCHHHHHHHHCCEEECCCCHHCCC
T ss_conf 141899999999986182523-5885---2-1577---999834675799998759714878887447155068611046
Q ss_pred CCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHH
Q ss_conf 20673264547999998777654121011111112332-02210156788777543334554158864277
Q gi|254780552|r 175 GIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIA-MRSRGTPRIAGRLLRRVRDFAEVAHAKTITRE 244 (334)
Q Consensus 175 ~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia-~~s~Gd~R~AlnlLe~v~d~a~~~~~~~i~~~ 244 (334)
. ....|..++++... ..++++++++..|- -+=-|+.|-..|.++++. ..-.++.|...
T Consensus 490 d--------~~~~l~~~~~~~~~-~~~~l~~~~~~~l~~~~WPGNirel~~v~~~~~---~l~~~g~~~~~ 548 (606)
T COG3284 490 D--------RIPLLDRILKREND-WRLQLDDDALARLLAYRWPGNIRELDNVIERLA---ALSDGGRIRVS 548 (606)
T ss_pred C--------CHHHHHHHHHHCCC-CCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHH---HCCCCCEEECC
T ss_conf 6--------57899999987268-775689999999985789982899999999998---70799735714
No 208
>KOG0741 consensus
Probab=98.83 E-value=5.9e-08 Score=68.15 Aligned_cols=93 Identities=27% Similarity=0.446 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHH-CCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCC-C------CCHHHHHHHHHHH-H
Q ss_conf 9999999999998661-4677670799737885577899999986189853125764-4------3346766666641-0
Q gi|254780552|r 34 VEACSNLKVFIEAAKA-RAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPV-I------AKAGDLAALLTNL-E 104 (334)
Q Consensus 34 ~~~~~~l~~~i~a~~~-~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~~~-~------~~~~dl~~~~~~~-~ 104 (334)
.++.+.-+.+++..+. ...++.++||+||||+|||+||--+|...+.+|+.+-.|. + .++.-+..++..+ +
T Consensus 517 ~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYk 596 (744)
T KOG0741 517 TRILDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYK 596 (744)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECHHHHCCCCHHHHHHHHHHHHHHHHC
T ss_conf 78876688999986334667635899866998876889999975279984797377870374667889999998887633
Q ss_pred -CCCHHHHHHHHH----------CCHHHHHHHH
Q ss_conf -163788875761----------6989999999
Q gi|254780552|r 105 -DRDVLFIDEIHR----------LSIIVEEILY 126 (334)
Q Consensus 105 -~~~vlfiDEihr----------l~~~~q~~Ll 126 (334)
+-.|+.+|+|.| |+.....+|+
T Consensus 597 S~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~ 629 (744)
T KOG0741 597 SPLSIIVVDDIERLLDYVPIGPRFSNLVLQALL 629 (744)
T ss_pred CCCEEEEECCHHHHHCCCCCCCCHHHHHHHHHH
T ss_conf 865089981556562002468403579999999
No 209
>PRK08116 hypothetical protein; Validated
Probab=98.81 E-value=1.4e-08 Score=71.90 Aligned_cols=110 Identities=26% Similarity=0.404 Sum_probs=64.9
Q ss_pred CCCCHHHHC---CHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHC---CCCCCCCCCCCC-CCHH-
Q ss_conf 789877823---97999999999999866146776707997378855778999999861---898531257644-3346-
Q gi|254780552|r 23 RPRTLEEFT---GQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL---GVNFRSTSGPVI-AKAG- 94 (334)
Q Consensus 23 RP~~l~dvi---GQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l---~~~~~~~s~~~~-~~~~- 94 (334)
+-.+|+.+. |++.+...-+.+.+.....+..-..++||||||||||-||-+||+++ |.....++.+.+ ....
T Consensus 74 ~~~tFeN~~~~~~~~~a~~~a~~Y~~~f~~~~~~~~GLll~G~~GtGKThLa~aIa~~l~~~g~~V~~~~~~~ll~~lk~ 153 (262)
T PRK08116 74 RNSTFENWLFRKGSEKAYKVAVKYVKKFEEMKKESVGLLLWGSPGNGKTYLAAAIANELIEKGVPVVFVNVPELLNRIKS 153 (262)
T ss_pred HHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHH
T ss_conf 81922255689525999999999999898736468618998989998999999999999987993999889999999999
Q ss_pred --------HHHHHHHHHHCCCHHHHHHHH--HCCHHHHHHHHHHHHCC
Q ss_conf --------766666641016378887576--16989999999986347
Q gi|254780552|r 95 --------DLAALLTNLEDRDVLFIDEIH--RLSIIVEEILYPAMEDF 132 (334)
Q Consensus 95 --------dl~~~~~~~~~~~vlfiDEih--rl~~~~q~~Ll~~mE~~ 132 (334)
+...++..+..-++|+||++- ..+.-.++.|+..+..+
T Consensus 154 ~~~~~~~~~~~e~l~~l~~~dLLIiDDlG~e~~t~w~~e~lf~IIn~R 201 (262)
T PRK08116 154 TYNSEGKEDENEIIRALDNADLLILDDLGAEKDTEWVREKLYNIIDSR 201 (262)
T ss_pred HHHCCCCHHHHHHHHHHHCCCEEEEEHHCCCCCCHHHHHHHHHHHHHH
T ss_conf 986356101999999861299899832214569878999999999999
No 210
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.78 E-value=3.1e-07 Score=63.74 Aligned_cols=178 Identities=25% Similarity=0.259 Sum_probs=110.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCC---CCCCCCCCCCH-------HH-------------------HHHHHHHHHCCC
Q ss_conf 79973788557789999998618985---31257644334-------67-------------------666666410163
Q gi|254780552|r 57 VLFVGPPGLGKTTLAQVVARELGVNF---RSTSGPVIAKA-------GD-------------------LAALLTNLEDRD 107 (334)
Q Consensus 57 ~Lf~GPpG~GKTtlA~iiA~~l~~~~---~~~s~~~~~~~-------~d-------------------l~~~~~~~~~~~ 107 (334)
+..+|+-|+|||.+.|++...++-+- +.+.++.++.. .| +.+.+...+++-
T Consensus 54 ~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~v 133 (269)
T COG3267 54 LAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRPV 133 (269)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCE
T ss_conf 99974477763699999998557885179983576301788999999984058320068899999999999998178873
Q ss_pred HHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCCCCCC----HHHHHCCCCEEECCCC
Q ss_conf 788875761698999999998634751002567876520004667400552045543355----4544201206732645
Q gi|254780552|r 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT----NPLQDRFGIPIRLNFY 183 (334)
Q Consensus 108 vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~~~l~----~~l~sR~~~~~~~~~~ 183 (334)
++++||.|-++-.+.++|.-.++- . .... +-. ...+||-++=.+.+- ..+.-||.+.+.+.|+
T Consensus 134 ~l~vdEah~L~~~~le~Lrll~nl-~------~~~~-~~l-----~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~ 200 (269)
T COG3267 134 VLMVDEAHDLNDSALEALRLLTNL-E------EDSS-KLL-----SIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPL 200 (269)
T ss_pred EEEEHHHHHHCHHHHHHHHHHHHH-C------CCCC-CCE-----EEEECCCCCCCHHHCHHHHHHHHHEEEEEEECCCC
T ss_conf 785016766175489999998862-0------3466-721-----14550780114354428898543167789953886
Q ss_pred CHHHHHHHHHHHHHHCC---CHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 47999998777654121---01111111233202210156788777543334554158864277878
Q gi|254780552|r 184 EIEDLKTIVQRGAKLTG---LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247 (334)
Q Consensus 184 ~~~el~~il~~~~~~~~---i~~~~~al~~ia~~s~Gd~R~AlnlLe~v~d~a~~~~~~~i~~~~~~ 247 (334)
+.++....++...+.-+ =-++++++..|+..++|-||.-.|++-.+.+.|...+...|+...++
T Consensus 201 ~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~~Al~~a~~a~~~~v~~a~~~ 267 (269)
T COG3267 201 TEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLATLALDAAYSAGEDGVSEAEIK 267 (269)
T ss_pred CHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHCC
T ss_conf 7478999999998505899666770578999998525548999988999999987399751256513
No 211
>PHA02244 ATPase-like protein
Probab=98.76 E-value=2.2e-08 Score=70.77 Aligned_cols=117 Identities=24% Similarity=0.387 Sum_probs=76.4
Q ss_pred CEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHH------------HHHHHHCCCHHHHHHHHHCCHHHHH
Q ss_conf 0799737885577899999986189853125764433467666------------6664101637888757616989999
Q gi|254780552|r 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAA------------LLTNLEDRDVLFIDEIHRLSIIVEE 123 (334)
Q Consensus 56 h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~~~~~~~~dl~~------------~~~~~~~~~vlfiDEihrl~~~~q~ 123 (334)
++.+|||.|+|||++|.-||+.|+.+|...++ +...-.+.+ ....++.|.++|+|||+.-++.+.-
T Consensus 121 pV~L~G~AGsGKt~~A~qIA~aLdl~FYf~gA--I~~ef~L~Gf~DAnG~yh~T~f~kaFk~GGLfLlDEiDASnP~aL~ 198 (383)
T PHA02244 121 PVFLKGGAGSGKNHIAEQIAEALDLDFYFMNA--IMDEFELKGFIDANGKFHETPFYEAFKKGGLFFIDEIDASIPEALI 198 (383)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCCEECHH--HHHHHHCCCEECCCCCEECCHHHHHHHCCCEEEEEHHCCCCHHHHH
T ss_conf 56997588886348999999985888244132--3013430125648996726389999861887997320044879999
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCC-----------CCCCHHHHHCCCCEEECCC
Q ss_conf 9999863475100256787652000466740055204554-----------3355454420120673264
Q gi|254780552|r 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV-----------GLLTNPLQDRFGIPIRLNF 182 (334)
Q Consensus 124 ~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~-----------~~l~~~l~sR~~~~~~~~~ 182 (334)
+|=.++-++.... |..+ +. .-+.|.+|+|-|-. ++|..+-++||.. +.+.+
T Consensus 199 ~lNaALAN~fm~F-----PdG~-V~-~HedFr~IAagNT~G~Gad~~YVGRnqLD~ATLDRFv~-ie~~Y 260 (383)
T PHA02244 199 IINSAIANKFFDF-----ADER-VT-AHEDFRVISAGNTLGKGADHIYVARNKIDGATLDRFAP-IEFDY 260 (383)
T ss_pred HHHHHHHCCCCCC-----CCCH-HH-CCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHEEE-CCCCC
T ss_conf 9989986476347-----6421-10-05763899724656778872211445456464620364-45683
No 212
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.70 E-value=1.8e-07 Score=65.25 Aligned_cols=140 Identities=19% Similarity=0.190 Sum_probs=81.8
Q ss_pred HHCCHHHHHHHHHHHHHHH------------------HHCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 8239799999999999986------------------6146776707997378855778999999861898531257644
Q gi|254780552|r 29 EFTGQVEACSNLKVFIEAA------------------KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 (334)
Q Consensus 29 dviGQ~~~~~~l~~~i~a~------------------~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~~~~ 90 (334)
.+.|.+++|+.+-..+-.+ +.||. -|+|+.|-|||+|.-+.+-+.+-.-.. +.+||..-
T Consensus 452 SI~~~~dvKkgillqLFGg~~k~~~~~~~~~~~~~~~~~Rgd--IniLl~GDPgtaKSQlL~yv~~iaPRg-vytsGkgs 528 (916)
T PTZ00111 452 SIKARNNVKIGLLCQLFSCNANSSDNNKSPDACYKVDNFRGI--INVLLCGDPGTAKSQLLHYTHLLSPRS-IYTSGKSS 528 (916)
T ss_pred HHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC--EEEEEECCCCCCHHHHHHHHHHHCCCE-EEECCCCC
T ss_conf 211522699999999848875456778776544444443454--059995799601899999999728742-67459865
Q ss_pred CCH--------HH-----H---HHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCC---CCCCCCCCEEECCC
Q ss_conf 334--------67-----6---66666410163788875761698999999998634751002---56787652000466
Q gi|254780552|r 91 AKA--------GD-----L---AALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM---VGEGPSARSVKINL 151 (334)
Q Consensus 91 ~~~--------~d-----l---~~~~~~~~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~---~~~~~~a~~~~~~~ 151 (334)
+.+ .| . .+.+ -+..+.|..|||.+.++.....+|..+||...|.|- +...-+|++
T Consensus 529 SavGLTA~v~~~d~~tg~~~LEaGAL-VLaD~GvccIDEFDKM~~~~rs~lhEaMEQQtvSIAKAGI~~tLnARt----- 602 (916)
T PTZ00111 529 SSVGLTASIKFNESDNGRAMIQPGAV-VLANGGVCCIDELDKCHNESRLSLYEVMEQQTVTIAKAGIVATLKAET----- 602 (916)
T ss_pred CCCCCEEEEEECCCCCCCEEEECCCE-EECCCCEEEEEHHHCCCHHHHHHHHHHHHHHHHHHHHCCEEEEECHHH-----
T ss_conf 42264689983268878689854808-972798799622203685678899998866312353235045412034-----
Q ss_pred CCCEEEECCC-------------CCCCCCHHHHHCCCCEEEC
Q ss_conf 7400552045-------------5433554544201206732
Q gi|254780552|r 152 SRFTLIAATT-------------RVGLLTNPLQDRFGIPIRL 180 (334)
Q Consensus 152 ~~f~lI~ATt-------------~~~~l~~~l~sR~~~~~~~ 180 (334)
.+++|.| ++-.+++||+|||.+++-+
T Consensus 603 ---SvLAaANP~~gry~~~~~v~enI~lpp~LLSRFDLIfl~ 641 (916)
T PTZ00111 603 ---AILASCNPINSRYNKNKAVIENINISPSLFTRFDLIYLV 641 (916)
T ss_pred ---HHHHHCCCCCCCCCCCCCHHHHCCCCCHHHHHHHEEEEE
T ss_conf ---565532865565787867676457994033122046775
No 213
>PRK08181 transposase; Validated
Probab=98.65 E-value=2.8e-08 Score=70.14 Aligned_cols=78 Identities=23% Similarity=0.387 Sum_probs=50.5
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHC---CCCCCCCCCCCCC----C---HHHHHHHHHHHHCCCHHHHHHHH--HCCHHHH
Q ss_conf 707997378855778999999861---8985312576443----3---46766666641016378887576--1698999
Q gi|254780552|r 55 DHVLFVGPPGLGKTTLAQVVAREL---GVNFRSTSGPVIA----K---AGDLAALLTNLEDRDVLFIDEIH--RLSIIVE 122 (334)
Q Consensus 55 ~h~Lf~GPpG~GKTtlA~iiA~~l---~~~~~~~s~~~~~----~---~~dl~~~~~~~~~~~vlfiDEih--rl~~~~q 122 (334)
.++||.||||||||-+|-.++.+. |.....++++.+- . -+.+...+..+..-++|+|||+- .+++...
T Consensus 107 ~Nvil~Gp~GtGKThLA~Alg~~A~~~G~~V~f~~~~~L~~~L~~a~~~~~~~~~~~~l~~~dLLIiDe~G~~~~~~~~~ 186 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLDKFDLLILDDLAYVTKDQAET 186 (269)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHCCCEEEEHHCCCCCCCHHHH
T ss_conf 70899899998788999999999998799399978999999999977558399999997444601220105667998999
Q ss_pred HHHHHHHHCC
Q ss_conf 9999986347
Q gi|254780552|r 123 EILYPAMEDF 132 (334)
Q Consensus 123 ~~Ll~~mE~~ 132 (334)
+.|+..++++
T Consensus 187 ~~lf~lI~~R 196 (269)
T PRK08181 187 SVLFELISAR 196 (269)
T ss_pred HHHHHHHHHH
T ss_conf 9999999998
No 214
>PRK06526 transposase; Provisional
Probab=98.64 E-value=2.5e-08 Score=70.43 Aligned_cols=78 Identities=26% Similarity=0.419 Sum_probs=50.7
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHC---CCCCCCCCCCCCC-------CHHHHHHHHHHHHCCCHHHHHHHH--HCCHHHH
Q ss_conf 707997378855778999999861---8985312576443-------346766666641016378887576--1698999
Q gi|254780552|r 55 DHVLFVGPPGLGKTTLAQVVAREL---GVNFRSTSGPVIA-------KAGDLAALLTNLEDRDVLFIDEIH--RLSIIVE 122 (334)
Q Consensus 55 ~h~Lf~GPpG~GKTtlA~iiA~~l---~~~~~~~s~~~~~-------~~~dl~~~~~~~~~~~vlfiDEih--rl~~~~q 122 (334)
.+++|.||||||||-+|-.++.+. |.....+.++.+- ..+.+...+..+..-++|+|||+- .+++...
T Consensus 99 ~Nvil~G~~GtGKThLA~Alg~~A~~~G~~v~f~~~~~L~~~L~~a~~~g~~~~~~~~l~~~dLLIiDe~g~~~~~~~~a 178 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQDELVKLGRIPLLIVDEVGYIPFEAEAA 178 (254)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHCCCEEEEECCCCCCCCHHHH
T ss_conf 87899899998689999999999998699679987799999999988558099999985136877650213644788999
Q ss_pred HHHHHHHHCC
Q ss_conf 9999986347
Q gi|254780552|r 123 EILYPAMEDF 132 (334)
Q Consensus 123 ~~Ll~~mE~~ 132 (334)
+.|+..++++
T Consensus 179 ~~lf~li~~R 188 (254)
T PRK06526 179 NLFFQLVSSR 188 (254)
T ss_pred HHHHHHHHHH
T ss_conf 9999999999
No 215
>pfam01695 IstB IstB-like ATP binding protein. This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.
Probab=98.62 E-value=3.4e-08 Score=69.59 Aligned_cols=78 Identities=33% Similarity=0.568 Sum_probs=51.7
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHC---CCCCCCCCCCCCC-CH------HHHHHHHHHHHCCCHHHHHHHH--HCCHHHH
Q ss_conf 707997378855778999999861---8985312576443-34------6766666641016378887576--1698999
Q gi|254780552|r 55 DHVLFVGPPGLGKTTLAQVVAREL---GVNFRSTSGPVIA-KA------GDLAALLTNLEDRDVLFIDEIH--RLSIIVE 122 (334)
Q Consensus 55 ~h~Lf~GPpG~GKTtlA~iiA~~l---~~~~~~~s~~~~~-~~------~dl~~~~~~~~~~~vlfiDEih--rl~~~~q 122 (334)
.+++|+||||||||-+|-.+++++ |.....++.+.+- .. +.....+..+..-++|+|||+- .++....
T Consensus 48 ~Nlll~G~~GtGKThLA~Ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~l~~~~~~dlLIiDDlG~~~~s~~~~ 127 (178)
T pfam01695 48 ENLLLLGPPGVGKTHLACALGHQACRAGYSVLFTRTPDLVEQLKRARGDGRLARTLQRLAKADLLILDDIGYLPLSQEAA 127 (178)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHCCCHHHHHHHHHCCCEEEEEHHCCCCCCHHHH
T ss_conf 76899899998789999999999998698599996167999999875267499999996258978872001656898999
Q ss_pred HHHHHHHHCC
Q ss_conf 9999986347
Q gi|254780552|r 123 EILYPAMEDF 132 (334)
Q Consensus 123 ~~Ll~~mE~~ 132 (334)
+.|+..++++
T Consensus 128 ~~lf~li~~R 137 (178)
T pfam01695 128 HLLFELISDR 137 (178)
T ss_pred HHHHHHHHHH
T ss_conf 9999999999
No 216
>pfam08298 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.62 E-value=1.1e-06 Score=60.35 Aligned_cols=57 Identities=25% Similarity=0.385 Sum_probs=42.5
Q ss_pred CCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCC-CEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 789877823979999999999998661467767-079973788557789999998618
Q gi|254780552|r 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALD-HVLFVGPPGLGKTTLAQVVARELG 79 (334)
Q Consensus 23 RP~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~-h~Lf~GPpG~GKTtlA~iiA~~l~ 79 (334)
|=..|+||.|.++.+..+-.++.++-.+.+.-. -++|.||+|.||+|+|+.+-+.|.
T Consensus 53 rY~~F~dffGme~~i~~iV~~~ksAA~g~e~~kqIllL~GPVGsGKSsl~e~LK~glE 110 (358)
T pfam08298 53 RYPAFADFFGMEETIERIVNYFRHAAQGLEERKQILYLLGPVGGGKSSLAERLKKLLE 110 (358)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 2554232001599999999999999723672105899977898775899999998720
No 217
>KOG0482 consensus
Probab=98.59 E-value=3.9e-06 Score=57.02 Aligned_cols=219 Identities=21% Similarity=0.243 Sum_probs=120.8
Q ss_pred HHHCCHHHHHHHHHHHHHHHH---------HCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 782397999999999999866---------14677670799737885577899999986189853125764433467666
Q gi|254780552|r 28 EEFTGQVEACSNLKVFIEAAK---------ARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAA 98 (334)
Q Consensus 28 ~dviGQ~~~~~~l~~~i~a~~---------~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~~~~~~~~dl~~ 98 (334)
-|+.|++++|+.|-.++--+- .||. -|+++.|-||+.|.-|-.-|.+---.. +.+.|-.-++++=-++
T Consensus 342 PEIyGheDVKKaLLLlLVGgvd~~~~dGMKIRGd--INicLmGDPGVAKSQLLkyi~rlapRg-vYTTGrGSSGVGLTAA 418 (721)
T KOG0482 342 PEIYGHEDVKKALLLLLVGGVDKSPGDGMKIRGD--INICLMGDPGVAKSQLLKYISRLAPRG-VYTTGRGSSGVGLTAA 418 (721)
T ss_pred HHHCCCHHHHHHHHHHHHCCCCCCCCCCCEEECC--EEEEECCCCCHHHHHHHHHHHHCCCCC-CEECCCCCCCCCCCHH
T ss_conf 0630616799999999517888888887666253--469963897133899999998507665-0303888776551112
Q ss_pred HH--------------HHHHCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCC---CCCCCCCCEEECCCCCCEEEECCC
Q ss_conf 66--------------6410163788875761698999999998634751002---567876520004667400552045
Q gi|254780552|r 99 LL--------------TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLM---VGEGPSARSVKINLSRFTLIAATT 161 (334)
Q Consensus 99 ~~--------------~~~~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~---~~~~~~a~~~~~~~~~f~lI~ATt 161 (334)
++ .-+..+.|-.|||.+.+...---+.-.+||.-.|.|- |.-.-+|++ ..++|-|
T Consensus 419 VmkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~DRtAIHEVMEQQTISIaKAGI~TtLNAR~--------sILaAAN 490 (721)
T KOG0482 419 VMKDPVTGEMVLEGGALVLADGGICCIDEFDKMDESDRTAIHEVMEQQTISIAKAGINTTLNART--------SILAAAN 490 (721)
T ss_pred HHCCCCCCEEEECCCEEEECCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH--------HHHHHCC
T ss_conf 11377777068606638971696576123332303335799999876544563420100050567--------7665447
Q ss_pred CC-------------CCCCHHHHHCCCCEEECCC-CC---HHHHHHHHHH-------------------------HHHHC
Q ss_conf 54-------------3355454420120673264-54---7999998777-------------------------65412
Q gi|254780552|r 162 RV-------------GLLTNPLQDRFGIPIRLNF-YE---IEDLKTIVQR-------------------------GAKLT 199 (334)
Q Consensus 162 ~~-------------~~l~~~l~sR~~~~~~~~~-~~---~~el~~il~~-------------------------~~~~~ 199 (334)
.. -.|+++|+|||.+.+-+.- .+ ...|.+.+-. .|+..
T Consensus 491 PayGRYnprrs~e~NI~LPaALLSRFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~~mR~yI~~ak~~ 570 (721)
T KOG0482 491 PAYGRYNPRRSPEQNINLPAALLSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPNLMRRYISLAKRK 570 (721)
T ss_pred CCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHC
T ss_conf 43346686669667369848898754546421268764334899877675540377997568878979999999997543
Q ss_pred CCHHHHHHHHHHH----------CCC----CCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 1011111112332----------022----101567887775433345541588642778787654210000
Q gi|254780552|r 200 GLAVTDEAACEIA----------MRS----RGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLAIDK 257 (334)
Q Consensus 200 ~i~~~~~al~~ia----------~~s----~Gd~R~AlnlLe~v~d~a~~~~~~~i~~~~~~~~l~~~~id~ 257 (334)
+=-+.++.-++|. +.+ --+||..|.+|...-..|.+.-...+..++|.+++.++.+-+
T Consensus 571 ~P~vp~~l~dyi~~AYv~~Rrea~~~~~~t~ttpRtLL~IlRls~AlarLRls~~V~~~DV~EALRLme~sK 642 (721)
T KOG0482 571 NPVVPEALADYITGAYVELRREARSSKDFTYTTPRTLLGILRLSTALARLRLSDSVEEDDVNEALRLMEMSK 642 (721)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 898987999899999999988751368976457899999999999988764002133442999999998511
No 218
>KOG2228 consensus
Probab=98.59 E-value=7.2e-06 Score=55.41 Aligned_cols=260 Identities=23% Similarity=0.320 Sum_probs=119.5
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHH-HHHH--HHCCCCCC--CCCCCCCC-CH--H----------
Q ss_conf 799999999999986614677670799737885577899-9999--86189853--12576443-34--6----------
Q gi|254780552|r 33 QVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLA-QVVA--RELGVNFR--STSGPVIA-KA--G---------- 94 (334)
Q Consensus 33 Q~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA-~iiA--~~l~~~~~--~~s~~~~~-~~--~---------- 94 (334)
|.|+-.-++..+ ..|+ ..++++.||.|.|||.+. ..++ ++.|-+|. .++|..-. +. .
T Consensus 33 ~~~l~~~lkqt~----~~gE-snsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~al~~I~rql~~e~ 107 (408)
T KOG2228 33 QKHLSELLKQTI----LHGE-SNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIALKGITRQLALEL 107 (408)
T ss_pred HHHHHHHHHHHH----HHCC-CCCEEEECCCCCCCEEEEHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999----8447-77269981477881674077876677517727999878500155899999999999997
Q ss_pred ------------HHHHHHHHHHC------CCHHHH-HHHHHCCHH-HHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCC
Q ss_conf ------------76666664101------637888-757616989-9999999863475100256787652000466740
Q gi|254780552|r 95 ------------DLAALLTNLED------RDVLFI-DEIHRLSII-VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRF 154 (334)
Q Consensus 95 ------------dl~~~~~~~~~------~~vlfi-DEihrl~~~-~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f 154 (334)
.+..++..++. ..|+|| ||++-|... .|-.||...+ + ..+++ .|.
T Consensus 108 ~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfD-----i----sqs~r------~Pi 172 (408)
T KOG2228 108 NRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFD-----I----SQSAR------API 172 (408)
T ss_pred HHHHEEECCCCHHHHHHHHHHHCCCCCCCCEEEEEEEHHHCCCCCHHHHHHHHHHH-----H----HHHCC------CCE
T ss_conf 53212422533469999998733787788519998310002464035678999988-----8----76247------986
Q ss_pred EEEECCCCCCC---CCHHHHHCCCC--EEECCCCCHHHHHHHHHHHHHHCCCHHH-HHHHHHHHCCC---CCCHHHHHHH
Q ss_conf 05520455433---55454420120--6732645479999987776541210111-11112332022---1015678877
Q gi|254780552|r 155 TLIAATTRVGL---LTNPLQDRFGI--PIRLNFYEIEDLKTIVQRGAKLTGLAVT-DEAACEIAMRS---RGTPRIAGRL 225 (334)
Q Consensus 155 ~lI~ATt~~~~---l~~~l~sR~~~--~~~~~~~~~~el~~il~~~~~~~~i~~~-~~al~~ia~~s---~Gd~R~Alnl 225 (334)
++||-||+... +-.-..|||.. ++-+.+.+.++.+.+++... .+.-+ .+.....-+.- =.|+|.+-..
T Consensus 173 ciig~Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll---~v~~e~~~~~~~wn~~~~~~L~d~~sl~k~ 249 (408)
T KOG2228 173 CIIGVTTRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL---SVPAEFSDFAEKWNRSVQEVLSDHRSLSKN 249 (408)
T ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHH---CCCCCCCCHHHHHHHHHHHHHCCHHHHHHH
T ss_conf 99985032338999999987433552462269888588999999973---577568608888776565764024557788
Q ss_pred HHHHHHHHH------HHCCCCCCHHHHHHHHHHHHCCCC-----HHHHHHHHHHHHHH---HHHCCCCCHHHHHHHHH-C
Q ss_conf 754333455------415886427787876542100000-----04677688999999---75186620699999982-8
Q gi|254780552|r 226 LRRVRDFAE------VAHAKTITREIADAALLRLAIDKM-----GFDQLDLRYLTMIA---RNFGGGPVGIETISAGL-S 290 (334)
Q Consensus 226 Le~v~d~a~------~~~~~~i~~~~~~~~l~~~~id~~-----Gl~~~d~~~L~~l~---~~~~~g~~~~~~isA~~-k 290 (334)
++...++-. +...--+|.+..-++..+.+.|+. |+.-.+...+-... .....++.+++...+-- |
T Consensus 250 l~~~~~~l~~~l~~~vas~p~~ta~~~~~v~~~ys~d~Kie~l~gLSvLEL~LII~~~r~~~~ae~~sfNF~lvY~EfrK 329 (408)
T KOG2228 250 LRSLHDLLKNALNRLVASHPLMTAEDLAEVSRQYSVDPKIELLSGLSVLELYLIICMKRETLIAELNSFNFNLVYAEFRK 329 (408)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 88756888755555540574012777899999846480777863736999999999899888875488649999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
Q ss_conf 74567467899999983430587189999998886648
Q gi|254780552|r 291 EPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQHLG 328 (334)
Q Consensus 291 s~RgS~~daa~~yL~r~g~~~~~prgRrL~~~a~EdiG 328 (334)
.+. ++-...++| +|-.+..|||+++
T Consensus 330 ~ik-si~hTs~~~------------~k~vvlnAfEhL~ 354 (408)
T KOG2228 330 FIK-SIAHTSELW------------AKTVVLNAFEHLR 354 (408)
T ss_pred HHH-HHHHHHHHH------------HHHHHHHHHHHHH
T ss_conf 999-876689998------------6789999973213
No 219
>pfam00931 NB-ARC NB-ARC domain.
Probab=98.58 E-value=1.1e-05 Score=54.21 Aligned_cols=118 Identities=19% Similarity=0.192 Sum_probs=63.5
Q ss_pred EECCCCCCCCCHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCHH---HHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 52045543355454420120673264547999998777654121011---111112332022101567887775433345
Q gi|254780552|r 157 IAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAV---TDEAACEIAMRSRGTPRIAGRLLRRVRDFA 233 (334)
Q Consensus 157 I~ATt~~~~l~~~l~sR~~~~~~~~~~~~~el~~il~~~~~~~~i~~---~~~al~~ia~~s~Gd~R~AlnlLe~v~d~a 233 (334)
|.-||+...+...+.... ..+++++++.++-.+++.+.+-...... -++....|++.++|-| .|+..+-.
T Consensus 131 IIvTTR~~~V~~~~~~~~-~~~~l~~L~~~es~~Lf~~~a~~~~~~~~~~l~~~~~~Iv~~C~GlP-Lai~~lg~----- 203 (285)
T pfam00931 131 VIVTTRSESVAGRMGGTS-KPHEVESLEPEESWELFSNKVFEKELPPCPELEEVAKEIVEKCKGLP-LALKVLGG----- 203 (285)
T ss_pred EEEECCCHHHHHHCCCCC-CEEECCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCH-HHHHHHHH-----
T ss_conf 998557589998737888-34761689879999999998468989997679999999999858994-99999999-----
Q ss_pred HHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf 541588642778787654210000004677688999999751866206999
Q gi|254780552|r 234 EVAHAKTITREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIET 284 (334)
Q Consensus 234 ~~~~~~~i~~~~~~~~l~~~~id~~Gl~~~d~~~L~~l~~~~~~g~~~~~~ 284 (334)
.+.+. -+.+.|+.+++.+.-.... ...+..+...+.-.|+.=|.++..
T Consensus 204 ~L~~k--~~~~~W~~~l~~l~~~~~~-~~~~~~i~~~l~~sY~~Lp~~lk~ 251 (285)
T pfam00931 204 LLAFK--STVQEWEHVLEQLNNELAG-RDGLNEVLSILSLSYDNLPMHLKR 251 (285)
T ss_pred HHCCC--CCHHHHHHHHHHHHCCCCC-CCCHHHHHHHHHHHHHCCCHHHHH
T ss_conf 97179--9899999999975113644-764889999999998379999999
No 220
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.54 E-value=1.6e-07 Score=65.51 Aligned_cols=95 Identities=23% Similarity=0.350 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHC---CCCCCCCCCCCCC-CHH--------HHHHHHH
Q ss_conf 999999999999866146776707997378855778999999861---8985312576443-346--------7666666
Q gi|254780552|r 34 VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL---GVNFRSTSGPVIA-KAG--------DLAALLT 101 (334)
Q Consensus 34 ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l---~~~~~~~s~~~~~-~~~--------dl~~~~~ 101 (334)
+.+....+.+++... ....+++|+||+|||||-||.+||+++ |.....++++.+- ... +....+.
T Consensus 166 ~~i~~~~~~fi~~F~---~~~~nLlf~G~~G~GKTfLa~~IA~ell~~g~sViy~ta~~L~~~l~~~~~~~~~~~~~~~~ 242 (330)
T PRK06835 166 ENILEKCLNFIKNFD---KNNENLLFYGNTGTGKTFLSNCIAKELLDRGKTVIYRTSDELIENLREIRFNNDNDAPELED 242 (330)
T ss_pred HHHHHHHHHHHHHCC---CCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf 999999999987247---88886698899999889999999999998799499962999999999975457644899999
Q ss_pred HHHCCCHHHHHHH--HHCCHHHHHHHHHHHHC
Q ss_conf 4101637888757--61698999999998634
Q gi|254780552|r 102 NLEDRDVLFIDEI--HRLSIIVEEILYPAMED 131 (334)
Q Consensus 102 ~~~~~~vlfiDEi--hrl~~~~q~~Ll~~mE~ 131 (334)
.+..-++|+||++ ...+.-..+.|+..+..
T Consensus 243 ~l~~~DLLIIDDLG~E~~t~~~~~~Lf~iIN~ 274 (330)
T PRK06835 243 LLINCDLLIIDDLGTESITEFSKTELFNLINK 274 (330)
T ss_pred HHHHCCEEEEECCCCCCCCHHHHHHHHHHHHH
T ss_conf 99618989972103455886899999999999
No 221
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D; InterPro: IPR011776 This entry represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (IPR011775 from INTERPRO), this subunit is not found in archaea.; GO: 0005524 ATP binding, 0016851 magnesium chelatase activity, 0015995 chlorophyll biosynthetic process.
Probab=98.53 E-value=1.7e-06 Score=59.16 Aligned_cols=134 Identities=29% Similarity=0.362 Sum_probs=84.6
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHCCCC-----CC---------------------CCCC-------------CCC----
Q ss_conf 6707997378855778999999861898-----53---------------------1257-------------644----
Q gi|254780552|r 54 LDHVLFVGPPGLGKTTLAQVVARELGVN-----FR---------------------STSG-------------PVI---- 90 (334)
Q Consensus 54 ~~h~Lf~GPpG~GKTtlA~iiA~~l~~~-----~~---------------------~~s~-------------~~~---- 90 (334)
+.-+.+-|=.|||||++|+.++..|... +. +-+| +..
T Consensus 17 lgGv~I~~r~Gtgk~al~ral~~~Lp~~~~~~g~~i~~~~PA~P~~W~~~~~ER~~~~~GlsD~~~~~~~~~~p~~~lP~ 96 (705)
T TIGR02031 17 LGGVAIRARAGTGKTALARALAEILPPIEELEGSIISNADPAEPDEWEDDLDERIEEEAGLSDSEVKVVIVKAPFVELPL 96 (705)
T ss_pred HCCEEEECCCCHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCEECCC
T ss_conf 05455416777388999999998588874326620147888887323445654233204776662204650564102589
Q ss_pred -------CCHHHHH------------HHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCC
Q ss_conf -------3346766------------666641016378887576169899999999863475100256787652000466
Q gi|254780552|r 91 -------AKAGDLA------------ALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINL 151 (334)
Q Consensus 91 -------~~~~dl~------------~~~~~~~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~ 151 (334)
-+--|+. ++|..+ ++.||+||++.++....-+.|+.+|++|.+.+ ==||-+. ...
T Consensus 97 ~vtedrL~G~iDve~sl~~G~~V~~~GlL~~A-~~gvlyvd~~~lld~~~~n~l~~AL~~G~~~v-EREGiS~----~~P 170 (705)
T TIGR02031 97 GVTEDRLLGGIDVEESLASGQRVLQPGLLDEA-NRGVLYVDSLNLLDDSLVNRLLDALDEGVVIV-EREGISV----VHP 170 (705)
T ss_pred CCCCCCCCCCCCCCCCCCCCEEEEECCCHHHC-CCCCEECCCHHHHHHHHHHHHHHHHHCCCEEE-EECCCCC----CCC
T ss_conf 87320302640020146878254407603116-89704315454110689999998865497688-8656563----047
Q ss_pred CCCEEEECCCCCC----CCCHHHHHCCCCEEECCCCCH-HHHHHHHHH
Q ss_conf 7400552045543----355454420120673264547-999998777
Q gi|254780552|r 152 SRFTLIAATTRVG----LLTNPLQDRFGIPIRLNFYEI-EDLKTIVQR 194 (334)
Q Consensus 152 ~~f~lI~ATt~~~----~l~~~l~sR~~~~~~~~~~~~-~el~~il~~ 194 (334)
.+|.|| ||.++. -++..|.||.+++..+..... +.-.+|+.+
T Consensus 171 a~f~Li-atydp~E~~~~lr~~L~DRla~~v~~~~~~~~~~R~~iv~~ 217 (705)
T TIGR02031 171 AKFVLI-ATYDPAEGDGALREHLLDRLALIVSLEEVASLEARVEIVRR 217 (705)
T ss_pred CCCEEE-EECCCCCCCCCCCHHHHHHHHHEECCHHCCCHHHHHHHHHH
T ss_conf 673036-63177778776620454034411051102578889999889
No 222
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.52 E-value=5.9e-06 Score=55.92 Aligned_cols=210 Identities=25% Similarity=0.336 Sum_probs=108.9
Q ss_pred CCEEEECCCCCCHHHHHHHHH------HHCCCCCCCCCCCCCCCHH-------HHHHHHH----------HHHCCCHHHH
Q ss_conf 707997378855778999999------8618985312576443346-------7666666----------4101637888
Q gi|254780552|r 55 DHVLFVGPPGLGKTTLAQVVA------RELGVNFRSTSGPVIAKAG-------DLAALLT----------NLEDRDVLFI 111 (334)
Q Consensus 55 ~h~Lf~GPpG~GKTtlA~iiA------~~l~~~~~~~s~~~~~~~~-------dl~~~~~----------~~~~~~vlfi 111 (334)
.+||+.||.|.||+-+||-|- +.+.-.|+++|...+.+-. -+.+.++ ....+..||+
T Consensus 209 ~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsadggmlfl 288 (531)
T COG4650 209 APILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSADGGMLFL 288 (531)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCEEEH
T ss_conf 97686468874366899999999988875378627886300047528899876400131463345544243377865756
Q ss_pred HHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCC-------CCCCHHHHHCCCCEEECCCCC
Q ss_conf 7576169899999999863475100256787652000466740055204554-------335545442012067326454
Q gi|254780552|r 112 DEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV-------GLLTNPLQDRFGIPIRLNFYE 184 (334)
Q Consensus 112 DEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~-------~~l~~~l~sR~~~~~~~~~~~ 184 (334)
|||-.+.-.-|..||.++|+-+..- .+.. +.--++|.||+-|-+- ++.-.-|--|..+- .|+.+.
T Consensus 289 deigelgadeqamllkaieekrf~p-fgsd------r~v~sdfqliagtvrdlrq~vaeg~fredl~arinlw-tf~lpg 360 (531)
T COG4650 289 DEIGELGADEQAMLLKAIEEKRFYP-FGSD------RQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLW-TFTLPG 360 (531)
T ss_pred HHHHHCCCCHHHHHHHHHHHHCCCC-CCCC------CCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHEE-EEECCC
T ss_conf 7433247527889999988712677-8874------0003106776411888999986361378788763113-540663
Q ss_pred ----HHHH----HHHHHHHHHHC--CCHHHHHHHH-HHHCCC------CCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf ----7999----99877765412--1011111112-332022------10156788777543334554158864277878
Q gi|254780552|r 185 ----IEDL----KTIVQRGAKLT--GLAVTDEAAC-EIAMRS------RGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247 (334)
Q Consensus 185 ----~~el----~~il~~~~~~~--~i~~~~~al~-~ia~~s------~Gd~R~AlnlLe~v~d~a~~~~~~~i~~~~~~ 247 (334)
.+++ ---+.|.+... .+-+.-+|.. +++-.. +|+.|..-. .+-..|.+...+.|+.+.++
T Consensus 361 l~qr~ediepnldyelerha~~~g~~vrfntearra~l~fa~spqa~w~gnfrelsa---svtrmatlad~grit~~~ve 437 (531)
T COG4650 361 LRQRQEDIEPNLDYELERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSA---SVTRMATLADSGRITLDVVE 437 (531)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHCCEEEEEHHHHHHHHHHCCCCHHHHCCCHHHHHH---HHHHHHHHHCCCCEEHHHHH
T ss_conf 115700069883478999888618635520798888997505830111266888768---99999887127830088789
Q ss_pred HHHHH----------------HHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 76542----------------10000004677688999999751
Q gi|254780552|r 248 AALLR----------------LAIDKMGFDQLDLRYLTMIARNF 275 (334)
Q Consensus 248 ~~l~~----------------~~id~~Gl~~~d~~~L~~l~~~~ 275 (334)
+-+.. ++.+...+|-.|+--|+....-.
T Consensus 438 ~ei~rlr~~w~~~~p~~l~~llg~~a~aldlfdrmqle~v~~vc 481 (531)
T COG4650 438 DEINRLRYNWQESRPSALTALLGAEAEALDLFDRMQLEHVIAIC 481 (531)
T ss_pred HHHHHHHHHHHHCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 99999998764138602330346652776578888899999998
No 223
>TIGR02173 cyt_kin_arch cytidylate kinase, putative; InterPro: IPR011892 Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by IPR003136 from INTERPRO.; GO: 0004127 cytidylate kinase activity, 0005524 ATP binding, 0006139 nucleobase nucleoside nucleotide and nucleic acid metabolic process.
Probab=98.51 E-value=6.8e-08 Score=67.79 Aligned_cols=28 Identities=43% Similarity=0.789 Sum_probs=24.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 7997378855778999999861898531
Q gi|254780552|r 57 VLFVGPPGLGKTTLAQVVARELGVNFRS 84 (334)
Q Consensus 57 ~Lf~GPpG~GKTtlA~iiA~~l~~~~~~ 84 (334)
+..+||||+||||+|+.||+.|++++++
T Consensus 3 I~ISGpPGSGktTvA~~lA~~Lsl~~iS 30 (173)
T TIGR02173 3 ITISGPPGSGKTTVAKILAEKLSLKLIS 30 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCEEC
T ss_conf 8873589686478999999863983120
No 224
>PRK09183 transposase/IS protein; Provisional
Probab=98.42 E-value=1.7e-07 Score=65.35 Aligned_cols=78 Identities=27% Similarity=0.473 Sum_probs=49.2
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHC---CCCCCCCCCCCCC----CH---HHHHHHHH-HHHCCCHHHHHHHH--HCCHHH
Q ss_conf 707997378855778999999861---8985312576443----34---67666666-41016378887576--169899
Q gi|254780552|r 55 DHVLFVGPPGLGKTTLAQVVAREL---GVNFRSTSGPVIA----KA---GDLAALLT-NLEDRDVLFIDEIH--RLSIIV 121 (334)
Q Consensus 55 ~h~Lf~GPpG~GKTtlA~iiA~~l---~~~~~~~s~~~~~----~~---~dl~~~~~-~~~~~~vlfiDEih--rl~~~~ 121 (334)
.++||.||||||||-+|-.++.+. |.....++++.+- .+ +.....+. .+...++|+|||.- .+++..
T Consensus 102 ~Nvil~G~~GtGKThLA~Alg~~A~~~G~~v~f~~~~~L~~~L~~a~~~~~~~~~l~r~l~~~dLLIiDdlG~~~~~~~~ 181 (258)
T PRK09183 102 ENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRGVMAPRLLIIDEIGYLPFSQEE 181 (258)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHCCCCEEEEHHHHCCCCCHHH
T ss_conf 86799899998689999999999998799399978999999999998768599999987434651443133154688889
Q ss_pred HHHHHHHHHCC
Q ss_conf 99999986347
Q gi|254780552|r 122 EEILYPAMEDF 132 (334)
Q Consensus 122 q~~Ll~~mE~~ 132 (334)
-+.|+..++++
T Consensus 182 ~~~lfeli~~R 192 (258)
T PRK09183 182 ANLFFQVIAKR 192 (258)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999998
No 225
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.40 E-value=4.6e-07 Score=62.68 Aligned_cols=100 Identities=28% Similarity=0.427 Sum_probs=54.1
Q ss_pred CHHHHCCHHH----HHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCC---CCCCCCCCCCCCCHHHHHH
Q ss_conf 8778239799----99999999998661467767079973788557789999998618---9853125764433467666
Q gi|254780552|r 26 TLEEFTGQVE----ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG---VNFRSTSGPVIAKAGDLAA 98 (334)
Q Consensus 26 ~l~dviGQ~~----~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~---~~~~~~s~~~~~~~~dl~~ 98 (334)
++.||=++.. +...+..+.++.. + ..+++|+||||||||-||-+|++++. .....+..+.+ +.++..
T Consensus 77 ~~~d~~~~~~~~~~~l~~~~~~~~~~~-~---~~nl~l~G~~G~GKthLa~Ai~~~l~~~g~sv~f~~~~el--~~~Lk~ 150 (254)
T COG1484 77 EEFDFEFQPGIDKKALEDLASLVEFFE-R---GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDL--LSKLKA 150 (254)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHC-C---CCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHH--HHHHHH
T ss_conf 430235885566999999999998732-5---8828998999987999999999999983984999885999--999999
Q ss_pred H---------HHH-HHCCCHHHHHHHHHCCHH--HHHHHHHHHHC
Q ss_conf 6---------664-101637888757616989--99999998634
Q gi|254780552|r 99 L---------LTN-LEDRDVLFIDEIHRLSII--VEEILYPAMED 131 (334)
Q Consensus 99 ~---------~~~-~~~~~vlfiDEihrl~~~--~q~~Ll~~mE~ 131 (334)
. +.. +..-++|+|||+-..+.. ..+.++..+..
T Consensus 151 ~~~~~~~~~~l~~~l~~~dlLIiDDlG~~~~~~~~~~~~~q~I~~ 195 (254)
T COG1484 151 AFDEGRLEEKLLRELKKVDLLIIDDIGYEPFSQEEADLLFQLISR 195 (254)
T ss_pred HHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCHHHHHHHHHHHH
T ss_conf 874552689999887528989982367766881558799999999
No 226
>PRK06921 hypothetical protein; Provisional
Probab=98.39 E-value=9.2e-07 Score=60.86 Aligned_cols=25 Identities=40% Similarity=0.659 Sum_probs=22.8
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 6707997378855778999999861
Q gi|254780552|r 54 LDHVLFVGPPGLGKTTLAQVVAREL 78 (334)
Q Consensus 54 ~~h~Lf~GPpG~GKTtlA~iiA~~l 78 (334)
-.+++|+|+||+|||-||.+||+++
T Consensus 116 ~~~l~f~G~~G~GKThLa~aIa~~L 140 (265)
T PRK06921 116 KNSIALLGQPGSGKTHLLTAAANEL 140 (265)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 6627997289898899999999999
No 227
>KOG1051 consensus
Probab=98.36 E-value=8.2e-07 Score=61.15 Aligned_cols=179 Identities=20% Similarity=0.261 Sum_probs=96.4
Q ss_pred CHHHHCCH--HHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHC----------CCCCCCCCCC-CC--
Q ss_conf 87782397--999999999999866146776707997378855778999999861----------8985312576-44--
Q gi|254780552|r 26 TLEEFTGQ--VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL----------GVNFRSTSGP-VI-- 90 (334)
Q Consensus 26 ~l~dviGQ--~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l----------~~~~~~~s~~-~~-- 90 (334)
.++-|+|. +++...+.++.. +..+ +-++.|.||+|||.++.-+|+-. +..++.++-. ..
T Consensus 184 k~dPvigr~deeirRvi~iL~R--r~k~----NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aG 257 (898)
T KOG1051 184 KLDPVIGRHDEEIRRVIEILSR--KTKN----NPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAG 257 (898)
T ss_pred CCCCCCCCCHHHHHHHHHHHHC--CCCC----CCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEEHHHCCCC
T ss_conf 8788658852889999999814--6789----966983687772168999998766178885334552489870000358
Q ss_pred -CCHHHHH-------HHHHHHHCCCHHHHHHHHHCCHHHH-----H--HHHHHHHCCCCCCCCCCCCCCCEEECCCCCCE
Q ss_conf -3346766-------6666410163788875761698999-----9--99998634751002567876520004667400
Q gi|254780552|r 91 -AKAGDLA-------ALLTNLEDRDVLFIDEIHRLSIIVE-----E--ILYPAMEDFQLDLMVGEGPSARSVKINLSRFT 155 (334)
Q Consensus 91 -~~~~dl~-------~~~~~~~~~~vlfiDEihrl~~~~q-----~--~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~ 155 (334)
..-+|+. ......+.+-||||||+|-+-...- + -+|..+..+ ..+.
T Consensus 258 a~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~~~~~d~~nlLkp~L~r-------------------g~l~ 318 (898)
T KOG1051 258 AKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSNYGAIDAANLLKPLLAR-------------------GGLW 318 (898)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCCEEEEECCEEEEECCCCCCHHHHHHHHHHHHHHC-------------------CCEE
T ss_conf 642127889999999998547986899832143220488741189999865888855-------------------9748
Q ss_pred EEECCCCC-C-C---CCHHHHHCCCCEEECCCCCHHHHHHHHHHHHHH----CCCHHHHHHHHHHHCCC------CCCHH
Q ss_conf 55204554-3-3---554544201206732645479999987776541----21011111112332022------10156
Q gi|254780552|r 156 LIAATTRV-G-L---LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKL----TGLAVTDEAACEIAMRS------RGTPR 220 (334)
Q Consensus 156 lI~ATt~~-~-~---l~~~l~sR~~~~~~~~~~~~~el~~il~~~~~~----~~i~~~~~al~~ia~~s------~Gd~R 220 (334)
+|||||-- + + -.|++..||..+. +.-.+.++...|+...... .|..+.++++...+..| +.=+.
T Consensus 319 ~IGatT~e~Y~k~iekdPalErrw~l~~-v~~pS~~~~~~iL~~l~~~~e~~hg~~~s~~a~~~a~~~s~~~~t~r~lpd 397 (898)
T KOG1051 319 CIGATTLETYRKCIEKDPALERRWQLVL-VPIPSVENLSLILPGLSERYEVHHGVRISDESLFSAAQLSARYITLSFLPD 397 (898)
T ss_pred EEECCCHHHHHHHHHHCCCHHHCCCEEE-ECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCH
T ss_conf 9722509999998763820541855167-135765531456555434201134771254334220210123212376833
Q ss_pred HHHHHHHHHH
Q ss_conf 7887775433
Q gi|254780552|r 221 IAGRLLRRVR 230 (334)
Q Consensus 221 ~AlnlLe~v~ 230 (334)
.|+.+...+.
T Consensus 398 ~aidl~dEa~ 407 (898)
T KOG1051 398 CAIDLEDEAA 407 (898)
T ss_pred HCCCHHHHHH
T ss_conf 1045889999
No 228
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=98.36 E-value=5.5e-06 Score=56.11 Aligned_cols=190 Identities=19% Similarity=0.236 Sum_probs=112.6
Q ss_pred CHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHC---CCCCCCCCCCCCC-----------
Q ss_conf 87782397999999999999866146776707997378855778999999861---8985312576443-----------
Q gi|254780552|r 26 TLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL---GVNFRSTSGPVIA----------- 91 (334)
Q Consensus 26 ~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l---~~~~~~~s~~~~~----------- 91 (334)
-|+.+||+....+.+ +..+++-.--=..+|..|-.||||-.+|+..-... +.+|..+|...+.
T Consensus 202 ~F~~~v~~S~~mk~~---v~qA~k~AmlDAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe~~aEsElFG~ 278 (511)
T COG3283 202 GFEQIVAVSPKMKHV---VEQAQKLAMLDAPLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPEDAAESELFGH 278 (511)
T ss_pred CHHHHHHCCHHHHHH---HHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHCC
T ss_conf 447787303999999---99998654037876874488861889999874438455897367644779666767777356
Q ss_pred CHH--HHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCC------
Q ss_conf 346--766666641016378887576169899999999863475100256787652000466740055204554------
Q gi|254780552|r 92 KAG--DLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV------ 163 (334)
Q Consensus 92 ~~~--dl~~~~~~~~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~------ 163 (334)
.++ .-.+.+..+..|+| |+|||-++++.-|--||.++.||..-- .++... +.. ++-+|.||..+
T Consensus 279 apg~~gk~GffE~AngGTV-lLDeIgEmSp~lQaKLLRFL~DGtFRR-VGee~E---v~v---dVRVIcatq~nL~~lv~ 350 (511)
T COG3283 279 APGDEGKKGFFEQANGGTV-LLDEIGEMSPRLQAKLLRFLNDGTFRR-VGEDHE---VHV---DVRVICATQVNLVELVQ 350 (511)
T ss_pred CCCCCCCCCHHHHCCCCEE-EEEHHHHCCHHHHHHHHHHHCCCCCCC-CCCCCE---EEE---EEEEEECCCCCHHHHHH
T ss_conf 8887776346340269748-850033249989999999862776000-377545---787---78999616666999986
Q ss_pred ------------CC--C-CHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCC---HHHHHHHHHHHCCC-CCCHHHHHH
Q ss_conf ------------33--5-54544201206732645479999987776541210---11111112332022-101567887
Q gi|254780552|r 164 ------------GL--L-TNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGL---AVTDEAACEIAMRS-RGTPRIAGR 224 (334)
Q Consensus 164 ------------~~--l-~~~l~sR~~~~~~~~~~~~~el~~il~~~~~~~~i---~~~~~al~~ia~~s-~Gd~R~Aln 224 (334)
+. | .||||.|-. -+.++ ..-.+.+++...++ .++++.+..+-++. -|++|..-|
T Consensus 351 ~g~fReDLfyRLNVLtl~~PpLRer~~---di~pL----~e~Fv~q~s~elg~p~pkl~~~~~~~L~~y~WpGNVRqL~N 423 (511)
T COG3283 351 KGKFREDLFYRLNVLTLNLPPLRERPQ---DIMPL----AELFVQQFSDELGVPRPKLAADLLTVLTRYAWPGNVRQLKN 423 (511)
T ss_pred CCCHHHHHHHHHHEEEECCCCCCCCCC---CCHHH----HHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHH
T ss_conf 372588788775013423885000652---10689----99999999997589987668789999987799960999999
Q ss_pred HHHHHHHHH
Q ss_conf 775433345
Q gi|254780552|r 225 LLRRVRDFA 233 (334)
Q Consensus 225 lLe~v~d~a 233 (334)
.+=++...+
T Consensus 424 ~iyRA~s~~ 432 (511)
T COG3283 424 AIYRALTLL 432 (511)
T ss_pred HHHHHHHHH
T ss_conf 999999985
No 229
>KOG4658 consensus
Probab=98.27 E-value=6.4e-05 Score=49.60 Aligned_cols=276 Identities=20% Similarity=0.212 Sum_probs=123.0
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCC---CCCC-----CCCCCCCCCHHHH-HHHHH
Q ss_conf 3979999999999998661467767079973788557789999998618---9853-----1257644334676-66666
Q gi|254780552|r 31 TGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG---VNFR-----STSGPVIAKAGDL-AALLT 101 (334)
Q Consensus 31 iGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~---~~~~-----~~s~~~~~~~~dl-~~~~~ 101 (334)
|||+..++.+...+- ..+ ...+=+||..|+||||+|+-+=|... ..|. .+|. .+. ..++ ..++.
T Consensus 161 VG~e~~~ekl~~~L~---~d~--~~ivgi~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk-~f~-~~~iq~~Il~ 233 (889)
T KOG4658 161 VGLETMLEKLWNRLM---EDD--VGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSK-EFT-TRKIQQTILE 233 (889)
T ss_pred CCHHHHHHHHHHHHC---CCC--CCEEEEECCCCCCHHHHHHHHHHCCHHHCCCCCEEEEEEECC-CCC-HHHHHHHHHH
T ss_conf 468899999999840---479--968999889703499999998413312235787499999776-310-8889999999
Q ss_pred HHHCCCHHHHH-HHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCC----EEECCCCCC---EEEECCCCCCCCCHHHHHC
Q ss_conf 41016378887-576169899999999863475100256787652----000466740---0552045543355454420
Q gi|254780552|r 102 NLEDRDVLFID-EIHRLSIIVEEILYPAMEDFQLDLMVGEGPSAR----SVKINLSRF---TLIAATTRVGLLTNPLQDR 173 (334)
Q Consensus 102 ~~~~~~vlfiD-Eihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~----~~~~~~~~f---~lI~ATt~~~~l~~~l~sR 173 (334)
.+...+.-.-+ ++ ...+.-++..++..+-.++.. .-+.+ .+..+.|.= .-|.-||+...+..--..+
T Consensus 234 ~l~~~~~~~~~~~~----~~~~~~i~~~L~~krfllvLD-DIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~ 308 (889)
T KOG4658 234 RLGLLDEEWEDKEE----DELASKLLNLLEGKRFLLVLD-DIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGV 308 (889)
T ss_pred HHCCCCCCCCCCCH----HHHHHHHHHHHCCCCEEEEEE-CCCCCCCHHHHCCCCCCCCCCEEEEEEECCHHHHHCCCCC
T ss_conf 84468710001028----899999999855685599982-5675012877189998756872899996458776332477
Q ss_pred CCCEEECCCCCHHHHHHHHHHHHHHCCCHH---HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 120673264547999998777654121011---11111233202210156788777543334554158864277878765
Q gi|254780552|r 174 FGIPIRLNFYEIEDLKTIVQRGAKLTGLAV---TDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAAL 250 (334)
Q Consensus 174 ~~~~~~~~~~~~~el~~il~~~~~~~~i~~---~~~al~~ia~~s~Gd~R~AlnlLe~v~d~a~~~~~~~i~~~~~~~~l 250 (334)
....+.+.++++|-=...++.+-.....- -++..+.+|..++|-|-.. +.+-.. +.... +.+.|+.++
T Consensus 309 -~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl-~viG~~-----ma~K~--t~~eW~~~~ 379 (889)
T KOG4658 309 -DYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLAL-NVLGGL-----LACKK--TVQEWRRAL 379 (889)
T ss_pred -CCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCHHHH-HHHHHH-----HCCCC--CHHHHHHHH
T ss_conf -873005416830029999987366444445207999899987728937999-999998-----44897--789999998
Q ss_pred HHHHCC-CCHHHHHHHHHHHHHHHHHCCCCCHHHH---HHHHH-CCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 421000-0004677688999999751866206999---99982-874567467899999983430587189999998886
Q gi|254780552|r 251 LRLAID-KMGFDQLDLRYLTMIARNFGGGPVGIET---ISAGL-SEPRDAIEDLIEPYMIQQGFIQRTPRGRLLMPIAWQ 325 (334)
Q Consensus 251 ~~~~id-~~Gl~~~d~~~L~~l~~~~~~g~~~~~~---isA~~-ks~RgS~~daa~~yL~r~g~~~~~prgRrL~~~a~E 325 (334)
..+.=. ..+.+..+..++..+.-+|+.=|.+++. -.|.- ..-.--.+..+.||.+ .|++...-.+.++...|++
T Consensus 380 ~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWia-EGfi~~~~~~~~~~d~G~~ 458 (889)
T KOG4658 380 NVLKSSLAADFSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIA-EGFIDPLDGGETAEDVGYD 458 (889)
T ss_pred HHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHC-CCCCCCCCCCCCCCCCHHH
T ss_conf 200301368887336666777640686667988678753314884000542354344541-6666754354442034078
Q ss_pred HCC
Q ss_conf 648
Q gi|254780552|r 326 HLG 328 (334)
Q Consensus 326 diG 328 (334)
+||
T Consensus 459 ~i~ 461 (889)
T KOG4658 459 YIE 461 (889)
T ss_pred HHH
T ss_conf 999
No 230
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=98.11 E-value=2.8e-06 Score=57.87 Aligned_cols=20 Identities=55% Similarity=0.939 Sum_probs=13.4
Q ss_pred EEEECCCCCCHHHH-HHHHHH
Q ss_conf 79973788557789-999998
Q gi|254780552|r 57 VLFVGPPGLGKTTL-AQVVAR 76 (334)
Q Consensus 57 ~Lf~GPpG~GKTtl-A~iiA~ 76 (334)
+.|.||+|+||||+ |++-|+
T Consensus 197 i~lvGPTGVGKTTTiAKLAa~ 217 (282)
T TIGR03499 197 IALVGPTGVGKTTTLAKLAAR 217 (282)
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999778887578899999999
No 231
>KOG0477 consensus
Probab=98.09 E-value=1.3e-05 Score=53.81 Aligned_cols=157 Identities=22% Similarity=0.253 Sum_probs=85.9
Q ss_pred HHCCHHHHHHHHHHHHHHHHHCCCC-------CCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCC-----CC--CHH
Q ss_conf 8239799999999999986614677-------670799737885577899999986189853125764-----43--346
Q gi|254780552|r 29 EFTGQVEACSNLKVFIEAAKARAEA-------LDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPV-----IA--KAG 94 (334)
Q Consensus 29 dviGQ~~~~~~l~~~i~a~~~~~~~-------~~h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~~~-----~~--~~~ 94 (334)
.|.|++.+|..+..++--+..++.. =.|+||.|-|||||.-+-+-+++........+ |.. +. -.+
T Consensus 450 sIyGh~~VK~AvAlaLfGGv~kn~~~khkvRGDinvLL~GDPGTaKSQFLKY~eK~s~RAV~tT-GqGASavGLTa~v~K 528 (854)
T KOG0477 450 SIYGHEDVKRAVALALFGGVPKNPGGKHKVRGDINVLLLGDPGTAKSQFLKYAEKTSPRAVFTT-GQGASAVGLTAYVRK 528 (854)
T ss_pred HHHCHHHHHHHHHHHHHCCCCCCCCCCCEECCCEEEEEECCCCCCHHHHHHHHHHCCCCEEEEC-CCCCCCCCEEEEEEE
T ss_conf 4314589999999998568756889874451440289846998228999999986275316850-677543332688751
Q ss_pred HH--------HHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCC----
Q ss_conf 76--------666664101637888757616989999999986347510025678765200046674005520455----
Q gi|254780552|r 95 DL--------AALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTR---- 162 (334)
Q Consensus 95 dl--------~~~~~~~~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~---- 162 (334)
|- .+.+.- ..+.|-.|||-+.+|-.--...-.+||.-.|.|- ++ -.++..-.+.+.|+|.+.
T Consensus 529 dPvtrEWTLEaGALVL-ADkGvClIDEFDKMndqDRtSIHEAMEQQSISIS--KA---GIVtsLqArctvIAAanPigGR 602 (854)
T KOG0477 529 DPVTREWTLEAGALVL-ADKGVCLIDEFDKMNDQDRTSIHEAMEQQSISIS--KA---GIVTSLQARCTVIAAANPIGGR 602 (854)
T ss_pred CCCCCEEEECCCEEEE-CCCCEEEEEHHHHHCCCCCCHHHHHHHHCCHHHH--HH---HHHHHHHHHHHHHEECCCCCCC
T ss_conf 7865303651672897-2685377412112040110159999875120144--66---6899887554430002777775
Q ss_pred ---------CCCCCHHHHHCCCCEEE----CCCCCHHHHHHHH
Q ss_conf ---------43355454420120673----2645479999987
Q gi|254780552|r 163 ---------VGLLTNPLQDRFGIPIR----LNFYEIEDLKTIV 192 (334)
Q Consensus 163 ---------~~~l~~~l~sR~~~~~~----~~~~~~~el~~il 192 (334)
+-.++.|++|||.+... +++...+-+++.+
T Consensus 603 Y~~s~tFaqNV~ltePIlSRFDiLcVvkD~vd~~~De~lA~fV 645 (854)
T KOG0477 603 YNPSLTFAQNVDLTEPILSRFDILCVVKDTVDPVQDEKLAKFV 645 (854)
T ss_pred CCCCCCHHHCCCCCCCHHHHCCEEEEEECCCCCHHHHHHHHHH
T ss_conf 6875114330554444121113245640355813678899999
No 232
>PRK05574 holA DNA polymerase III subunit delta; Reviewed
Probab=98.09 E-value=0.0001 Score=48.35 Aligned_cols=179 Identities=16% Similarity=0.117 Sum_probs=104.5
Q ss_pred CCCE-EEECCC-CCCHHHHHHHHHHHCCCC-----CCCCCCCCCCCHHHHHHHH---HHHHCCCHHHHHHHHHCCHH---
Q ss_conf 6707-997378-855778999999861898-----5312576443346766666---64101637888757616989---
Q gi|254780552|r 54 LDHV-LFVGPP-GLGKTTLAQVVARELGVN-----FRSTSGPVIAKAGDLAALL---TNLEDRDVLFIDEIHRLSII--- 120 (334)
Q Consensus 54 ~~h~-Lf~GPp-G~GKTtlA~iiA~~l~~~-----~~~~s~~~~~~~~dl~~~~---~~~~~~~vlfiDEihrl~~~--- 120 (334)
++++ +|||+- +.=...+-+++.+..+.+ +..+.|... ...++...+ .-+.++.+++|+....+...
T Consensus 15 l~pvyli~G~e~~li~~~~~~i~~~~~~~~~~~~n~~~~d~~~~-~~~~l~~~~~t~slf~~krlViv~~~~~~~~k~~~ 93 (336)
T PRK05574 15 LAPVYLLYGDEPLLLQEAKDAIRAAARAQGFDERNVFTVDGSET-DWDDVLEACQSLPLFSDRKLVELRLPEGLTGKKGE 93 (336)
T ss_pred CCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCC-CHHHHHHHHCCCCCCCCCEEEEEECCCCCCCHHHH
T ss_conf 98679998586999999999999986077865305899716869-99999998648997789759999888766531137
Q ss_pred -HHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCCC---CCCHH--HHHCCCCEEECCCCCHHHHHHHHHH
Q ss_conf -99999998634751002567876520004667400552045543---35545--4420120673264547999998777
Q gi|254780552|r 121 -VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVG---LLTNP--LQDRFGIPIRLNFYEIEDLKTIVQR 194 (334)
Q Consensus 121 -~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~~---~l~~~--l~sR~~~~~~~~~~~~~el~~il~~ 194 (334)
..+.|..++++.. ++ + ...|+....... +.... ..++.+.+..|.+++..++...++.
T Consensus 94 ~~l~~l~~~l~~~~--------~~--~------~lvli~~~~~~d~~~k~~k~~k~l~~~~~~i~~~~~~~~~l~~~i~~ 157 (336)
T PRK05574 94 EALKRLEAYLENPL--------PH--T------DLLLLAPLPKLDKRKEKSAWFKALKKKAVVVEAQTPKEAELPQWIQQ 157 (336)
T ss_pred HHHHHHHHHHHCCC--------CC--C------EEEEEEECCCCCHHHHHHHHHHHHHHCEEEEEECCCCHHHHHHHHHH
T ss_conf 99999999870799--------99--7------69999877863368888999999984807998069998999999999
Q ss_pred HHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 6541210111111123320221015678877754333455415886427787876542
Q gi|254780552|r 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 (334)
Q Consensus 195 ~~~~~~i~~~~~al~~ia~~s~Gd~R~AlnlLe~v~d~a~~~~~~~i~~~~~~~~l~~ 252 (334)
.++..|++++++|+.+|+.+++||.+.+.|-++.+..|+ +++.|+.++++..+..
T Consensus 158 ~~~~~g~~i~~~a~~~L~~~~g~dl~~l~~EleKL~ly~---~~~~It~~dV~~~v~~ 212 (336)
T PRK05574 158 RLKQQGLRIDAAALQLLAERVEGNLLALAQEIEKLALLY---PDGKITLEDVEEAVPD 212 (336)
T ss_pred HHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHC---CCCCCCHHHHHHHHCC
T ss_conf 999849998989999999972113999999999999837---8888789999998616
No 233
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.07 E-value=4.2e-06 Score=56.80 Aligned_cols=91 Identities=27% Similarity=0.346 Sum_probs=49.7
Q ss_pred CCCCCHHHHCCHH----HHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCC---CCCCCCCCCCCCCHH
Q ss_conf 0789877823979----999999999998661467767079973788557789999998618---985312576443346
Q gi|254780552|r 22 LRPRTLEEFTGQV----EACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG---VNFRSTSGPVIAKAG 94 (334)
Q Consensus 22 lRP~~l~dviGQ~----~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~---~~~~~~s~~~~~~~~ 94 (334)
++--+|+|+.-.+ .+......++..... +....-+.||||+|||||-++-+||+++- .+...+..|.+ ..
T Consensus 122 i~~as~~d~~~~d~~R~~a~~~a~~F~~~y~~-~~~~kGlyl~G~~G~GKTyL~~aian~La~~g~~v~~v~~p~~--~~ 198 (306)
T PRK08939 122 LLQATLADIDLDDLDRLDALMAALDFLEAYKP-GEKVKGLYLYGDFGVGKTYLLAAIANELAKKGVSSTLVHFPEF--IR 198 (306)
T ss_pred HHCCCHHHCCCCCHHHHHHHHHHHHHHHHHCC-CCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHH--HH
T ss_conf 98098986488977899999999999997376-9888778898999998999999999999986992999875999--99
Q ss_pred HHH---------HHHHHHHCCCHHHHHHHH
Q ss_conf 766---------666641016378887576
Q gi|254780552|r 95 DLA---------ALLTNLEDRDVLFIDEIH 115 (334)
Q Consensus 95 dl~---------~~~~~~~~~~vlfiDEih 115 (334)
++. ..+..++.-+||++|+|-
T Consensus 199 ~lK~s~~d~s~~~~i~~~k~~~vLiLDDiG 228 (306)
T PRK08939 199 ELKNAISDGSVKEKIDAVKEAPVLMLDDIG 228 (306)
T ss_pred HHHHHHCCCCHHHHHHHHHCCCEEEEECCC
T ss_conf 999986489889999998449989984446
No 234
>KOG2170 consensus
Probab=98.05 E-value=1.9e-05 Score=52.78 Aligned_cols=107 Identities=25% Similarity=0.317 Sum_probs=62.3
Q ss_pred CHHH-HCCHHHHHHHHHHHHHHHHHCCCCCCC-EE-EECCCCCCHHHHHHHHHHHC-----CCCCC----CCC-CCCCCC
Q ss_conf 8778-239799999999999986614677670-79-97378855778999999861-----89853----125-764433
Q gi|254780552|r 26 TLEE-FTGQVEACSNLKVFIEAAKARAEALDH-VL-FVGPPGLGKTTLAQVVAREL-----GVNFR----STS-GPVIAK 92 (334)
Q Consensus 26 ~l~d-viGQ~~~~~~l~~~i~a~~~~~~~~~h-~L-f~GPpG~GKTtlA~iiA~~l-----~~~~~----~~s-~~~~~~ 92 (334)
.|+. +.||.-+++.+-.++.+......+-.. +| |+|+|||||.-.+++||+.+ ..+|+ .+. -|.-..
T Consensus 79 dL~~~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~~ 158 (344)
T KOG2170 79 DLARALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHASK 158 (344)
T ss_pred HHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHH
T ss_conf 99998632087999999999998628999987589830899875648999999998751125626887655415997678
Q ss_pred HHHHHHHH-----H--HHHCCCHHHHHHHHHCCHHHHHHHHHHHHCC
Q ss_conf 46766666-----6--4101637888757616989999999986347
Q gi|254780552|r 93 AGDLAALL-----T--NLEDRDVLFIDEIHRLSIIVEEILYPAMEDF 132 (334)
Q Consensus 93 ~~dl~~~~-----~--~~~~~~vlfiDEihrl~~~~q~~Ll~~mE~~ 132 (334)
+.|.+.-+ . ....+++++.||++.+++...|+|-|.++.+
T Consensus 159 ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~gLld~lkpfLdyy 205 (344)
T KOG2170 159 IEDYKEELKNRVRGTVQACQRSLFIFDEVDKLPPGLLDVLKPFLDYY 205 (344)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEECHHHHCCHHHHHHHHHHHCCC
T ss_conf 99999999999999998557754873105435876999876663046
No 235
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=1.9e-06 Score=58.96 Aligned_cols=107 Identities=35% Similarity=0.481 Sum_probs=64.4
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC------HHHHHHHHHHHHC--CCHHHHHHHHHCCHHHHH-
Q ss_conf 7670799737885577899999986189853125764433------4676666664101--637888757616989999-
Q gi|254780552|r 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK------AGDLAALLTNLED--RDVLFIDEIHRLSIIVEE- 123 (334)
Q Consensus 53 ~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~~~~~~------~~dl~~~~~~~~~--~~vlfiDEihrl~~~~q~- 123 (334)
+...++++||||+|||++++.+|++ +..+..++++.+.. ...++.++..... ..++|+||++.+.+..+.
T Consensus 17 ~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~~d~~~~~~~~~~~~ 95 (494)
T COG0464 17 PPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIFIDEIDALAPKRSSD 95 (494)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHC-CCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCC
T ss_conf 6421000368876503665676512-541013565224322205108999999899986397636404433212344444
Q ss_pred ----------HHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCCCCCCHHHH--HCCCCE
Q ss_conf ----------999986347510025678765200046674005520455433554544--201206
Q gi|254780552|r 124 ----------ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ--DRFGIP 177 (334)
Q Consensus 124 ----------~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~~~l~~~l~--sR~~~~ 177 (334)
.|+..|.... ... +..+++|+++..+.++++ .||...
T Consensus 96 ~~~~~~~v~~~l~~~~d~~~----------------~~~-v~~~~~~~~~~~~~~a~~~~~~~~~~ 144 (494)
T COG0464 96 QGEVERRVVAQLLALMDGLK----------------RGQ-VIVIGATNRPDGLDPAKRRPGRFDRE 144 (494)
T ss_pred CCHHHHHHHHHHHHHHHCCC----------------CCC-EEEEECCCCCCCHHHHHHCCHHHHHH
T ss_conf 21045789998998764246----------------563-46741344532112777531376788
No 236
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.02 E-value=1.4e-05 Score=53.61 Aligned_cols=57 Identities=28% Similarity=0.472 Sum_probs=41.7
Q ss_pred CCCCCHH-HHCCHHHHHHHHHHHHHHHHHCCCCCCC-EEEECCCCCCHHHHHHHHHHHC
Q ss_conf 0789877-8239799999999999986614677670-7997378855778999999861
Q gi|254780552|r 22 LRPRTLE-EFTGQVEACSNLKVFIEAAKARAEALDH-VLFVGPPGLGKTTLAQVVAREL 78 (334)
Q Consensus 22 lRP~~l~-dviGQ~~~~~~l~~~i~a~~~~~~~~~h-~Lf~GPpG~GKTtlA~iiA~~l 78 (334)
-|-+-|+ ++.|+++++..+-.++.++-.++..-.- ++|.||+|.||+|+++.+-+.|
T Consensus 44 ~ry~~F~d~~fG~e~~i~~~V~~~k~AA~g~~~~k~IllL~GPvGsGKStl~~~Lk~~l 102 (361)
T smart00763 44 KRYRFFDHDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred EECCCHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 85501101311648999999999999984467125699998899887799999999999
No 237
>PRK03839 putative kinase; Provisional
Probab=97.96 E-value=4.8e-06 Score=56.49 Aligned_cols=30 Identities=33% Similarity=0.737 Sum_probs=26.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCC
Q ss_conf 799737885577899999986189853125
Q gi|254780552|r 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTS 86 (334)
Q Consensus 57 ~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s 86 (334)
++.+|.|||||||+|+.+|..+|+++..++
T Consensus 3 I~ITGTPGtGKTTva~~La~~lg~~~i~v~ 32 (180)
T PRK03839 3 IAITGTPGVGKTTISKLLAEKLGYEYVNLR 32 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCEEEEHH
T ss_conf 999789999989999999997698798799
No 238
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.94 E-value=4.3e-06 Score=56.74 Aligned_cols=20 Identities=60% Similarity=0.944 Sum_probs=15.0
Q ss_pred EEEECCCCCCHHHH-HHHHHH
Q ss_conf 79973788557789-999998
Q gi|254780552|r 57 VLFVGPPGLGKTTL-AQVVAR 76 (334)
Q Consensus 57 ~Lf~GPpG~GKTtl-A~iiA~ 76 (334)
+.|.||+|+||||+ |++-|+
T Consensus 213 valVGPTGVGKTTTiAKLAA~ 233 (412)
T PRK05703 213 VALVGPTGVGKTTTLAKLAAR 233 (412)
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999888887567699999999
No 239
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.94 E-value=8.1e-06 Score=55.08 Aligned_cols=32 Identities=31% Similarity=0.666 Sum_probs=29.1
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHCCCCCCCCC
Q ss_conf 70799737885577899999986189853125
Q gi|254780552|r 55 DHVLFVGPPGLGKTTLAQVVARELGVNFRSTS 86 (334)
Q Consensus 55 ~h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s 86 (334)
.|+.|.|+||+||||+++.+|+.++++|.-+.
T Consensus 5 ~nI~liG~~GsGKTtvgk~LA~~L~~~fiD~D 36 (175)
T PRK00131 5 PNIVLIGMMGAGKSTIGRLLAKRLGYEFIDTD 36 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCCCCCC
T ss_conf 80898889999989999999999596902398
No 240
>pfam06309 Torsin Torsin. This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterized by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of (pfam00004) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia.
Probab=97.94 E-value=2.6e-05 Score=51.99 Aligned_cols=51 Identities=20% Similarity=0.216 Sum_probs=36.1
Q ss_pred HHHCCHHHHHHHHHHHHHHHHHCCCCCC--CEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7823979999999999998661467767--07997378855778999999861
Q gi|254780552|r 28 EEFTGQVEACSNLKVFIEAAKARAEALD--HVLFVGPPGLGKTTLAQVVAREL 78 (334)
Q Consensus 28 ~dviGQ~~~~~~l~~~i~a~~~~~~~~~--h~Lf~GPpG~GKTtlA~iiA~~l 78 (334)
..+.||.-+++.+-.++..-.....+-. -|-|+|||||||+-++++||+.+
T Consensus 25 ~~lfGQhla~~~v~~al~~~l~~~~p~KpLVlSfHG~tGtGKn~vs~liA~~L 77 (127)
T pfam06309 25 RRLFGQHLVKQLVVRSVKGHWENPKPRKPLVLSFHGWTGTGKNFVAEIIADNL 77 (127)
T ss_pred HHCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf 75347798999999999999748999997488701899987989999999998
No 241
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.93 E-value=7.1e-06 Score=55.43 Aligned_cols=64 Identities=34% Similarity=0.582 Sum_probs=38.6
Q ss_pred EEEECCCCCCHHH-HHHHHHHHC---CC---CCCCCC-----C-------------C--CCCCHHHHHHHHHHHHCCCHH
Q ss_conf 7997378855778-999999861---89---853125-----7-------------6--443346766666641016378
Q gi|254780552|r 57 VLFVGPPGLGKTT-LAQVVAREL---GV---NFRSTS-----G-------------P--VIAKAGDLAALLTNLEDRDVL 109 (334)
Q Consensus 57 ~Lf~GPpG~GKTt-lA~iiA~~l---~~---~~~~~s-----~-------------~--~~~~~~dl~~~~~~~~~~~vl 109 (334)
+.|.||+|+|||| +|++-|+.. |. .++.+. | | +...+.|+...+..+...+++
T Consensus 179 ~alVGPTGVGKTTTiAKLAAr~~l~~g~~kVaLIT~DTYRIgAvEQLktYa~IlgvPv~vv~~~~eL~~aL~~l~~~dlI 258 (404)
T PRK06995 179 FALVGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALAELRNKHIV 258 (404)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHCCCCEE
T ss_conf 89866888763758999999999983898379997687547899999999987595599959999999999970899999
Q ss_pred HHHHHHHCCHH
Q ss_conf 88757616989
Q gi|254780552|r 110 FIDEIHRLSII 120 (334)
Q Consensus 110 fiDEihrl~~~ 120 (334)
|||=.-+=.+.
T Consensus 259 LIDTaGrs~rD 269 (404)
T PRK06995 259 LIDTVGMSQRD 269 (404)
T ss_pred EEECCCCCCCC
T ss_conf 98099989768
No 242
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.93 E-value=7.2e-05 Score=49.30 Aligned_cols=168 Identities=19% Similarity=0.184 Sum_probs=81.2
Q ss_pred CCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCC-------------
Q ss_conf 0789877823979999999999998661467767079973788557789999998618985312576-------------
Q gi|254780552|r 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP------------- 88 (334)
Q Consensus 22 lRP~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~~------------- 88 (334)
.+|..-..+|-=+.+...+... . .-+-+++.+|+|.||||++.--+..-+ .+..+|-.
T Consensus 8 ~pP~~~~~~v~R~rL~~~L~~~---~-----~~~l~lv~APaG~GKTtl~a~w~~~~~-~~~Wlsld~~d~~~~~f~~~l 78 (903)
T PRK04841 8 SRPVRLDHTVVRERLLAKLSGA---N-----NYRLVLVRSPAGYGKTTLASQWAAGKN-NVGWYSLDESDNQPERFASYL 78 (903)
T ss_pred CCCCCCCCCCCCHHHHHHHHHH---C-----CCCEEEEECCCCCCHHHHHHHHHHCCC-CEEEEECCCCCCCHHHHHHHH
T ss_conf 8999987825547799999851---5-----899799977999889999999983499-859985885448999999999
Q ss_pred ----------------CCCC---HHH-------HHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf ----------------4433---467-------66666641016378887576169899999999863475100256787
Q gi|254780552|r 89 ----------------VIAK---AGD-------LAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGP 142 (334)
Q Consensus 89 ----------------~~~~---~~d-------l~~~~~~~~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~ 142 (334)
.+.. ..+ +...+.......+|+||..|.++...-..++..+=+ ..|
T Consensus 79 ~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvlDD~h~i~~~~~~~~l~~Ll~--------~~p 150 (903)
T PRK04841 79 IAALQQATNGHCSKSEALAEKRQYASLTSLFAQLFIELSDWHQPLYLVLDDYHLITNPEIHEAMRFFLR--------HQP 150 (903)
T ss_pred HHHHHHHCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHH--------HCC
T ss_conf 999998565433112311355665549999999999975589986999868364888689999999998--------389
Q ss_pred CCCEEECCCCCCEEEECCC-CCCCCCHHHHHCCCCEEECCC----CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCC
Q ss_conf 6520004667400552045-543355454420120673264----54799999877765412101111111233202210
Q gi|254780552|r 143 SARSVKINLSRFTLIAATT-RVGLLTNPLQDRFGIPIRLNF----YEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRG 217 (334)
Q Consensus 143 ~a~~~~~~~~~f~lI~ATt-~~~~l~~~l~sR~~~~~~~~~----~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~G 217 (334)
+.+.+|.++= .|+.-...++-+ +.+..+.. ++.+|..+.+.. ..+..++++.+..|.++.+|
T Consensus 151 ---------~~l~lvl~sR~~p~l~l~~l~~~-~~l~~i~~~dL~Ft~~E~~~~~~~---~~g~~l~~~~~~~l~~~TeG 217 (903)
T PRK04841 151 ---------ENLTLVVLSRNLPPLGIANLRVR-DQLLEIGSQQLAFDHQEAQQFFDQ---RLSSPIEAAESSRLCDRVEG 217 (903)
T ss_pred ---------CCEEEEEEECCCCCCCHHHHHHC-CEEEEECHHHCCCCHHHHHHHHHH---CCCCCCCHHHHHHHHHHHCC
T ss_conf ---------88389987689998752457745-956998688759999999999986---25999999999999997087
Q ss_pred CH
Q ss_conf 15
Q gi|254780552|r 218 TP 219 (334)
Q Consensus 218 d~ 219 (334)
=+
T Consensus 218 W~ 219 (903)
T PRK04841 218 WP 219 (903)
T ss_pred HH
T ss_conf 89
No 243
>PRK13695 putative NTPase; Provisional
Probab=97.91 E-value=3.1e-05 Score=51.50 Aligned_cols=24 Identities=42% Similarity=0.607 Sum_probs=20.7
Q ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 079973788557789999998618
Q gi|254780552|r 56 HVLFVGPPGLGKTTLAQVVARELG 79 (334)
Q Consensus 56 h~Lf~GPpG~GKTtlA~iiA~~l~ 79 (334)
.++++||||+||||+.+-+...+.
T Consensus 5 kI~iTG~PGvGKTTli~Kv~~~L~ 28 (174)
T PRK13695 5 RIGITGMPGVGKTTLVLKIAELLA 28 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 999878999889999999999986
No 244
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.91 E-value=0.00068 Score=43.33 Aligned_cols=116 Identities=22% Similarity=0.273 Sum_probs=58.2
Q ss_pred CEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCC----CCHHHHHHHHHHHH--CCCHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf 07997378855778999999861898531257644----33467666666410--1637888757616989999999986
Q gi|254780552|r 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI----AKAGDLAALLTNLE--DRDVLFIDEIHRLSIIVEEILYPAM 129 (334)
Q Consensus 56 h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~~~~----~~~~dl~~~~~~~~--~~~vlfiDEihrl~~~~q~~Ll~~m 129 (334)
-.+++||.+|||||+...+.+.+--.+..++--.. ....|....+.... +...+|+||||....- +.++-...
T Consensus 39 i~~i~GpR~~GKTtllk~l~~~~~~~~iy~~~~d~~~~~~~l~d~~~~~~~~~~~~~~yifLDEIq~v~~W-~~~lk~l~ 117 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIELLDLLRAYIELKEREKSYIFLDEIQNVPDW-ERALKYLY 117 (398)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHH-HHHHHHHH
T ss_conf 49998886477899999999747773599973620001356778999999852225745999833376108-99999997
Q ss_pred HCCCCCC-CCCCCCCCCEEECCCCCCEEEECCCCCCCCCHHHHHCCCCEEECCCCCHHHHHH
Q ss_conf 3475100-256787652000466740055204554335545442012067326454799999
Q gi|254780552|r 130 EDFQLDL-MVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKT 190 (334)
Q Consensus 130 E~~~i~i-~~~~~~~a~~~~~~~~~f~lI~ATt~~~~l~~~l~sR~~~~~~~~~~~~~el~~ 190 (334)
+.+..++ +++.+.... ...+...|.-|. ..+.+-|+|-.|...
T Consensus 118 d~~~~~v~itgsss~ll-----------------~~~~s~~L~GR~-~~~~l~PlSF~Efl~ 161 (398)
T COG1373 118 DRGNLDVLITGSSSSLL-----------------SKEISESLAGRG-KDLELYPLSFREFLK 161 (398)
T ss_pred CCCCCEEEEECCCHHHH-----------------CCCHHHHCCCCE-EEEEECCCCHHHHHH
T ss_conf 56775099983716754-----------------133023249982-378984888899864
No 245
>pfam00910 RNA_helicase RNA helicase. This family includes RNA helicases thought to be involved in duplex unwinding during viral RNA replication. Members of this family are found in a variety of single stranded RNA viruses.
Probab=97.87 E-value=5.1e-06 Score=56.33 Aligned_cols=64 Identities=27% Similarity=0.363 Sum_probs=36.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCC-CCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCHHH
Q ss_conf 7997378855778999999861898531257-6443346766666641016378887576169899
Q gi|254780552|r 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG-PVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121 (334)
Q Consensus 57 ~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~-~~~~~~~dl~~~~~~~~~~~vlfiDEihrl~~~~ 121 (334)
+.|+||||+|||++|+.+|+.+...+..... ....+..+- ..........|+++||+.+.+...
T Consensus 1 i~l~G~~G~GKS~~a~~la~~~~~~~~~~~~~~~Y~~~~~~-~~wdgY~gq~vvi~DD~~~~~~~~ 65 (105)
T pfam00910 1 IWLYGPPGCGKSTLAKYLARALLDHLGLPKKDSVYSRNPDD-DFWDGYTGQPVVIIDDFGQNPDGP 65 (105)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEECCCCC-CCCCCCCCCEEEEEECCCCCCCCC
T ss_conf 98979998988999999999999983778789779678877-656788998579996577788862
No 246
>pfam07693 KAP_NTPase KAP family P-loop domain. The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side.
Probab=97.87 E-value=8.1e-05 Score=48.99 Aligned_cols=36 Identities=19% Similarity=0.205 Sum_probs=25.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCC-----CCCCCCCCCCCC
Q ss_conf 799737885577899999986189-----853125764433
Q gi|254780552|r 57 VLFVGPPGLGKTTLAQVVARELGV-----NFRSTSGPVIAK 92 (334)
Q Consensus 57 ~Lf~GPpG~GKTtlA~iiA~~l~~-----~~~~~s~~~~~~ 92 (334)
+=++||=|+||||+.+.+.+++.. .+...++.....
T Consensus 23 Igl~G~WGsGKTs~l~~~~~~L~~~~~~~~~v~fn~W~~~~ 63 (301)
T pfam07693 23 IGLYGAWGSGKTSFLNLLEDELKEFPEEFHIVYFDPWLFSG 63 (301)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCC
T ss_conf 99989899999999999999986136882699981230479
No 247
>pfam05272 VirE Virulence-associated protein E. This family contains several bacterial virulence-associated protein E like proteins.
Probab=97.85 E-value=0.00039 Score=44.77 Aligned_cols=113 Identities=22% Similarity=0.275 Sum_probs=64.0
Q ss_pred CCCCCCE-EEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf 6776707-997378855778999999861898531257644334676666664101637888757616989999999986
Q gi|254780552|r 51 AEALDHV-LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAM 129 (334)
Q Consensus 51 ~~~~~h~-Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~~~~~~~~dl~~~~~~~~~~~vlfiDEihrl~~~~q~~Ll~~m 129 (334)
|-..+++ +|.|+-|+||||+.+.++.+.-++ +-.... -+|... .+...-|+-+||...+++..++.+=..+
T Consensus 48 G~k~d~vlvL~G~QG~gKStf~~~L~~~~~~d----~~~~~~-~kD~~~---~l~~~wi~el~El~~~~k~~~~~lK~fl 119 (198)
T pfam05272 48 GCKFDHVLILQGAQGSGKSTFLKKLGGEWFTD----SIRSFE-GKDAYE---KLQGVWIVEIAELDGFSKAEVEAIKAFI 119 (198)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHCCC----CCCCCC-CCHHHH---HHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 97677678998898678999999973775156----555767-738999---9998787325987513653299999984
Q ss_pred HCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCCCCCCHHHHH-CC
Q ss_conf 3475100256787652000466740055204554335545442-01
Q gi|254780552|r 130 EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQD-RF 174 (334)
Q Consensus 130 E~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~~~l~~~l~s-R~ 174 (334)
-.. .+. -.-|.++....-.-++.|||.||+..-|..|-=+ ||
T Consensus 120 s~~-~d~--~R~pY~~~~~~~pR~~vfigTtN~~~~L~D~TGnRRF 162 (198)
T pfam05272 120 TRT-VDS--FRAPYGRRAESFPRQCVFVGTTNRDEFLKDPTGNRRF 162 (198)
T ss_pred CCH-HHC--CHHCCCCCCEECCEEEEEEEECCCCCCCCCCCCCEEE
T ss_conf 541-312--3102235640065479999963887655799998168
No 248
>PRK13947 shikimate kinase; Provisional
Probab=97.85 E-value=1.4e-05 Score=53.60 Aligned_cols=34 Identities=32% Similarity=0.535 Sum_probs=30.0
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 6707997378855778999999861898531257
Q gi|254780552|r 54 LDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 (334)
Q Consensus 54 ~~h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~ 87 (334)
+.++.|.|+||+||||+++.+|+.++++|.-+..
T Consensus 1 mknI~LiG~mGsGKTtiGk~La~~L~~~fiD~D~ 34 (171)
T PRK13947 1 MKNIVLIGFMGTGKTTVGKKVATTLSFGFIDTDK 34 (171)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHCCCEEECHH
T ss_conf 9858997999998899999999997969898749
No 249
>PRK13948 shikimate kinase; Provisional
Probab=97.85 E-value=2.3e-05 Score=52.27 Aligned_cols=35 Identities=26% Similarity=0.394 Sum_probs=30.3
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 76707997378855778999999861898531257
Q gi|254780552|r 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 (334)
Q Consensus 53 ~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~ 87 (334)
+-++++|.|+||+||||+++.+|+.++++|+-+..
T Consensus 9 ~~~~IvLIG~mGsGKStiGk~LA~~l~~~fiD~D~ 43 (182)
T PRK13948 9 PATFVALAGFMGTGKSRIGWELSRALALHFVDTDK 43 (182)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHCCCEEECHH
T ss_conf 99818988999998899999999996959888849
No 250
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.80 E-value=1.8e-05 Score=52.96 Aligned_cols=33 Identities=30% Similarity=0.674 Sum_probs=29.5
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 707997378855778999999861898531257
Q gi|254780552|r 55 DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 (334)
Q Consensus 55 ~h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~ 87 (334)
.|+.|.|+||+||||+++.+|+.++++|+-+..
T Consensus 5 knI~LiG~mGsGKstvgk~LA~~l~~~fiD~D~ 37 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHCCCEEECHH
T ss_conf 828988999998899999999996999687809
No 251
>PRK13946 shikimate kinase; Provisional
Probab=97.80 E-value=2.7e-05 Score=51.89 Aligned_cols=32 Identities=34% Similarity=0.542 Sum_probs=29.0
Q ss_pred CEEEECCCCCCHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 07997378855778999999861898531257
Q gi|254780552|r 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 (334)
Q Consensus 56 h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~ 87 (334)
+++|.|++|+||||+++.+|+.++++|.-+..
T Consensus 22 nIvLIG~mGsGKStvGk~LA~~L~~~fiD~D~ 53 (195)
T PRK13946 22 TVVLVGLMGAGKSTVGRRLATMLGLPFLDADT 53 (195)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCEEECHH
T ss_conf 58998999998899999999997979898859
No 252
>pfam03266 DUF265 Protein of unknown function, DUF265.
Probab=97.79 E-value=1.4e-05 Score=53.54 Aligned_cols=23 Identities=48% Similarity=0.866 Sum_probs=19.8
Q ss_pred CEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 07997378855778999999861
Q gi|254780552|r 56 HVLFVGPPGLGKTTLAQVVAREL 78 (334)
Q Consensus 56 h~Lf~GPpG~GKTtlA~iiA~~l 78 (334)
+++++||||+||||+.+-+++.+
T Consensus 1 ki~ITG~pGvGKTTli~kv~~~l 23 (168)
T pfam03266 1 RIFITGPPGVGKTTLVKKVIELL 23 (168)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
T ss_conf 98997899988999999999999
No 253
>TIGR01448 recD_rel helicase, RecD/TraA family; InterPro: IPR006345 These sequences represent a family similar to RecD, the exodeoxyribonuclease V alpha chain of IPR006344 from INTERPRO. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. .
Probab=97.78 E-value=2.8e-05 Score=51.77 Aligned_cols=92 Identities=29% Similarity=0.461 Sum_probs=54.3
Q ss_pred EEEECCCCCCHHHHHHHHHHH---CC-CCCC-----------CCCCCCCCCHH-HHH-----------HHH--------H
Q ss_conf 799737885577899999986---18-9853-----------12576443346-766-----------666--------6
Q gi|254780552|r 57 VLFVGPPGLGKTTLAQVVARE---LG-VNFR-----------STSGPVIAKAG-DLA-----------ALL--------T 101 (334)
Q Consensus 57 ~Lf~GPpG~GKTtlA~iiA~~---l~-~~~~-----------~~s~~~~~~~~-dl~-----------~~~--------~ 101 (334)
+||+|-|||||||+-|.|..- +. ..|. .+.|| ..|+. -+. ..+ .
T Consensus 368 ~iLTGGPGTGKtT~t~~i~~~~~~~~gl~l~~~~~vndd~~v~LaAP-TGrAAkRl~E~TG~~a~TIHRLlG~~~~~~~~ 446 (769)
T TIGR01448 368 VILTGGPGTGKTTITKAIIELYEELKGLDLDKDDYVNDDLPVVLAAP-TGRAAKRLAEVTGLEALTIHRLLGYGSDTKSE 446 (769)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECC-CHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCC
T ss_conf 99857788861689999999998716877553124567764887377-43788851100262123477863689888732
Q ss_pred H--HH---CCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCCCCCCH
Q ss_conf 4--10---1637888757616989999999986347510025678765200046674005520455433554
Q gi|254780552|r 102 N--LE---DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168 (334)
Q Consensus 102 ~--~~---~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~~~l~~ 168 (334)
+ .. +-+.|+|||.-++..--...||.++.+.... .|||=+-+.|++.+
T Consensus 447 ~k~~~~~~~~DL~IvDE~SM~Dt~L~~~lL~a~P~~a~l-------------------llVGD~DQLPSV~p 499 (769)
T TIGR01448 447 NKNLEDPIDADLLIVDESSMVDTWLASSLLAAVPDHARL-------------------LLVGDADQLPSVGP 499 (769)
T ss_pred CHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEE-------------------EEECCCCCCCCCCC
T ss_conf 110113478776998146218899999998617977779-------------------88837688898864
No 254
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=97.77 E-value=2.2e-05 Score=52.38 Aligned_cols=33 Identities=39% Similarity=0.639 Sum_probs=29.6
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 707997378855778999999861898531257
Q gi|254780552|r 55 DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 (334)
Q Consensus 55 ~h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~ 87 (334)
.|++|.|+||+||||+++.+|+.++++|.-+..
T Consensus 3 ~~I~LiG~mGsGKstiGk~LA~~L~~~fiD~D~ 35 (172)
T PRK03731 3 QPLFLVGPRGCGKTTVGMALAQALGYRFVDTDL 35 (172)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHCCCEEECCH
T ss_conf 988998899998899999999985999797869
No 255
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.76 E-value=2.2e-05 Score=52.40 Aligned_cols=31 Identities=32% Similarity=0.666 Sum_probs=28.0
Q ss_pred CEEEECCCCCCHHHHHHHHHHHCCCCCCCCC
Q ss_conf 0799737885577899999986189853125
Q gi|254780552|r 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTS 86 (334)
Q Consensus 56 h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s 86 (334)
++.|.|+||+||||+++.+|+.++++|+-+.
T Consensus 1 nI~LiG~~G~GKstigk~la~~l~~~fiD~D 31 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCEEECC
T ss_conf 9899889999889999999999798979685
No 256
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.75 E-value=6.1e-05 Score=49.73 Aligned_cols=64 Identities=30% Similarity=0.441 Sum_probs=33.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHC--C-------CCCCCCCC------------------C--CCCCHHHHHHHHHHHHCCC
Q ss_conf 7997378855778999999861--8-------98531257------------------6--4433467666666410163
Q gi|254780552|r 57 VLFVGPPGLGKTTLAQVVAREL--G-------VNFRSTSG------------------P--VIAKAGDLAALLTNLEDRD 107 (334)
Q Consensus 57 ~Lf~GPpG~GKTtlA~iiA~~l--~-------~~~~~~s~------------------~--~~~~~~dl~~~~~~~~~~~ 107 (334)
+.|.||.|+||||..-=+|.-+ . +.++.+.. | +...+.|+...+..++..+
T Consensus 177 i~lVGPTGvGKTTTiAKLAa~~~l~~~~k~~~V~lit~DtyRigAveQLktya~il~vp~~v~~~~~dl~~~l~~~~~~D 256 (388)
T PRK12723 177 FILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSKDFD 256 (388)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHCCCC
T ss_conf 99989988757879999999999862676773799980787588999999999997880698578899999999724999
Q ss_pred HHHHHHHHHCCHH
Q ss_conf 7888757616989
Q gi|254780552|r 108 VLFIDEIHRLSII 120 (334)
Q Consensus 108 vlfiDEihrl~~~ 120 (334)
++|||=+-|-.+.
T Consensus 257 ~IlIDTAGrs~~d 269 (388)
T PRK12723 257 LVLIDTIGKSPKD 269 (388)
T ss_pred EEEEECCCCCCCC
T ss_conf 9999589988568
No 257
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family; InterPro: IPR014324 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents the ATP-binding subunit DevA, found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The ABC transporter encoded by the devBCA operon is induced by nitrogen deficiency and is necessary for the formation of the laminated layer which envelops heterocysts , . It is thought to be involved in the export of either the heterocyst-specific glycolipids found in the laminated layer, or an enzyme essential for their formation..
Probab=97.74 E-value=3.7e-06 Score=57.18 Aligned_cols=49 Identities=29% Similarity=0.441 Sum_probs=36.5
Q ss_pred CCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 9877823979999999999998661467767079973788557789999998
Q gi|254780552|r 25 RTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76 (334)
Q Consensus 25 ~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~ 76 (334)
+++++|.|+...++.+-.-+......|+. +|++||+|||||||-.+|..
T Consensus 5 ~~LnHyyG~G~~rkQvL~di~L~i~~GEi---ViltGPSGSGKTTLLtLiG~ 53 (220)
T TIGR02982 5 RNLNHYYGEGSLRKQVLFDINLEINPGEI---VILTGPSGSGKTTLLTLIGG 53 (220)
T ss_pred CCCCCEECCCCCCCEEECCCCEEECCCEE---EEEECCCCCCHHHHHHHHHH
T ss_conf 33441114687421001276317717647---98437889846889998876
No 258
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.74 E-value=2e-05 Score=52.71 Aligned_cols=28 Identities=43% Similarity=0.681 Sum_probs=25.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 7997378855778999999861898531
Q gi|254780552|r 57 VLFVGPPGLGKTTLAQVVARELGVNFRS 84 (334)
Q Consensus 57 ~Lf~GPpG~GKTtlA~iiA~~l~~~~~~ 84 (334)
+...||||+||||+|+.+|+.+|.+++.
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEECCCCCCCCHHHHHHHHHHHCCCEEE
T ss_conf 9961799997027999999982971562
No 259
>PRK13949 shikimate kinase; Provisional
Probab=97.73 E-value=3e-05 Score=51.63 Aligned_cols=33 Identities=42% Similarity=0.638 Sum_probs=29.4
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 707997378855778999999861898531257
Q gi|254780552|r 55 DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 (334)
Q Consensus 55 ~h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~ 87 (334)
..+.|.|+||+||||+++.+|+.++++|.-+..
T Consensus 2 k~I~LiG~mGsGKstiGk~La~~l~~~fiD~D~ 34 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLDF 34 (169)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHCCCEEECCH
T ss_conf 838997999998899999999995999797849
No 260
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.72 E-value=3e-05 Score=51.63 Aligned_cols=32 Identities=28% Similarity=0.553 Sum_probs=28.7
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHCCCCCCCCC
Q ss_conf 70799737885577899999986189853125
Q gi|254780552|r 55 DHVLFVGPPGLGKTTLAQVVARELGVNFRSTS 86 (334)
Q Consensus 55 ~h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s 86 (334)
.++.|.|++|+||||+.+.+|+.||.+|.-+.
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHCCCCCCCCH
T ss_conf 61899717999776899999998199802246
No 261
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=97.69 E-value=2.5e-05 Score=52.11 Aligned_cols=29 Identities=34% Similarity=0.674 Sum_probs=26.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCC
Q ss_conf 799737885577899999986189853125
Q gi|254780552|r 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTS 86 (334)
Q Consensus 57 ~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s 86 (334)
++.+|+|||||||+++.++ ++|.++...+
T Consensus 3 I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~ 31 (180)
T COG1936 3 IAITGTPGVGKTTVCKLLR-ELGYKVIELN 31 (180)
T ss_pred EEEECCCCCCHHHHHHHHH-HHCCCEEEHH
T ss_conf 7993799986687999999-8298466199
No 262
>PRK06585 holA DNA polymerase III subunit delta; Reviewed
Probab=97.66 E-value=0.0019 Score=40.63 Aligned_cols=75 Identities=16% Similarity=0.133 Sum_probs=62.1
Q ss_pred CEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 06732645479999987776541210111111123320221015678877754333455415886427787876542
Q gi|254780552|r 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 (334)
Q Consensus 176 ~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~Gd~R~AlnlLe~v~d~a~~~~~~~i~~~~~~~~l~~ 252 (334)
.++-|-+.+..++...+....+..|+.++++|+..|+.+++||...+-+-||.+..|+ .+.+.||.+.+++++..
T Consensus 135 ~~i~cY~d~~~~l~~~i~~~l~~~g~~i~~~a~~~L~~~~g~d~~~~~~EleKL~ly~--~~~~~It~edv~~~v~~ 209 (343)
T PRK06585 135 AAIPCYADDERDLARLIDDELAKAGLRITPDARAYLVALLGGDRLASRNEIEKLALYA--HGKGEITLDDVRAVVGD 209 (343)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--CCCCCCCHHHHHHHHCC
T ss_conf 9995006998899999999999829997799999999873427999999999999984--89997899999998686
No 263
>PRK00625 shikimate kinase; Provisional
Probab=97.66 E-value=4.1e-05 Score=50.79 Aligned_cols=31 Identities=29% Similarity=0.585 Sum_probs=28.2
Q ss_pred CEEEECCCCCCHHHHHHHHHHHCCCCCCCCC
Q ss_conf 0799737885577899999986189853125
Q gi|254780552|r 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTS 86 (334)
Q Consensus 56 h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s 86 (334)
+++|.|+||+||||+.+.+|+.++++|.-+.
T Consensus 2 nI~LIG~mGsGKStiGk~LA~~l~~~FvD~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEEECH
T ss_conf 2999899999889999999999399957749
No 264
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=97.65 E-value=4.4e-05 Score=50.61 Aligned_cols=32 Identities=31% Similarity=0.539 Sum_probs=28.2
Q ss_pred CCCE-EEECCCCCCHHHHHHHHHHHCCCCCCCC
Q ss_conf 6707-9973788557789999998618985312
Q gi|254780552|r 54 LDHV-LFVGPPGLGKTTLAQVVARELGVNFRST 85 (334)
Q Consensus 54 ~~h~-Lf~GPpG~GKTtlA~iiA~~l~~~~~~~ 85 (334)
.+|+ +..|+.||||||+|+.+|+.++++|..-
T Consensus 7 ~~~iiVVMGVsGsGKSTig~~LA~~l~~~fieg 39 (177)
T PRK11545 7 DHHIYVLMGVSGSGKSAVASAVAHQLHAAFLDG 39 (177)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCCCEECC
T ss_conf 875999984798999999999999819985536
No 265
>KOG3347 consensus
Probab=97.64 E-value=3.8e-05 Score=50.99 Aligned_cols=34 Identities=35% Similarity=0.621 Sum_probs=30.1
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCC
Q ss_conf 7670799737885577899999986189853125
Q gi|254780552|r 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTS 86 (334)
Q Consensus 53 ~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s 86 (334)
..|.+|..|-|||||||+|.-||..++.+++.++
T Consensus 6 ~~PNILvtGTPG~GKstl~~~lae~~~~~~i~is 39 (176)
T KOG3347 6 ERPNILVTGTPGTGKSTLAERLAEKTGLEYIEIS 39 (176)
T ss_pred CCCCEEEECCCCCCCHHHHHHHHHHHCCCEEEHH
T ss_conf 3788798679998802599999997398567455
No 266
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.62 E-value=4.3e-05 Score=50.67 Aligned_cols=28 Identities=43% Similarity=0.764 Sum_probs=24.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 7997378855778999999861898531
Q gi|254780552|r 57 VLFVGPPGLGKTTLAQVVARELGVNFRS 84 (334)
Q Consensus 57 ~Lf~GPpG~GKTtlA~iiA~~l~~~~~~ 84 (334)
++|.||||+||||.|+.||+.+|+....
T Consensus 2 i~l~G~PGsGKgTqa~~La~~~~~~~is 29 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHIS 29 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCEEEC
T ss_conf 8998999998799999999997984676
No 267
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.61 E-value=4.8e-05 Score=50.37 Aligned_cols=30 Identities=23% Similarity=0.603 Sum_probs=25.6
Q ss_pred CEEEECCCCCCHHHHHHHHHHHCCCCCCCC
Q ss_conf 079973788557789999998618985312
Q gi|254780552|r 56 HVLFVGPPGLGKTTLAQVVARELGVNFRST 85 (334)
Q Consensus 56 h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~ 85 (334)
.++|.||||+||+|.|+.+++.++....++
T Consensus 2 ~iillGpPGsGKgT~a~~l~~~~~~~hiSt 31 (225)
T PTZ00088 2 KIVLFGAPGVGKGTFAEILSKKEKLKHINM 31 (225)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCEEECH
T ss_conf 799989999987999999999879906878
No 268
>PRK13764 ATPase; Provisional
Probab=97.58 E-value=9.4e-05 Score=48.56 Aligned_cols=52 Identities=35% Similarity=0.583 Sum_probs=39.9
Q ss_pred HHHHCCCC---CHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 78750789---877823979999999999998661467767079973788557789999998618
Q gi|254780552|r 18 DISLLRPR---TLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 (334)
Q Consensus 18 ~~~~lRP~---~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~ 79 (334)
.+...||- +|+|+-=.+.++++|. + +.+ -+|..||||.||||+|..+|.-+.
T Consensus 230 EITaVRPv~~~sledY~l~~~l~~Rl~---~--~a~-----GilIaG~PGaGKsTfaqalA~~~~ 284 (605)
T PRK13764 230 EITAVRPIVKLSLEDYNLSEKLKERLE---E--RAE-----GILIAGAPGAGKSTFAQALAEFYA 284 (605)
T ss_pred EEEEEEEEEECCHHHCCCCHHHHHHHH---H--CCC-----EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 799971017804777167899999887---3--366-----499977999977899999999998
No 269
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.57 E-value=6.3e-05 Score=49.65 Aligned_cols=29 Identities=31% Similarity=0.607 Sum_probs=26.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCC
Q ss_conf 79973788557789999998618985312
Q gi|254780552|r 57 VLFVGPPGLGKTTLAQVVARELGVNFRST 85 (334)
Q Consensus 57 ~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~ 85 (334)
++..|++|+||||+|+.+|..+|+.|+.-
T Consensus 2 iiv~GvsGsGKSTia~~La~~lg~~~i~~ 30 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFIDG 30 (150)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEECC
T ss_conf 89991899999999999999719956415
No 270
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.55 E-value=5.3e-05 Score=50.10 Aligned_cols=29 Identities=38% Similarity=0.598 Sum_probs=24.3
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 70799737885577899999986189853
Q gi|254780552|r 55 DHVLFVGPPGLGKTTLAQVVARELGVNFR 83 (334)
Q Consensus 55 ~h~Lf~GPpG~GKTtlA~iiA~~l~~~~~ 83 (334)
+-+||+|+||+||||+|+-+|++|..+..
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~ 30 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIW 30 (261)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 56998269998801789999999997200
No 271
>PRK02496 adk adenylate kinase; Provisional
Probab=97.52 E-value=6.8e-05 Score=49.42 Aligned_cols=27 Identities=44% Similarity=0.768 Sum_probs=23.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 799737885577899999986189853
Q gi|254780552|r 57 VLFVGPPGLGKTTLAQVVARELGVNFR 83 (334)
Q Consensus 57 ~Lf~GPpG~GKTtlA~iiA~~l~~~~~ 83 (334)
++|.||||+||+|.|+.||+.+++...
T Consensus 4 iillG~PGSGKgTqa~~L~~~~~~~hi 30 (185)
T PRK02496 4 LIFLGPPGAGKGTQAVVLAEHLQIPHI 30 (185)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCEEE
T ss_conf 999799999989999999999699778
No 272
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=97.52 E-value=0.00016 Score=47.13 Aligned_cols=16 Identities=44% Similarity=0.717 Sum_probs=13.8
Q ss_pred CEEEECCCCCCHHHHH
Q ss_conf 0799737885577899
Q gi|254780552|r 56 HVLFVGPPGLGKTTLA 71 (334)
Q Consensus 56 h~Lf~GPpG~GKTtlA 71 (334)
.+++.||||+||||..
T Consensus 22 ~~vl~a~tGsGKtTqv 37 (812)
T PRK11664 22 QVLLKAPTGAGKSTWL 37 (812)
T ss_pred EEEEEECCCCCHHHHH
T ss_conf 7999908999989999
No 273
>TIGR00362 DnaA chromosomal replication initiator protein DnaA; InterPro: IPR001957 The bacterial dnaA protein , , plays an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) .; GO: 0003677 DNA binding, 0003688 DNA replication origin binding, 0005524 ATP binding, 0006270 DNA replication initiation, 0006275 regulation of DNA replication.
Probab=97.51 E-value=0.0077 Score=36.86 Aligned_cols=254 Identities=20% Similarity=0.278 Sum_probs=140.4
Q ss_pred CHHHHC-CHHHHHHHHHHHHHHHHHCCC-CCCCEEEECCCCCCHHHHHHHHHHHCC-----CCCCCCCCCCCCCHHHHHH
Q ss_conf 877823-979999999999998661467-767079973788557789999998618-----9853125764433467666
Q gi|254780552|r 26 TLEEFT-GQVEACSNLKVFIEAAKARAE-ALDHVLFVGPPGLGKTTLAQVVARELG-----VNFRSTSGPVIAKAGDLAA 98 (334)
Q Consensus 26 ~l~dvi-GQ~~~~~~l~~~i~a~~~~~~-~~~h~Lf~GPpG~GKTtlA~iiA~~l~-----~~~~~~s~~~~~~~~dl~~ 98 (334)
+|+.++ |...-...- .....+..-+. ....+++||..|.|||.+.+.+++..- .....+++..+ ..|...
T Consensus 152 ~~~~~~~g~~~~~~~~-~~~~~~~~p~~p~~~p~~~~gg~glg~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~ 228 (493)
T TIGR00362 152 TFDNFVVGPSNRLAYA-ASLKVAESPGKPAYNPLFLYGGTGLGKTHLLHAIGNGVLELHPNAKVLYVTSENF--LNDFVK 228 (493)
T ss_pred CCCCEEECCCCHHHHH-HHHHHHCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEHHHH--HHHHHH
T ss_conf 0000011465215677-7777640578766562477447542156787776434443067732788501467--899998
Q ss_pred H---------HHHHHCCCHHHHHHHHHCCHH---HHHHHHHH---HHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCC
Q ss_conf 6---------664101637888757616989---99999998---63475100256787652000466740055204554
Q gi|254780552|r 99 L---------LTNLEDRDVLFIDEIHRLSII---VEEILYPA---MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163 (334)
Q Consensus 99 ~---------~~~~~~~~vlfiDEihrl~~~---~q~~Ll~~---mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~ 163 (334)
. ......-+.+++|+++-+... +++.+... .|+++ .++.+..+.
T Consensus 229 ~~~~~~~~~~~~~~~~~d~~l~dd~~~~~~~~~~~~~~~~~~~~l~~~~~---------------------~~~~~~d~~ 287 (493)
T TIGR00362 229 ALRDNKLDDFKKKYRSLDFLLIDDIQFLAGKEKTQEEFFHTFNALHEDGK---------------------QIVLTSDRS 287 (493)
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC---------------------EEEEECCCC
T ss_conf 75200168888876311123111047641352036888888887740685---------------------278851666
Q ss_pred CC----CCHHHHHCCC--CEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 33----5545442012--06732645479999987776541210111111123320221015678877754333455415
Q gi|254780552|r 164 GL----LTNPLQDRFG--IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237 (334)
Q Consensus 164 ~~----l~~~l~sR~~--~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~Gd~R~AlnlLe~v~d~a~~~~ 237 (334)
++ +...+.+||. +...+.+.+.+--..++.+.++..++.+..+.+..++.+...+.|..-..+-++..++.. .
T Consensus 288 p~~~~~~~~~l~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~ 366 (493)
T TIGR00362 288 PKEIPGLEDRLKSRFGWGLTADIEPPDLETRLAILKKKAEEDGINLPEEVLEYIAQHLTSNVRELEGALIRVKAYADL-D 366 (493)
T ss_pred CCHHCHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-C
T ss_conf 201000467776543014100024652357899988654430356527899999886422467776778877654200-1
Q ss_pred CCCCCHHHHHHHHHHHHC-CCCH------HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 886427787876542100-0000------4677688999999751866206999999828745674678999999834
Q gi|254780552|r 238 AKTITREIADAALLRLAI-DKMG------FDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308 (334)
Q Consensus 238 ~~~i~~~~~~~~l~~~~i-d~~G------l~~~d~~~L~~l~~~~~~g~~~~~~isA~~ks~RgS~~daa~~yL~r~g 308 (334)
...++.+.+..++..+-. ...+ .-..+ .+...+.++++-. ..-+.+.-+...-+.+.....|+++..
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (493)
T TIGR00362 367 NADIDLDLVAEVLKDLLPALKEKTNEPNNLVTIE-NILKVVAEYLKLK---VEDLKSKSRKRSVALPRQLALYLAREL 440 (493)
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHH-HHHHHHHHHHHHH---HHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 2100177789999876544310256653210288-8999988875324---566642101002346889999999851
No 274
>PRK08487 DNA polymerase III subunit delta; Validated
Probab=97.51 E-value=0.0029 Score=39.48 Aligned_cols=176 Identities=13% Similarity=0.074 Sum_probs=105.5
Q ss_pred CCCCCCEEEECC-CCCCHHHHHHHHHHHCCCCCC--CCCCC--CCCCHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHH
Q ss_conf 677670799737-885577899999986189853--12576--4433467666666410163788875761698999999
Q gi|254780552|r 51 AEALDHVLFVGP-PGLGKTTLAQVVARELGVNFR--STSGP--VIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125 (334)
Q Consensus 51 ~~~~~h~Lf~GP-pG~GKTtlA~iiA~~l~~~~~--~~s~~--~~~~~~dl~~~~~~~~~~~vlfiDEihrl~~~~q~~L 125 (334)
++.+.-.+|||+ ++.=- ..++.|++.++.+.. ..... ..+.+.+...-.+-++.+.+++|..-..+++...+.|
T Consensus 13 ~~~~~~ylLyG~d~fli~-~y~~~I~~~~~~~~~~~~~yfdE~d~~~i~~~l~~~sLFg~~klv~IK~~~ki~~k~l~~L 91 (328)
T PRK08487 13 NKLPNAFFLYGEDEFQIE-YYAKEISSKFKPEELLKELYFDEYNFSQAKDFLSQGSLFGGKNLLVIKTDKKIPKKELKLL 91 (328)
T ss_pred CCCCCEEEEECCCHHHHH-HHHHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHHH
T ss_conf 988845999568575899-9999999985775211200226578899999973515347774799957774552269999
Q ss_pred HHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCCCC----CCHHH-HHCCCCEEECCCCCHHHHHHHHHHHHHHCC
Q ss_conf 9986347510025678765200046674005520455433----55454-420120673264547999998777654121
Q gi|254780552|r 126 YPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL----LTNPL-QDRFGIPIRLNFYEIEDLKTIVQRGAKLTG 200 (334)
Q Consensus 126 l~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~~~----l~~~l-~sR~~~~~~~~~~~~~el~~il~~~~~~~~ 200 (334)
+..++.- |+. + +|....+..+ +.... ..-+....+|-..+..++..+++..++..|
T Consensus 92 i~~~~~~---------~~n---------~-~Ii~~~~~~~k~~~~~k~~~~~~~~~~V~ff~p~~~el~~~i~~~ak~~g 152 (328)
T PRK08487 92 IELCEKN---------SDN---------F-FIIELYEASMKSSDTEKIFTPKFIAKFVRFFKPNAWEALKLLQERAKELG 152 (328)
T ss_pred HHHHHCC---------CCC---------E-EEEEECCCHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHHC
T ss_conf 9986289---------777---------8-99997061334567888776633623775139986899999999999919
Q ss_pred CHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 011111112332022101567887775433345541588642778787654
Q gi|254780552|r 201 LAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251 (334)
Q Consensus 201 i~~~~~al~~ia~~s~Gd~R~AlnlLe~v~d~a~~~~~~~i~~~~~~~~l~ 251 (334)
+.++++|+..|....++|+-.+.|=|+-..-+ ...|+.+++++.+.
T Consensus 153 ~~Is~~al~~L~e~~g~dL~~~~nELeKL~l~-----~~~It~edI~~l~~ 198 (328)
T PRK08487 153 LDIDQNALNHLFEIQNENLYLAANELEKLAIL-----DAPITLKDIDRLVF 198 (328)
T ss_pred CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHC-----CCCCCHHHHHHHHC
T ss_conf 97799999999998596399999899999853-----78788999999855
No 275
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.49 E-value=0.00031 Score=45.39 Aligned_cols=66 Identities=36% Similarity=0.537 Sum_probs=37.3
Q ss_pred CEEEECCCCCCHHH-HHHHHHHHC------CCCCCCCCC------------------C--CCCCHHHHHHHHHHHHCCCH
Q ss_conf 07997378855778-999999861------898531257------------------6--44334676666664101637
Q gi|254780552|r 56 HVLFVGPPGLGKTT-LAQVVAREL------GVNFRSTSG------------------P--VIAKAGDLAALLTNLEDRDV 108 (334)
Q Consensus 56 h~Lf~GPpG~GKTt-lA~iiA~~l------~~~~~~~s~------------------~--~~~~~~dl~~~~~~~~~~~v 108 (334)
-+.|.||.|+|||| +|++-|.-. .+.++.+.. | +...+.|+...+..+.+.++
T Consensus 205 vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~d~ 284 (407)
T COG1419 205 VIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDCDV 284 (407)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHCCCE
T ss_conf 79998998875887999999999753257606899714411528999999999869955996399999999998531888
Q ss_pred HHHHHHHHCCHHH
Q ss_conf 8887576169899
Q gi|254780552|r 109 LFIDEIHRLSIIV 121 (334)
Q Consensus 109 lfiDEihrl~~~~ 121 (334)
++||-+-|-.++.
T Consensus 285 ILVDTaGrs~~D~ 297 (407)
T COG1419 285 ILVDTAGRSQYDK 297 (407)
T ss_pred EEEECCCCCCCCH
T ss_conf 9996899883378
No 276
>KOG0479 consensus
Probab=97.48 E-value=0.00034 Score=45.17 Aligned_cols=145 Identities=26% Similarity=0.372 Sum_probs=82.8
Q ss_pred HHCCHHHHHHHHHHHHHHHH----HCCCCCC---CEEEECCCCCCHHHHHHHHHHHCCCCCCCC----CC-----CCCC-
Q ss_conf 82397999999999999866----1467767---079973788557789999998618985312----57-----6443-
Q gi|254780552|r 29 EFTGQVEACSNLKVFIEAAK----ARAEALD---HVLFVGPPGLGKTTLAQVVARELGVNFRST----SG-----PVIA- 91 (334)
Q Consensus 29 dviGQ~~~~~~l~~~i~a~~----~~~~~~~---h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~----s~-----~~~~- 91 (334)
-+.|++++|+.+-.++--+- .+|..+. ++|+.|-|-|.|.-|-|-+-+..-.-+-.+ || .+..
T Consensus 302 SI~GH~~vKkAillLLlGGvEk~L~NGshlRGDINiLlvGDPSvAKSQLLRyVLntAplAI~TTGRGSSGVGLTAAVTtD 381 (818)
T KOG0479 302 SIYGHDYVKKAILLLLLGGVEKNLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPLAIATTGRGSSGVGLTAAVTTD 381 (818)
T ss_pred CCCCHHHHHHHHHHHHHCCCEECCCCCCEECCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEC
T ss_conf 20357999999999985450120578862225203898469527899999999841540010368887775514677415
Q ss_pred -CHHH--H-HHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCC----
Q ss_conf -3467--6-6666641016378887576169899999999863475100256787652000466740055204554----
Q gi|254780552|r 92 -KAGD--L-AALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV---- 163 (334)
Q Consensus 92 -~~~d--l-~~~~~~~~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~---- 163 (334)
..++ + ++.+. +..+.|+.|||.+.++-.---+.-.+||.++++|- ..|-.+... .+..+++|-|..
T Consensus 382 ~eTGERRLEAGAMV-LADRGVVCIDEFDKMsDiDRvAIHEVMEQqtVTIa-KAGIHasLN----ARCSVlAAANPvyG~Y 455 (818)
T KOG0479 382 QETGERRLEAGAMV-LADRGVVCIDEFDKMSDIDRVAIHEVMEQQTVTIA-KAGIHASLN----ARCSVLAAANPVYGQY 455 (818)
T ss_pred CCCCHHHHHCCCEE-ECCCCEEEEHHCCCCCCHHHHHHHHHHHCCEEEEE-ECCCHHHHC----CCEEEEEECCCCCCCC
T ss_conf 55313434238368-70585587310022243037899999860538867-110002023----5112443137644346
Q ss_pred -----C----CCCHHHHHCCCCEEE
Q ss_conf -----3----355454420120673
Q gi|254780552|r 164 -----G----LLTNPLQDRFGIPIR 179 (334)
Q Consensus 164 -----~----~l~~~l~sR~~~~~~ 179 (334)
| -++..|+|||.++|-
T Consensus 456 d~~k~P~eNIgLpDSLLSRFDLlFv 480 (818)
T KOG0479 456 DQSKTPMENIGLPDSLLSRFDLLFV 480 (818)
T ss_pred CCCCCHHHCCCCCHHHHHHHCEEEE
T ss_conf 7778856515881777754217788
No 277
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=97.48 E-value=9.7e-05 Score=48.49 Aligned_cols=31 Identities=19% Similarity=0.394 Sum_probs=27.7
Q ss_pred CEEEECCCCCCHHHHHHHHHHHCCCCCCCCC
Q ss_conf 0799737885577899999986189853125
Q gi|254780552|r 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTS 86 (334)
Q Consensus 56 h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s 86 (334)
.++..|+.||||||+++.+|+.++++|..-.
T Consensus 5 a~VVmGVsGsGKSTvg~~LA~~L~~~fiegD 35 (176)
T PRK09825 5 SYILMGVSGSGKSLIGSKIAALFSAKFIDGD 35 (176)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHCCCEECCC
T ss_conf 7999828989989999999999598776234
No 278
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.47 E-value=7.9e-05 Score=49.05 Aligned_cols=64 Identities=27% Similarity=0.447 Sum_probs=34.9
Q ss_pred EEEECCCCCCHHH-HHHHHHHHC---CCCCCCCC--------------------CC--CCCCHHHHHHHHHHHHCCCHHH
Q ss_conf 7997378855778-999999861---89853125--------------------76--4433467666666410163788
Q gi|254780552|r 57 VLFVGPPGLGKTT-LAQVVAREL---GVNFRSTS--------------------GP--VIAKAGDLAALLTNLEDRDVLF 110 (334)
Q Consensus 57 ~Lf~GPpG~GKTt-lA~iiA~~l---~~~~~~~s--------------------~~--~~~~~~dl~~~~~~~~~~~vlf 110 (334)
+.|.||.|+|||| +|++-|+.. +...-.+. -| +...+.++...+.. ...+++|
T Consensus 226 i~lVGPTGVGKTTTiAKLAA~~~l~~~kkVaLIT~DTYRIgAvEQLktYa~Il~iPv~vv~~~~el~~al~~-~~~DlIL 304 (432)
T PRK12724 226 VFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLAR-DGSELIL 304 (432)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHH-CCCCEEE
T ss_conf 999899998889999999999999749927999526653779999999999859945995189999999985-6999999
Q ss_pred HHHHHHCCHHH
Q ss_conf 87576169899
Q gi|254780552|r 111 IDEIHRLSIIV 121 (334)
Q Consensus 111 iDEihrl~~~~ 121 (334)
||=+-|-.++.
T Consensus 305 IDTAGrS~rd~ 315 (432)
T PRK12724 305 IDTAGYSHRNL 315 (432)
T ss_pred EECCCCCCCCH
T ss_conf 92999897899
No 279
>PRK00279 adk adenylate kinase; Reviewed
Probab=97.47 E-value=9.2e-05 Score=48.63 Aligned_cols=27 Identities=37% Similarity=0.773 Sum_probs=23.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 799737885577899999986189853
Q gi|254780552|r 57 VLFVGPPGLGKTTLAQVVARELGVNFR 83 (334)
Q Consensus 57 ~Lf~GPpG~GKTtlA~iiA~~l~~~~~ 83 (334)
++|.||||+||+|.|+.||+.+|....
T Consensus 3 iillG~PGsGKgTqa~~la~~~~~~~i 29 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKYGIPHI 29 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCEEE
T ss_conf 999899999879999999998699178
No 280
>PRK05629 hypothetical protein; Validated
Probab=97.47 E-value=0.0077 Score=36.88 Aligned_cols=174 Identities=14% Similarity=0.109 Sum_probs=107.4
Q ss_pred CCCE-EEECCCCCCHHH-HHHHHHHHC-------CCCCCCCCCCCCCCHHHHHHHHH--HHHCCCHHHHHHHHHCCHHHH
Q ss_conf 6707-997378855778-999999861-------89853125764433467666666--410163788875761698999
Q gi|254780552|r 54 LDHV-LFVGPPGLGKTT-LAQVVAREL-------GVNFRSTSGPVIAKAGDLAALLT--NLEDRDVLFIDEIHRLSIIVE 122 (334)
Q Consensus 54 ~~h~-Lf~GPpG~GKTt-lA~iiA~~l-------~~~~~~~s~~~~~~~~dl~~~~~--~~~~~~vlfiDEihrl~~~~q 122 (334)
.|++ ||+|+=.-=.-. ...+++... +.++..+.+...+ ++++....+ -+.+..+++|-.....++...
T Consensus 15 ~pPvYLl~G~E~yLid~a~~~l~~~i~~~~~~~~~~n~~~~~~~e~~-~~~l~~a~~~~~F~~~RlVvv~~~~~~~~~~~ 93 (331)
T PRK05629 15 QPAVHLVLGEDEFLAERARINIVHDIRSSMASPDSLQVTTLKASEIT-QGELLDALSPSLFAEDRVVVLTNMDQAGQDAV 93 (331)
T ss_pred CCCEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCC-HHHHHHHCCCCCCCCCEEEEEECHHHCCHHHH
T ss_conf 99979997171999999999999999862887446225885078799-99999873758888825999957253064479
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCCC---CCCHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHC
Q ss_conf 999998634751002567876520004667400552045543---35545442012067326454799999877765412
Q gi|254780552|r 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVG---LLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT 199 (334)
Q Consensus 123 ~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~~---~l~~~l~sR~~~~~~~~~~~~~el~~il~~~~~~~ 199 (334)
+.++.+..+- . |.-+||....... ++...+..- +.++.+.++...++..-+.+.++..
T Consensus 94 d~ll~y~~~p----------~--------p~t~LV~~~~~~dkrkkl~k~l~k~-g~v~e~~~l~~~~l~~wi~~~~~~~ 154 (331)
T PRK05629 94 DLALSAAVDP----------S--------PGTYLIVMHSGGGRSKSMVKKLEKV-AVVHDAAKLKDRDRPGWVKQEFKNH 154 (331)
T ss_pred HHHHHHHHCC----------C--------CCEEEEEEECCCCCCHHHHHHHHCC-EEEEECCCCCHHHHHHHHHHHHHHC
T ss_conf 9999984199----------9--------9649999845875106799998607-4698668899999999999999986
Q ss_pred CCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 1011111112332022101567887775433345541588642778787654
Q gi|254780552|r 200 GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251 (334)
Q Consensus 200 ~i~~~~~al~~ia~~s~Gd~R~AlnlLe~v~d~a~~~~~~~i~~~~~~~~l~ 251 (334)
|..++++|+..++.+.+.|++..-|-++... ....+.||.+.++..+.
T Consensus 155 g~~i~~~A~~~L~~~~G~DL~~l~~El~KL~----~~~~g~It~e~V~~~~~ 202 (331)
T PRK05629 155 KVQVTPDVIHALLEGVGSDLRELASAVSQLV----EDTQGNVTVEKVRAYYV 202 (331)
T ss_pred CCCCCHHHHHHHHHHHCCCHHHHHHHHHHHH----CCCCCCCCHHHHHHHHC
T ss_conf 9997999999999996804999999999984----07799858999999826
No 281
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.47 E-value=0.00029 Score=45.59 Aligned_cols=24 Identities=42% Similarity=0.751 Sum_probs=20.4
Q ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 079973788557789999998618
Q gi|254780552|r 56 HVLFVGPPGLGKTTLAQVVARELG 79 (334)
Q Consensus 56 h~Lf~GPpG~GKTtlA~iiA~~l~ 79 (334)
.+..+||||+||||++.-+|..+.
T Consensus 7 ki~ITG~PGvGKtTl~~ki~e~L~ 30 (179)
T COG1618 7 KIFITGRPGVGKTTLVLKIAEKLR 30 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 999867998458999999999998
No 282
>pfam04851 ResIII Type III restriction enzyme, res subunit.
Probab=97.46 E-value=0.00047 Score=44.30 Aligned_cols=61 Identities=26% Similarity=0.213 Sum_probs=35.5
Q ss_pred CEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCHHH
Q ss_conf 079973788557789999998618985312576443346766666641016378887576169899
Q gi|254780552|r 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIV 121 (334)
Q Consensus 56 h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~~~~~~~~dl~~~~~~~~~~~vlfiDEihrl~~~~ 121 (334)
+.+++.|+|+|||.++-.++..+......+ -.+. .-..++....+.-++++||+|+.....
T Consensus 20 ~~~i~~pTGsGKT~~~~~~i~~~~~~~~~~--lvlv---p~~~L~~Q~~~~~lii~DE~H~~~a~~ 80 (103)
T pfam04851 20 RGLIVMATGSGKTLTAAKLIARLLKGKKKV--LFLV---PRKDLLEQALEEFVIIIDEAHHSSAKT 80 (103)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHCCCCE--EEEE---CCHHHHHHHHHHHHHHHHHHHHCCCHH
T ss_conf 869995899987999999999998469929--9990---829999999996564601635235378
No 283
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=97.46 E-value=0.00065 Score=43.44 Aligned_cols=30 Identities=37% Similarity=0.548 Sum_probs=26.6
Q ss_pred CEEEECCCCCCHHHHHHHHHHHCCCCCCCC
Q ss_conf 079973788557789999998618985312
Q gi|254780552|r 56 HVLFVGPPGLGKTTLAQVVARELGVNFRST 85 (334)
Q Consensus 56 h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~ 85 (334)
-++++||.++|||-+|-.+|+.+|.++++.
T Consensus 5 ~i~I~GPTAsGKT~lai~LAk~~~~eIIs~ 34 (308)
T COG0324 5 LIVIAGPTASGKTALAIALAKRLGGEIISL 34 (308)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCEEEC
T ss_conf 799989887577899999999829928930
No 284
>PRK07452 DNA polymerase III subunit delta; Validated
Probab=97.46 E-value=0.0085 Score=36.60 Aligned_cols=178 Identities=16% Similarity=0.095 Sum_probs=96.9
Q ss_pred CCEEEECCC-CCCHHHHHHHHHHHCCCC-----CCCCCCCCCCCHHHHHH---HHHHHHCCCHHHHHHHHHCCH---HHH
Q ss_conf 707997378-855778999999861898-----53125764433467666---666410163788875761698---999
Q gi|254780552|r 55 DHVLFVGPP-GLGKTTLAQVVARELGVN-----FRSTSGPVIAKAGDLAA---LLTNLEDRDVLFIDEIHRLSI---IVE 122 (334)
Q Consensus 55 ~h~Lf~GPp-G~GKTtlA~iiA~~l~~~-----~~~~s~~~~~~~~dl~~---~~~~~~~~~vlfiDEihrl~~---~~q 122 (334)
|=.+|||+= ..=+..+.+++.+.++-+ +..+.|...+.+.++.. .+.-+.++.++++.+..-+.. ...
T Consensus 2 PvYll~GeE~~li~~~~~~i~~~~~~~~~~~fn~~~~dg~e~~~~~~~l~~a~T~Pf~~~~RlVvvk~a~~~~~~~~~~~ 81 (326)
T PRK07452 2 PIYLYWGEDDFALNQAIEKLIDQVVDPEWKSFNYSRLDGDDAEQAIQALNEAMTPPFGSGGRLVWLKNSPLCQGCSEELL 81 (326)
T ss_pred CEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCHHHH
T ss_conf 88999838289999999999996089544676237873755425999999862788778855999836610024878899
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCC-CC---CCCHHHHHCCCCEEE---CCCCCHHHHHHHHHHH
Q ss_conf 9999986347510025678765200046674005520455-43---355454420120673---2645479999987776
Q gi|254780552|r 123 EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTR-VG---LLTNPLQDRFGIPIR---LNFYEIEDLKTIVQRG 195 (334)
Q Consensus 123 ~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~-~~---~l~~~l~sR~~~~~~---~~~~~~~el~~il~~~ 195 (334)
+.|..++++ ++ +.-++|...+. +. ++...+. ..+.+.. +.++..+++...+++.
T Consensus 82 ~~l~~~l~~----------~p--------~~t~lv~~~~~k~D~R~K~~K~l~-k~~~~~ef~~~~~~~~~~l~~wi~~~ 142 (326)
T PRK07452 82 AELERTLPL----------IP--------ENTHLLLTNTKKPDGRLKSTKLLQ-KLAEEKEFSLPPPWDGEGQKQLVERT 142 (326)
T ss_pred HHHHHHHHC----------CC--------CCEEEEEEECCCCCHHHHHHHHHH-HHEEEEEECCCCCCCHHHHHHHHHHH
T ss_conf 999998617----------99--------975999984676323778789998-40113454068865799999999999
Q ss_pred HHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 541210111111123320221015678877754333455415886427787876542
Q gi|254780552|r 196 AKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 (334)
Q Consensus 196 ~~~~~i~~~~~al~~ia~~s~Gd~R~AlnlLe~v~d~a~~~~~~~i~~~~~~~~l~~ 252 (334)
++..|+.++++|+..++.+.++|++..-|=|+.+..|+. .+...|+.++++.....
T Consensus 143 ~~~~g~~i~~~a~~~Lv~~~G~dl~~l~~EleKL~ly~~-~~~~~It~e~V~~lv~~ 198 (326)
T PRK07452 143 AQELGVKLTPEAAELLAEAVGNDSRRLYNELEKLALYAE-NSEKPISAEDVKALVSN 198 (326)
T ss_pred HHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCCCCCCHHHHHHHHCC
T ss_conf 998699989999999999868439999999999998628-99970689999988277
No 285
>pfam00437 GSPII_E Type II/IV secretion system protein. This family contains both type II and type IV pathway secretion proteins from bacteria. VirB11 ATPase is a subunit of the Agrobacterium tumefaciens transfer DNA (T-DNA) transfer system, a type IV secretion pathway required for delivery of T-DNA and effector proteins to plant cells during infection.
Probab=97.43 E-value=0.00028 Score=45.69 Aligned_cols=54 Identities=24% Similarity=0.316 Sum_probs=37.7
Q ss_pred CCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 898778239799999999999986614677670799737885577899999986189
Q gi|254780552|r 24 PRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80 (334)
Q Consensus 24 P~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~~ 80 (334)
+-++++++-.......+..++...-.. -..+|++||+|+||||+.+.+...+..
T Consensus 112 ~~tl~~L~~~g~~~~~~~~~L~~~v~~---~~~ilIsG~TGSGKTT~l~all~~i~~ 165 (283)
T pfam00437 112 SLTLDDLGMTGAFDADIAEFLRQAVQA---RGNILVSGGTGSGKTTLLYALLNEINT 165 (283)
T ss_pred CCCHHHHCCCCCCHHHHHHHHHHHHHC---CCEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 899999738977859999999999981---975999889999889999999984087
No 286
>TIGR01187 potA polyamine ABC transporter, ATP-binding protein; InterPro: IPR005893 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family comprises the spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belongs to the larger ATP-Binding Cassette (ABC) transporter superfamily. Polyamines like spermidine and putrescine play a vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).; GO: 0015417 polyamine-transporting ATPase activity, 0015846 polyamine transport, 0016020 membrane.
Probab=97.40 E-value=9.6e-05 Score=48.52 Aligned_cols=17 Identities=53% Similarity=0.894 Sum_probs=15.8
Q ss_pred ECCCCCCHHHHHHHHHH
Q ss_conf 73788557789999998
Q gi|254780552|r 60 VGPPGLGKTTLAQVVAR 76 (334)
Q Consensus 60 ~GPpG~GKTtlA~iiA~ 76 (334)
-||+||||||+-+++|.
T Consensus 2 LGpSGcGKTTlLrlLAG 18 (331)
T TIGR01187 2 LGPSGCGKTTLLRLLAG 18 (331)
T ss_pred CCCCCCCHHHHHHHHHC
T ss_conf 78888747999999834
No 287
>TIGR01351 adk adenylate kinases; InterPro: IPR006259 Most members of this family are known or believed to be adenylate kinase. Adenylate kinase (ADK) 2.7.4.3 from EC converts ATP + AMP to ADP + ADP, that is, it uses ATP as a phosphate donor for AMP. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). However, some members accept other nucleotide triphosphates as donors, and may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (2.7.4.10 from EC) is Q9UIJ7 from SWISSPROT, a GTP:AMP phosphotransferase that has been identified in bovine heart and human cells and derived from mitrochondrail GTP AMP that is specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate .This family is designated subfamily rather than equivalog for this reason. ADK has also been identified in different bacterial species and in yeast . Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge. ; GO: 0005524 ATP binding, 0016776 phosphotransferase activity phosphate group as acceptor, 0019201 nucleotide kinase activity, 0006139 nucleobase nucleoside nucleotide and nucleic acid metabolic process.
Probab=97.38 E-value=0.00015 Score=47.37 Aligned_cols=29 Identities=45% Similarity=0.770 Sum_probs=25.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCC
Q ss_conf 79973788557789999998618985312
Q gi|254780552|r 57 VLFVGPPGLGKTTLAQVVARELGVNFRST 85 (334)
Q Consensus 57 ~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~ 85 (334)
++|-||||+||=|.|+.|+++++..-+++
T Consensus 2 ~~~lGpPGsGKGTQa~~i~~~~gl~HIST 30 (232)
T TIGR01351 2 LILLGPPGSGKGTQAKRIAEKLGLPHIST 30 (232)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCC
T ss_conf 46755989876679999998608850202
No 288
>pfam09848 DUF2075 Uncharacterized conserved protein (DUF2075). This domain, found in various prokaryotic proteins (including putative ATP/GTP binding proteins), has no known function.
Probab=97.36 E-value=0.00015 Score=47.30 Aligned_cols=80 Identities=35% Similarity=0.448 Sum_probs=43.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHC-----CC--CCCCCCCCCCCCHHH-HH--------HH------H-HHH----HCCCHH
Q ss_conf 7997378855778999999861-----89--853125764433467-66--------66------6-641----016378
Q gi|254780552|r 57 VLFVGPPGLGKTTLAQVVAREL-----GV--NFRSTSGPVIAKAGD-LA--------AL------L-TNL----EDRDVL 109 (334)
Q Consensus 57 ~Lf~GPpG~GKTtlA~iiA~~l-----~~--~~~~~s~~~~~~~~d-l~--------~~------~-~~~----~~~~vl 109 (334)
++..|-||||||-+|--+..++ +. .+...|++....... +. .. + .+. ..-+|+
T Consensus 4 ~~V~G~pGtGKTvv~l~l~~~l~~~~~~~~~~~l~~N~~~~~~l~~~l~~~~~~~~~~~~~~~~~fi~~~~~~~~~~dvv 83 (348)
T pfam09848 4 FLVTGGPGTGKTVVALNLFAELSDSDLGRTAVFLSGNHPLVLVLYEALAGDLKVRKKKLFRKPTSFINNLHKAPPHEDVV 83 (348)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHCCHHHCCCCCCCHHHHCCCCCCCCCCCEE
T ss_conf 99977799389999999999986440268208995786699999999860412001020007252316523579867789
Q ss_pred HHHHHHHCCHH--------HHHHHHHHHHCCCCCC
Q ss_conf 88757616989--------9999999863475100
Q gi|254780552|r 110 FIDEIHRLSII--------VEEILYPAMEDFQLDL 136 (334)
Q Consensus 110 fiDEihrl~~~--------~q~~Ll~~mE~~~i~i 136 (334)
++||+||+... ..+.|...|...++.|
T Consensus 84 ivDEAhRl~~k~~~~~~~~~~~ql~~i~~~a~v~V 118 (348)
T pfam09848 84 IVDEAHRLWTKSDLYFNFSGPNQLDEIMKRAKVVV 118 (348)
T ss_pred EEEHHHHHHHCCCCCCCCCCHHHHHHHHHHCCEEE
T ss_conf 98317866543365567785799999997528599
No 289
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.35 E-value=0.00022 Score=46.36 Aligned_cols=27 Identities=30% Similarity=0.373 Sum_probs=23.1
Q ss_pred CEEEECCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 079973788557789999998618985
Q gi|254780552|r 56 HVLFVGPPGLGKTTLAQVVARELGVNF 82 (334)
Q Consensus 56 h~Lf~GPpG~GKTtlA~iiA~~l~~~~ 82 (334)
+++++||+|+||||+.+.+++++....
T Consensus 27 nIlIsG~tGSGKTTll~al~~~i~~~~ 53 (186)
T cd01130 27 NILISGGTGSGKTTLLNALLAFIPPDE 53 (186)
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCCC
T ss_conf 899989999989999999996133456
No 290
>PRK08118 topology modulation protein; Reviewed
Probab=97.35 E-value=0.00018 Score=46.78 Aligned_cols=31 Identities=26% Similarity=0.558 Sum_probs=27.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 7997378855778999999861898531257
Q gi|254780552|r 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 (334)
Q Consensus 57 ~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~ 87 (334)
++..|+||.||||+|+-++..+|.++..+..
T Consensus 4 I~IiG~~GsGKSTlAr~L~~~~~ip~~~LD~ 34 (167)
T PRK08118 4 IILIGSGGSGKSTLARQLGEKLNIPVHHLDA 34 (167)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEECCC
T ss_conf 9998899987999999999988969796443
No 291
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=97.35 E-value=0.00036 Score=45.02 Aligned_cols=37 Identities=32% Similarity=0.522 Sum_probs=32.0
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 67079973788557789999998618985312576443
Q gi|254780552|r 54 LDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA 91 (334)
Q Consensus 54 ~~h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~~~~~ 91 (334)
-+++-|.|.+|+||||+.+.+|+.++++|+.++. .|+
T Consensus 133 ~~rIaLIGlmGaGKSTvGr~LA~~Lg~pFvDlD~-~IE 169 (304)
T PRK08154 133 RPRIALIGLRGAGKSTLGRMLAARLGVPFVELNR-EIE 169 (304)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHCCCEEECHH-HHH
T ss_conf 7847988999998889999999995989778779-999
No 292
>TIGR02237 recomb_radB DNA repair and recombination protein RadB; InterPro: IPR011939 This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA, eukaryotic RAD51 (IPR011941 from INTERPRO) and DMC1 (IPR011940 from INTERPRO), and archaeal RadA (IPR011938 from INTERPRO) ,, .; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0008094 DNA-dependent ATPase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=97.34 E-value=0.00013 Score=47.72 Aligned_cols=19 Identities=42% Similarity=0.823 Sum_probs=17.6
Q ss_pred EECCCCCCHHHHHHHHHHH
Q ss_conf 9737885577899999986
Q gi|254780552|r 59 FVGPPGLGKTTLAQVVARE 77 (334)
Q Consensus 59 f~GPpG~GKTtlA~iiA~~ 77 (334)
+|||||+|||++|-+.|..
T Consensus 17 iYGp~G~GKTn~c~~~a~~ 35 (223)
T TIGR02237 17 IYGPPGSGKTNICLILAVN 35 (223)
T ss_pred EECCCCCCHHHHHHHHHHH
T ss_conf 8758998678999999999
No 293
>PRK07261 topology modulation protein; Provisional
Probab=97.33 E-value=0.0002 Score=46.61 Aligned_cols=31 Identities=23% Similarity=0.386 Sum_probs=27.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 7997378855778999999861898531257
Q gi|254780552|r 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 (334)
Q Consensus 57 ~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~ 87 (334)
++..|+||.||||+|+-++..+|.++..+..
T Consensus 3 I~IiG~sGsGKSTlAr~L~~~~~ip~~~LD~ 33 (171)
T PRK07261 3 IAIIGYSGSGKSTLARFLGQHYNCPVLHLDQ 33 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEEECC
T ss_conf 9998899986899999999987979797022
No 294
>TIGR00455 apsK adenylylsulfate kinase; InterPro: IPR002891 Enzyme that catalyses the phosphorylation of adenylylsulphate to 3'-phosphoadenylylsulphate. This domain contains an ATP binding P-loop motif .; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity transferring phosphorus-containing groups, 0000103 sulfate assimilation.
Probab=97.32 E-value=0.00029 Score=45.58 Aligned_cols=35 Identities=31% Similarity=0.497 Sum_probs=26.6
Q ss_pred CCCCEE-EECCCCCCHHHHHHHHHHHC---CCCCCCCCC
Q ss_conf 767079-97378855778999999861---898531257
Q gi|254780552|r 53 ALDHVL-FVGPPGLGKTTLAQVVAREL---GVNFRSTSG 87 (334)
Q Consensus 53 ~~~h~L-f~GPpG~GKTtlA~iiA~~l---~~~~~~~s~ 87 (334)
+-+.+| |+|++|.||||+|.++.+.| |+....+.|
T Consensus 17 h~g~vlWlTGLSGsGKsTiA~Al~~~L~~~G~~~~~LDG 55 (187)
T TIGR00455 17 HRGVVLWLTGLSGSGKSTIANALEKKLEKKGYRVYVLDG 55 (187)
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 973898511688563579999999999966974999758
No 295
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=97.30 E-value=0.00016 Score=47.14 Aligned_cols=109 Identities=13% Similarity=0.139 Sum_probs=66.2
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHCCCC-------------CC----CCCCCCCC---CHHHHHHH---HH--H-HHCCC
Q ss_conf 6707997378855778999999861898-------------53----12576443---34676666---66--4-10163
Q gi|254780552|r 54 LDHVLFVGPPGLGKTTLAQVVARELGVN-------------FR----STSGPVIA---KAGDLAAL---LT--N-LEDRD 107 (334)
Q Consensus 54 ~~h~Lf~GPpG~GKTtlA~iiA~~l~~~-------------~~----~~s~~~~~---~~~dl~~~---~~--~-~~~~~ 107 (334)
..+.||.|- +.++....+++-..+- +. ..++..-. ++.+++.+ +. . .+...
T Consensus 15 sns~l~~~~---N~~~~l~~~~~fi~~~~~~~~~~le~~pd~~~i~~~~~~~sn~KnI~IdQIR~L~~fl~~ts~~s~~K 91 (263)
T PRK06581 15 YNSWLIEAE---NIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNISIEQIRKLQDFLNKTSAISGYK 91 (263)
T ss_pred HHHHHHCCC---CHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCE
T ss_conf 466643078---86799999999999998626865235832888742034566567357999999999963475468945
Q ss_pred HHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCCCCCCHHHHHCCCCEEECCCCC
Q ss_conf 78887576169899999999863475100256787652000466740055204554335545442012067326454
Q gi|254780552|r 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYE 184 (334)
Q Consensus 108 vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~~~l~~~l~sR~~~~~~~~~~~ 184 (334)
|.+||.++.++..++++||..+|+ |... -.+|.-|+++..|.++++|||. .+.|....
T Consensus 92 V~IId~Ae~mn~~AaNALLK~LEE----------PP~n--------t~iiLiT~~~~~LLpTIrSRCq-~inf~s~~ 149 (263)
T PRK06581 92 VAIIYSADLMNLNAANSCLKILED----------APKN--------SYIFLITSRAASIISTIRSRCF-KINCRSSA 149 (263)
T ss_pred EEEEECHHHHCHHHHHHHHHHHCC----------CCCC--------CEEEEEECCHHHCCCHHHHCCE-EEECCCCH
T ss_conf 999947677498989989987418----------9878--------2899986982446146543457-87358810
No 296
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.30 E-value=0.00023 Score=46.21 Aligned_cols=25 Identities=52% Similarity=1.022 Sum_probs=22.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCC
Q ss_conf 7997378855778999999861898
Q gi|254780552|r 57 VLFVGPPGLGKTTLAQVVARELGVN 81 (334)
Q Consensus 57 ~Lf~GPpG~GKTtlA~iiA~~l~~~ 81 (334)
+++.||||.||||+|+.||+.++..
T Consensus 3 iiilG~pGaGK~T~A~~La~~~~i~ 27 (178)
T COG0563 3 ILILGPPGAGKSTLAKKLAKKLGLP 27 (178)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCC
T ss_conf 9998999998899999999976997
No 297
>TIGR02858 spore_III_AA stage III sporulation protein AA; InterPro: IPR014217 Proteins in this entry include the stage III sporulation protein AA that is encoded by one of several genes in the spoIIIA locus. This protein is only found in species that are capable of endospore formation..
Probab=97.30 E-value=0.00021 Score=46.44 Aligned_cols=84 Identities=26% Similarity=0.345 Sum_probs=52.1
Q ss_pred CCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCC-----CCCCHHHHHHHH------------------------
Q ss_conf 467767079973788557789999998618985312576-----443346766666------------------------
Q gi|254780552|r 50 RAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGP-----VIAKAGDLAALL------------------------ 100 (334)
Q Consensus 50 ~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~~-----~~~~~~dl~~~~------------------------ 100 (334)
++...-+.|+-|||=||||||-|=||+.+...+....-+ .+..-+++++.+
T Consensus 119 ~~~~~~NTLiIsPPq~GKTTlLRDlaR~~StG~~~~~~~g~KVgivDERSEIAgC~~GvPQ~~vG~RtDVLD~CPKAEGm 198 (282)
T TIGR02858 119 RNGRVLNTLIISPPQCGKTTLLRDLARILSTGISKLGLKGKKVGIVDERSEIAGCVNGVPQLDVGIRTDVLDGCPKAEGM 198 (282)
T ss_pred CCCCEEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEECCHHHHHHCCCCCCCCCCCCEEECCCCCHHHHH
T ss_conf 58944678888688988510488898886078542468997469984324656545882414467606751788537899
Q ss_pred ----HHHHCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCC
Q ss_conf ----641016378887576169899999999863475100
Q gi|254780552|r 101 ----TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 (334)
Q Consensus 101 ----~~~~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i 136 (334)
-++. ++|+..|||=+ ..--++|+.++..|.-.|
T Consensus 199 MM~iRSMS-P~Viv~DEIGr--~ED~~Al~eA~naGV~~I 235 (282)
T TIGR02858 199 MMLIRSMS-PDVIVVDEIGR--EEDVEALLEALNAGVSVI 235 (282)
T ss_pred HHHHHCCC-CCEEEEECCCC--HHHHHHHHHHHCCCCEEE
T ss_conf 99997069-85799814889--533899999861675688
No 298
>KOG2543 consensus
Probab=97.27 E-value=0.00097 Score=42.36 Aligned_cols=56 Identities=20% Similarity=0.221 Sum_probs=39.3
Q ss_pred HHCCHHHHHHHHHHHHHHHHHCCCCCC-CEEEECCCCCCHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 823979999999999998661467767-07997378855778999999861898531257
Q gi|254780552|r 29 EFTGQVEACSNLKVFIEAAKARAEALD-HVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 (334)
Q Consensus 29 dviGQ~~~~~~l~~~i~a~~~~~~~~~-h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~ 87 (334)
.|-+-+..+..++.++-. . ...+| |+.+||-.|||||.+.+.+-+..+.+.+.++.
T Consensus 7 ~v~~Re~qi~~L~~Llg~-~--~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~ 63 (438)
T KOG2543 7 NVPCRESQIRRLKSLLGN-N--SCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNC 63 (438)
T ss_pred CCCCHHHHHHHHHHHHCC-C--CCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEH
T ss_conf 765468999999998478-9--86665157996147874559999998603786305415
No 299
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.25 E-value=0.00022 Score=46.30 Aligned_cols=27 Identities=44% Similarity=0.660 Sum_probs=21.7
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHCCCC
Q ss_conf 707997378855778999999861898
Q gi|254780552|r 55 DHVLFVGPPGLGKTTLAQVVARELGVN 81 (334)
Q Consensus 55 ~h~Lf~GPpG~GKTtlA~iiA~~l~~~ 81 (334)
.+.|+-|||||||||+-|-||.-+...
T Consensus 138 lntLiigpP~~GKTTlLRdiaR~~s~g 164 (308)
T COG3854 138 LNTLIIGPPQVGKTTLLRDIARLLSDG 164 (308)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHCC
T ss_conf 246996599887077999999986315
No 300
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=97.25 E-value=0.0021 Score=40.36 Aligned_cols=200 Identities=18% Similarity=0.156 Sum_probs=92.1
Q ss_pred HHCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCH------
Q ss_conf 75078987782397999999999999866146776707997378855778999999861898531257644334------
Q gi|254780552|r 20 SLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA------ 93 (334)
Q Consensus 20 ~~lRP~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~~~~~~~------ 93 (334)
+..+++...+++|-..+........-+ ...+. ....||-+|.|||+-++-+++.-...+...--|.....
T Consensus 64 q~~~~~~~~~~l~tkt~r~~~~~~~~A-~k~g~---l~~vyg~~g~gKt~a~~~y~~s~p~~~l~~~~p~~~a~~~i~~i 139 (297)
T COG2842 64 QAALEKLAPDFLETKTVRRIFFRTRPA-SKTGS---LVVVYGYAGLGKTQAAKNYAPSNPNALLIEADPSYTALVLILII 139 (297)
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHH-HHCCC---EEEEECCCCCHHHHHHHHHCCCCCCCEEECCCHHHHHHHHHHHH
T ss_conf 335554664320350247675420555-51685---47886332200689998653358641361588136788999999
Q ss_pred ------------HHHHHHH-HH-HHCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEEC
Q ss_conf ------------6766666-64-101637888757616989999999986347510025678765200046674005520
Q gi|254780552|r 94 ------------GDLAALL-TN-LEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAA 159 (334)
Q Consensus 94 ------------~dl~~~~-~~-~~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~A 159 (334)
.|...-. .. ......+++||..++.-...|.+...-+..-+- |.++|-
T Consensus 140 ~~~~~~~~~~~~~d~~~~~~~~l~~~~~~iivDEA~~L~~~ale~lr~i~d~~Gi~------------------~vLvG~ 201 (297)
T COG2842 140 CAAAFGATDGTINDLTERLMIRLRDTVRLIIVDEADRLPYRALEELRRIHDKTGIG------------------VVLVGM 201 (297)
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHCCCCCEEEEEHHHCCCHHHHHHHHHHHHHHCCE------------------EEEECC
T ss_conf 99874014216888899999997157652665032125868999999988750815------------------998367
Q ss_pred ------CCCCCCCCHHHHHC--CCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf ------45543355454420--1206732645479999987776541210111111123320221015678877754333
Q gi|254780552|r 160 ------TTRVGLLTNPLQDR--FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRD 231 (334)
Q Consensus 160 ------Tt~~~~l~~~l~sR--~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~Gd~R~AlnlLe~v~d 231 (334)
+-++.-...-+.|| |+......+...+++..+...... ..+++.+..+.....|..|...-+|--+.-
T Consensus 202 prL~~~l~~~~~~~~rl~srv~v~~~~~~~~~d~d~~~~~~~~~l~----~~~~~~v~~~~~~~~g~~~~L~~~l~~~~~ 277 (297)
T COG2842 202 PRLFKVLRRPEDELSRLYSRVRVGKLLGEKFPDADELAEIAALVLP----TEDELVLMQVIKETEGNIRRLDKILAGAVG 277 (297)
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----CCHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf 6888516640578999998756676553320536888999986176----326999999999600157689999860144
Q ss_pred HHHHHCCCCCCHHH
Q ss_conf 45541588642778
Q gi|254780552|r 232 FAEVAHAKTITREI 245 (334)
Q Consensus 232 ~a~~~~~~~i~~~~ 245 (334)
.|...+...++..+
T Consensus 278 ~a~~~~~~~~~~~v 291 (297)
T COG2842 278 TARSNGIKDIDKPV 291 (297)
T ss_pred HHHHCCCCCCCHHH
T ss_conf 54422653200689
No 301
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=97.25 E-value=0.0011 Score=41.98 Aligned_cols=30 Identities=37% Similarity=0.520 Sum_probs=25.4
Q ss_pred CEEEECCCCCCHHHHHHHHHHHCCCCCCCC
Q ss_conf 079973788557789999998618985312
Q gi|254780552|r 56 HVLFVGPPGLGKTTLAQVVARELGVNFRST 85 (334)
Q Consensus 56 h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~ 85 (334)
-+++.||.|+|||.+|--+|+.++.+++..
T Consensus 6 ii~i~GpTasGKs~la~~la~~~~~eIIsa 35 (304)
T PRK00091 6 LIVLVGPTASGKTALAIELAKRLNGEIISV 35 (304)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEEEEE
T ss_conf 799989886589999999999879989941
No 302
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.25 E-value=0.00026 Score=45.85 Aligned_cols=28 Identities=39% Similarity=0.746 Sum_probs=24.9
Q ss_pred EEECCCCCCHHHHHHHHHHHCCCCCCCC
Q ss_conf 9973788557789999998618985312
Q gi|254780552|r 58 LFVGPPGLGKTTLAQVVARELGVNFRST 85 (334)
Q Consensus 58 Lf~GPpG~GKTtlA~iiA~~l~~~~~~~ 85 (334)
-.-||||+||||+|+.||+.+|+.+...
T Consensus 3 aIdGpagsGKsT~ak~lA~~l~~~~ldt 30 (147)
T cd02020 3 AIDGPAGSGKSTVAKLLAKKLGLPYLDT 30 (147)
T ss_pred EEECCCCCCHHHHHHHHHHHHCCEEECC
T ss_conf 8868997898999999999909907766
No 303
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.25 E-value=0.0007 Score=43.23 Aligned_cols=27 Identities=30% Similarity=0.415 Sum_probs=22.1
Q ss_pred CHHHHHHHHHCCHHHHHHHHHHHHCCC
Q ss_conf 378887576169899999999863475
Q gi|254780552|r 107 DVLFIDEIHRLSIIVEEILYPAMEDFQ 133 (334)
Q Consensus 107 ~vlfiDEihrl~~~~q~~Ll~~mE~~~ 133 (334)
+||+|||.-++.-.-...|+.++....
T Consensus 262 DvlIVDEASMVDl~Lm~~LL~Alp~~a 288 (607)
T PRK10875 262 DVLVVDEASMIDLPMMSRLIDALPDHA 288 (607)
T ss_pred CEEEEECCHHHHHHHHHHHHHHCCCCC
T ss_conf 989990733665999999998289998
No 304
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=97.25 E-value=0.00027 Score=45.77 Aligned_cols=30 Identities=27% Similarity=0.531 Sum_probs=27.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCC
Q ss_conf 799737885577899999986189853125
Q gi|254780552|r 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTS 86 (334)
Q Consensus 57 ~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s 86 (334)
+.|.|++|+||||+.+.+|+.|+++|.-+.
T Consensus 3 I~LiG~mGaGKTtvGr~LA~~L~~~FvD~D 32 (488)
T PRK13951 3 IFLVGMMGSGKSTIGKRISEVLDLQFIDMD 32 (488)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEECH
T ss_conf 999899999877999999998397956477
No 305
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA; InterPro: IPR010222 This entry represents HrpA, one of two related but uncharacterised DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterised, is about 800 amino acids long. Related characterised eukaryotic proteins are RNA helicases associated with pre-mRNA processing.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity.
Probab=97.22 E-value=0.00023 Score=46.24 Aligned_cols=73 Identities=34% Similarity=0.538 Sum_probs=43.8
Q ss_pred EEEECCCCCCHHH-----------------------------HHHHHHHHCCCCCCCCCCCCCC---CHHH--HH-----
Q ss_conf 7997378855778-----------------------------9999998618985312576443---3467--66-----
Q gi|254780552|r 57 VLFVGPPGLGKTT-----------------------------LAQVVARELGVNFRSTSGPVIA---KAGD--LA----- 97 (334)
Q Consensus 57 ~Lf~GPpG~GKTt-----------------------------lA~iiA~~l~~~~~~~s~~~~~---~~~d--l~----- 97 (334)
++..|-.|.|||| +|.=||.||+.++..+-|--+. .+++ ++
T Consensus 87 viiAGETGSGKTTQLPKICLELGrG~~GlIGHTQPRRlAAR~VA~R~AeELgtplGe~VGYkVRF~D~v~~~t~VKLmTD 166 (1320)
T TIGR01967 87 VIIAGETGSGKTTQLPKICLELGRGSRGLIGHTQPRRLAARSVAERVAEELGTPLGELVGYKVRFEDQVSSNTLVKLMTD 166 (1320)
T ss_pred EEEECCCCCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCEEEEHHH
T ss_conf 99972448762023216777542787654124714688999999999998388988613203663142688543630322
Q ss_pred HHH-HH------HHCCCHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 666-64------1016378887576169899999999863
Q gi|254780552|r 98 ALL-TN------LEDRDVLFIDEIHRLSIIVEEILYPAME 130 (334)
Q Consensus 98 ~~~-~~------~~~~~vlfiDEihrl~~~~q~~Ll~~mE 130 (334)
+|+ .- +...+-++|||+|+=|=++ |+||-++-
T Consensus 167 GiLLAE~Q~DRfL~~YDTIIIDEAHERSLNI-DFLLGYLK 205 (1320)
T TIGR01967 167 GILLAETQQDRFLERYDTIIIDEAHERSLNI-DFLLGYLK 205 (1320)
T ss_pred HHHHHHHHHHHHHHHCCCEEECCHHHHHHHH-HHHHHHHH
T ss_conf 3589985200222106733651123112338-89998887
No 306
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.19 E-value=0.00062 Score=43.57 Aligned_cols=25 Identities=32% Similarity=0.648 Sum_probs=18.2
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 6707997378855778999999861
Q gi|254780552|r 54 LDHVLFVGPPGLGKTTLAQVVAREL 78 (334)
Q Consensus 54 ~~h~Lf~GPpG~GKTtlA~iiA~~l 78 (334)
+.-++|.||.|+||||.+-=+|.-+
T Consensus 75 ~~vI~lvG~~G~GKTTT~AKLA~~~ 99 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQF 99 (270)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 8189998889898899999999999
No 307
>TIGR00764 lon_rel ATP-dependent protease, putative; InterPro: IPR004663 Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes . They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence . Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases . Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base . The geometric orientations of the catalytic residues are similar between families, despite different protein folds . The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) , . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This signature defines the archaeal lon protease homologs, which are ATP-dependent serine peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SF). Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein conserved region.; GO: 0004176 ATP-dependent peptidase activity, 0005524 ATP binding, 0030163 protein catabolic process.
Probab=97.18 E-value=0.00059 Score=43.70 Aligned_cols=108 Identities=26% Similarity=0.359 Sum_probs=60.7
Q ss_pred CHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCC--CEEEC-CC-CCCEEEECCCC--CCCCCHHHHHCCC---CE
Q ss_conf 37888757616989999999986347510025678765--20004-66-74005520455--4335545442012---06
Q gi|254780552|r 107 DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSA--RSVKI-NL-SRFTLIAATTR--VGLLTNPLQDRFG---IP 177 (334)
Q Consensus 107 ~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a--~~~~~-~~-~~f~lI~ATt~--~~~l~~~l~sR~~---~~ 177 (334)
.++|+||+..++-..|+.++.+|++.+.-+ ++.++.+ .+++. +. ..|.++.+.+- ...+.+++++|.. ..
T Consensus 237 g~l~~d~~~~~~~~~~~~~l~~~~~~~~p~-~g~~~~~~g~~~~~~p~pcdf~l~~~g~~~~~~~~~~~l~~~~~g~gy~ 315 (662)
T TIGR00764 237 GVLYIDEIGTLPLEVQQYLLTALQDKKFPI-TGQSENSSGAMVRTEPVPCDFILVASGNLDDLEGLHPALRSRIRGYGYE 315 (662)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHCCCCC-CCCCCCCCCCEEECCCCCCCEEEEECCCHHHHHHCCHHHHHHHCCCCEE
T ss_conf 505540113221135788887654113543-5677655564121156662144551465456541004566543014416
Q ss_pred EECCC---CC---HHHHHHHHHHHHHHC-CC-HHHHHHHHHHHCCC
Q ss_conf 73264---54---799999877765412-10-11111112332022
Q gi|254780552|r 178 IRLNF---YE---IEDLKTIVQRGAKLT-GL-AVTDEAACEIAMRS 215 (334)
Q Consensus 178 ~~~~~---~~---~~el~~il~~~~~~~-~i-~~~~~al~~ia~~s 215 (334)
..++. -+ .+.+.+.+....+.. ++ .++.++..++.+.+
T Consensus 316 ~~~~~~~~~~~~~~~~l~~f~~~~~~~~g~~~~~~~~~~~~~~~~~ 361 (662)
T TIGR00764 316 VYLKDTMPDTPENRDKLVQFVAQEVKKDGRLPHFTRDAVEEIVREA 361 (662)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 8872667775024789999999987624788864267899999998
No 308
>KOG0481 consensus
Probab=97.17 E-value=0.0028 Score=39.55 Aligned_cols=146 Identities=23% Similarity=0.307 Sum_probs=79.6
Q ss_pred HHCCHHHHHHHHHHHHHHHHHCCCCCC---------CEEEECCCCCCHHHHHHHHHHHCCCCCCCCCC----------CC
Q ss_conf 823979999999999998661467767---------07997378855778999999861898531257----------64
Q gi|254780552|r 29 EFTGQVEACSNLKVFIEAAKARAEALD---------HVLFVGPPGLGKTTLAQVVARELGVNFRSTSG----------PV 89 (334)
Q Consensus 29 dviGQ~~~~~~l~~~i~a~~~~~~~~~---------h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~----------~~ 89 (334)
-+.|.+++|+.+.-++-.+ .|+ .+| ++||-|-|||.|.-+-+-+-+..-.. +.+|| ++
T Consensus 332 SIfG~~DiKkAiaClLFgG-srK-~LpDg~~lRGDINVLLLGDPgtAKSQlLKFvEkvsPIa-VYTSGKGSSAAGLTASV 408 (729)
T KOG0481 332 SIFGHEDIKKAIACLLFGG-SRK-RLPDGVTLRGDINVLLLGDPGTAKSQLLKFVEKVSPIA-VYTSGKGSSAAGLTASV 408 (729)
T ss_pred HHCCCHHHHHHHHHHHHCC-CCC-CCCCCCEECCCEEEEEECCCCHHHHHHHHHHHHCCCEE-EEECCCCCCCCCCEEEE
T ss_conf 2137346888888875357-533-27886446264028983698526899999998608637-99468876433462467
Q ss_pred CCCHHHHHHHH----HHHHCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCC--
Q ss_conf 43346766666----641016378887576169899999999863475100256787652000466740055204554--
Q gi|254780552|r 90 IAKAGDLAALL----TNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV-- 163 (334)
Q Consensus 90 ~~~~~dl~~~~----~~~~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~-- 163 (334)
+..+.--.-++ --+..|.|+.|||-+.+...---+.-.+||.-.|.|- ++- -+..++ .+-.+.+|.|-+
T Consensus 409 ~RD~~tReFylEGGAMVLADgGVvCIDEFDKMre~DRVAIHEAMEQQTISIA--KAG--ITT~LN-SRtSVLAAANpvfG 483 (729)
T KOG0481 409 IRDPSTREFYLEGGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIA--KAG--ITTTLN-SRTSVLAAANPVFG 483 (729)
T ss_pred EECCCCCEEEEECCEEEEECCCEEEEEHHHCCCCHHHHHHHHHHHHHHHHHH--HHC--CEEEEC-CHHHHHHHCCCCCC
T ss_conf 8668763389826659981697898300002582015689899876557775--505--225642-40334453378665
Q ss_pred -----------CCCCHHHHHCCCCEEECCC
Q ss_conf -----------3355454420120673264
Q gi|254780552|r 164 -----------GLLTNPLQDRFGIPIRLNF 182 (334)
Q Consensus 164 -----------~~l~~~l~sR~~~~~~~~~ 182 (334)
=..-+.++|||.++|-.+-
T Consensus 484 RyDd~Kt~~dNIDf~~TILSRFDmIFIVKD 513 (729)
T KOG0481 484 RYDDTKTGEDNIDFMPTILSRFDMIFIVKD 513 (729)
T ss_pred CCCCCCCCCCCCCHHHHHHHHCCEEEEEEC
T ss_conf 543467855563223467645137999833
No 309
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=97.16 E-value=0.00048 Score=44.26 Aligned_cols=53 Identities=26% Similarity=0.328 Sum_probs=35.1
Q ss_pred CCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 78987782397999999999999866146776707997378855778999999861
Q gi|254780552|r 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 (334)
Q Consensus 23 RP~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l 78 (334)
++-+++|+|.+.-+......++..+-..+ .+++..|+.|+||||+.+.+..++
T Consensus 116 ~~~tl~dlv~~g~~t~~~~~~L~~aV~~r---~nilVsGgTGSGKTTllnaL~~~i 168 (323)
T PRK13833 116 RLIPLDDYVRSKVMTEAQASTIRSAISSR---LNIVISGGTGSGKTTLANAVIAEI 168 (323)
T ss_pred CCCCHHHHHHCCCCCHHHHHHHHHHHHCC---CCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99999999876999999999999999818---968999177775689999999864
No 310
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit; InterPro: IPR006344 This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. C-terminal part of the protein matches a domain found in viral RNA helicase, superfamily 1, IPR000606 from INTERPRO. ; GO: 0008854 exodeoxyribonuclease V activity, 0009338 exodeoxyribonuclease V complex.
Probab=97.14 E-value=0.00041 Score=44.64 Aligned_cols=50 Identities=18% Similarity=0.255 Sum_probs=29.1
Q ss_pred CHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCCCCCC
Q ss_conf 3788875761698999999998634751002567876520004667400552045543355
Q gi|254780552|r 107 DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLT 167 (334)
Q Consensus 107 ~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~~~l~ 167 (334)
+||.|||+=+..=.-+.-|+.++....= ..|.+. ....|+|=.++.+.|.
T Consensus 351 DVLvvDEaSMVdl~lm~kL~~A~~~~~k--------~~KLy~---~~LIllGD~nQL~sve 400 (753)
T TIGR01447 351 DVLVVDEASMVDLPLMAKLLKALPPNTK--------DKKLYA---DRLILLGDKNQLPSVE 400 (753)
T ss_pred CEEEECCCHHCCHHHHHHHHHHCCCCCC--------CCCHHH---CCCCEECCCCCCCCCC
T ss_conf 5278706002267999999972263001--------320101---0200122678888754
No 311
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.11 E-value=0.00073 Score=43.13 Aligned_cols=43 Identities=26% Similarity=0.235 Sum_probs=26.5
Q ss_pred CEEEECCCCCCHHHHHHHHHHH---CCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 0799737885577899999986---18985312576443346766666
Q gi|254780552|r 56 HVLFVGPPGLGKTTLAQVVARE---LGVNFRSTSGPVIAKAGDLAALL 100 (334)
Q Consensus 56 h~Lf~GPpG~GKTtlA~iiA~~---l~~~~~~~s~~~~~~~~dl~~~~ 100 (334)
+.|..||||+|||++|.-++.+ -|-++..++ .-+.+.++..-.
T Consensus 1 stLi~G~pGsGKT~~a~qfl~~~a~~ge~~lyis--~eE~~~~l~~~~ 46 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVT--LEESPEELIENA 46 (187)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEE--ECCCHHHHHHHH
T ss_conf 9158768999999999999999987699789999--507999999999
No 312
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=97.11 E-value=0.00041 Score=44.69 Aligned_cols=53 Identities=34% Similarity=0.515 Sum_probs=39.7
Q ss_pred HHHHHCCCC---CHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 578750789---877823979999999999998661467767079973788557789999998618
Q gi|254780552|r 17 ADISLLRPR---TLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 (334)
Q Consensus 17 ~~~~~lRP~---~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~ 79 (334)
-.+...||- +++|+-=.+.++++|. +.+ + -+|..||||.||||+|..+|.-+.
T Consensus 233 ~EITavRPvvk~~ledY~L~dkl~eRL~---era--e-----GILIAG~PGaGKsTFaqAlAefy~ 288 (604)
T COG1855 233 WEITAVRPVVKLSLEDYGLSDKLKERLE---ERA--E-----GILIAGAPGAGKSTFAQALAEFYA 288 (604)
T ss_pred EEEEEEEEEEEEEHHHCCCCHHHHHHHH---HHH--C-----CEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 2899971369960554287989999988---641--6-----469956999974689999999998
No 313
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.09 E-value=0.002 Score=40.52 Aligned_cols=51 Identities=27% Similarity=0.338 Sum_probs=34.6
Q ss_pred CCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 898778239799999999999986614677670799737885577899999986189
Q gi|254780552|r 24 PRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80 (334)
Q Consensus 24 P~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~~ 80 (334)
+.+|+++-=.+.....++.++.. .. .=+||.||+|.||||+...+-++++.
T Consensus 56 ~~~L~~LG~~~~~~~~l~~~~~~--~~----GlilitGptGSGKtTtl~a~l~~~~~ 106 (264)
T cd01129 56 ILDLEKLGLKPENLEIFRKLLEK--PH----GIILVTGPTGSGKTTTLYSALSELNT 106 (264)
T ss_pred CCCHHHHCCCHHHHHHHHHHHHC--CC----CEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 57987957999999999999708--99----88999789999779999999986436
No 314
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=97.09 E-value=0.00091 Score=42.55 Aligned_cols=25 Identities=28% Similarity=0.508 Sum_probs=21.5
Q ss_pred CEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 0799737885577899999986189
Q gi|254780552|r 56 HVLFVGPPGLGKTTLAQVVARELGV 80 (334)
Q Consensus 56 h~Lf~GPpG~GKTtlA~iiA~~l~~ 80 (334)
++++.|+.|+||||+++.++.....
T Consensus 162 NilI~G~TgSGKTTll~aL~~~ip~ 186 (332)
T PRK13900 162 NIIISGGTSTGKTTFTNAALREIPA 186 (332)
T ss_pred CEEEECCCCCCHHHHHHHHHHCCCC
T ss_conf 1999888898899999999835895
No 315
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family; InterPro: IPR006001 This family of proteins includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases (IPR000577 from INTERPRO).; GO: 0016301 kinase activity, 0005975 carbohydrate metabolic process.
Probab=97.07 E-value=0.00039 Score=44.79 Aligned_cols=39 Identities=28% Similarity=0.567 Sum_probs=28.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHCC-----CCCCCCCCCCCCCHHHHH
Q ss_conf 79973788557789999998618-----985312576443346766
Q gi|254780552|r 57 VLFVGPPGLGKTTLAQVVARELG-----VNFRSTSGPVIAKAGDLA 97 (334)
Q Consensus 57 ~Lf~GPpG~GKTtlA~iiA~~l~-----~~~~~~s~~~~~~~~dl~ 97 (334)
+++-|+.||||||+|..+++.|+ ++|+. |-.+.-+.++.
T Consensus 1 ~VlmGvaG~GKs~~a~~l~~~lg~iyPd~~yie--GDdLHP~~Ni~ 44 (175)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGDIYPDAKYIE--GDDLHPAANIE 44 (175)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCC--CCCCCCHHHHH
T ss_conf 967602786288999999998543157887568--86667877798
No 316
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=97.07 E-value=0.00064 Score=43.47 Aligned_cols=53 Identities=26% Similarity=0.340 Sum_probs=35.0
Q ss_pred CCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 78987782397999999999999866146776707997378855778999999861
Q gi|254780552|r 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 (334)
Q Consensus 23 RP~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l 78 (334)
++-+++|++...-+-.....++..+-..+ .+++..|+.|+||||+.+.+.+++
T Consensus 121 ~~~tL~dlv~~G~~~~~~a~~L~~~V~~r---~nilI~G~TgsGKTTll~all~~i 173 (320)
T PRK13894 121 AIFTLDQYVERGIMTAEQREAIIAAVRAH---RNILVIGGTGSGKTTLVNAIINEM 173 (320)
T ss_pred CCCCHHHHHHCCCCCHHHHHHHHHHHHCC---CCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99999999876999999999999999728---758998588865689999998632
No 317
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.05 E-value=0.00034 Score=45.13 Aligned_cols=63 Identities=30% Similarity=0.389 Sum_probs=33.9
Q ss_pred EEEECCCCCCHHH-HHHHHHHH---CCCC---CCCCCC------------------C--CCCCHHHHHHHHHHHHCCCHH
Q ss_conf 7997378855778-99999986---1898---531257------------------6--443346766666641016378
Q gi|254780552|r 57 VLFVGPPGLGKTT-LAQVVARE---LGVN---FRSTSG------------------P--VIAKAGDLAALLTNLEDRDVL 109 (334)
Q Consensus 57 ~Lf~GPpG~GKTt-lA~iiA~~---l~~~---~~~~s~------------------~--~~~~~~dl~~~~~~~~~~~vl 109 (334)
+-|.||.|+|||| +|++-|.. .|.. ++.+.. | +.....|+...+..+...+++
T Consensus 351 ~AlvGpTGvGKTTT~aKlAa~~~~~~g~~~valit~DtyRiga~eQL~~y~~ilgvpv~~~~~~~~l~~~l~~l~~~~lv 430 (557)
T PRK12727 351 IALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRDYKLV 430 (557)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHHHCCCCEE
T ss_conf 78743777673117999999999973998189997266408799999999998397579828999999999983699989
Q ss_pred HHHHHHHCCH
Q ss_conf 8875761698
Q gi|254780552|r 110 FIDEIHRLSI 119 (334)
Q Consensus 110 fiDEihrl~~ 119 (334)
+||-+-+-.+
T Consensus 431 liDTaG~~~r 440 (557)
T PRK12727 431 LIDTAGMGQR 440 (557)
T ss_pred EEECCCCCCC
T ss_conf 9949998846
No 318
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=97.04 E-value=0.001 Score=42.22 Aligned_cols=162 Identities=20% Similarity=0.220 Sum_probs=73.0
Q ss_pred HHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHH-HHHHHHHCCCCCCCCCCCCCC-CHHH
Q ss_conf 78750789877823979999999999998661467767079973788557789-999998618985312576443-3467
Q gi|254780552|r 18 DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL-AQVVARELGVNFRSTSGPVIA-KAGD 95 (334)
Q Consensus 18 ~~~~lRP~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtl-A~iiA~~l~~~~~~~s~~~~~-~~~d 95 (334)
....++|+. -||-|-+...--+.+-.+-. ....++|+||||.|||.+ ...+-+++.++++.+|-+..+ .+.-
T Consensus 1464 ~~~vm~~~~--vVipt~dt~~~~~f~n~~ln----t~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t~T~s~ 1537 (3164)
T COG5245 1464 GERVMLRKE--VVIPTSDTGFVDSFSNEALN----TLRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCTMTPSK 1537 (3164)
T ss_pred HHHHCCCCC--EECCCCCCHHHHHHHHHHHH----CCCEEEEECCCCCCCCHHCCHHHHHHHHEEEEEEEECCCCCCHHH
T ss_conf 024304677--31245331319989999874----063499978999751011263666543001567751124577889
Q ss_pred HHHHH------HH----------HHCCCHHHHHHHHHCCHHH----HH---HHHHHHHCCCCCCCCCCCCCCCEEECCCC
Q ss_conf 66666------64----------1016378887576169899----99---99998634751002567876520004667
Q gi|254780552|r 96 LAALL------TN----------LEDRDVLFIDEIHRLSIIV----EE---ILYPAMEDFQLDLMVGEGPSARSVKINLS 152 (334)
Q Consensus 96 l~~~~------~~----------~~~~~vlfiDEihrl~~~~----q~---~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~ 152 (334)
+..+- .+ ..+.-|||.|||+ +++.- |+ .|.|.||.-.. . ..+...-++ +.
T Consensus 1538 ls~Ler~t~yy~~tg~~~l~PK~~vK~lVLFcDeIn-Lp~~~~y~~~~vI~FlR~l~e~QGf-w---~s~~~~wvT--I~ 1610 (3164)
T COG5245 1538 LSVLERETEYYPNTGVVRLYPKPVVKDLVLFCDEIN-LPYGFEYYPPTVIVFLRPLVERQGF-W---SSIAVSWVT--IC 1610 (3164)
T ss_pred HHHHHHHCEEECCCCEEEECCCCCHHHEEEEEECCC-CCCCCCCCCCCEEEEEHHHHHHCCC-C---CCHHHHHHH--HC
T ss_conf 999986401523688279766742132178731147-7420013897448862877875255-5---536665762--11
Q ss_pred CCEEEECCCCC---CCCCHH--HHHCCCCEEECCCCCHHHHHHHHH
Q ss_conf 40055204554---335545--442012067326454799999877
Q gi|254780552|r 153 RFTLIAATTRV---GLLTNP--LQDRFGIPIRLNFYEIEDLKTIVQ 193 (334)
Q Consensus 153 ~f~lI~ATt~~---~~l~~~--l~sR~~~~~~~~~~~~~el~~il~ 193 (334)
...+.||++.+ +.++-+ +.-| .....+.+++...|..|.+
T Consensus 1611 ~i~l~Gacnp~td~gRv~~~eRf~r~-~v~vf~~ype~~SL~~Iye 1655 (3164)
T COG5245 1611 GIILYGACNPGTDEGRVKYYERFIRK-PVFVFCCYPELASLRNIYE 1655 (3164)
T ss_pred CEEEECCCCCCCCCCCCCCHHHHHCC-CEEEEECCCCHHHHHHHHH
T ss_conf 35998368999996657527787468-3599962863344999999
No 319
>pfam00406 ADK Adenylate kinase.
Probab=97.03 E-value=0.00032 Score=45.35 Aligned_cols=26 Identities=38% Similarity=0.718 Sum_probs=22.2
Q ss_pred EECCCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 97378855778999999861898531
Q gi|254780552|r 59 FVGPPGLGKTTLAQVVARELGVNFRS 84 (334)
Q Consensus 59 f~GPpG~GKTtlA~iiA~~l~~~~~~ 84 (334)
|.||||+||+|.|+.+|+.++...++
T Consensus 1 i~G~PGsGKgTqa~~La~~~~~~~is 26 (186)
T pfam00406 1 LLGPPGAGKGTQAERIVQKYGIVHLS 26 (186)
T ss_pred CCCCCCCCHHHHHHHHHHHHCCEEEC
T ss_conf 91889898599999999985990676
No 320
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=97.02 E-value=0.0014 Score=41.46 Aligned_cols=14 Identities=57% Similarity=0.812 Sum_probs=12.8
Q ss_pred CEEEECCCCCCHHH
Q ss_conf 07997378855778
Q gi|254780552|r 56 HVLFVGPPGLGKTT 69 (334)
Q Consensus 56 h~Lf~GPpG~GKTt 69 (334)
-+++.||+|+||||
T Consensus 67 vvii~getGsGKTT 80 (845)
T COG1643 67 VVIIVGETGSGKTT 80 (845)
T ss_pred EEEEECCCCCCHHH
T ss_conf 89986799887587
No 321
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB; InterPro: IPR014149 This entry represents TrbB, a protein, which is encoded in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer . TrbB is a homologue of the vir system VirB11 ATPase , and the Flp pilus system ATPase TadA ..
Probab=97.01 E-value=0.0013 Score=41.65 Aligned_cols=46 Identities=35% Similarity=0.490 Sum_probs=32.6
Q ss_pred CHHHHCCHHHH----HHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 87782397999----999999999866146776707997378855778999999861
Q gi|254780552|r 26 TLEEFTGQVEA----CSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL 78 (334)
Q Consensus 26 ~l~dviGQ~~~----~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l 78 (334)
+|||||-..=. ...|..++.| |+ ++|..|--|+||||||+++=.+.
T Consensus 114 TLDdYV~~gimtaaQ~d~l~~Av~a---r~----NIlv~GGTGSGKTTLaNAlla~I 163 (315)
T TIGR02782 114 TLDDYVEAGIMTAAQRDVLREAVAA---RK----NILVVGGTGSGKTTLANALLAEI 163 (315)
T ss_pred CCHHHHHHCCCCHHHHHHHHHHHHH---CC----CEEEECCCCCCHHHHHHHHHHHH
T ss_conf 7077764044557899999999971---29----88998145885799999999988
No 322
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.99 E-value=0.00029 Score=45.56 Aligned_cols=31 Identities=32% Similarity=0.636 Sum_probs=23.1
Q ss_pred CEEEECCCCCCHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 07997378855778999999861898531257
Q gi|254780552|r 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 (334)
Q Consensus 56 h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~ 87 (334)
.++++||+|+||+|+.+.+-...+..+ ++|.
T Consensus 6 l~vlsgPSG~GKsTl~k~L~~~~~l~~-SVS~ 36 (191)
T COG0194 6 LIVLSGPSGVGKSTLVKALLEDDKLRF-SVSA 36 (191)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCEEE-EEEE
T ss_conf 999989988888999999986349379-9985
No 323
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB; InterPro: IPR010225 This entry represents HrpB, one of two related predicted DEAH-box ATP-dependent helicases of unknown function found in many proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti, designated HelO, has been studied but is not essential for growth and mutants have no obvious phenotype . HrpB is typically about 800 residues in length, while its paralog HrpA (IPR010222 from INTERPRO), also uncharacterised, is about 1300 amino acids long. Related characterised eukaryotic proteins are RNA helicases associated with pre-mRNA processing ..
Probab=96.99 E-value=0.0011 Score=42.09 Aligned_cols=80 Identities=33% Similarity=0.549 Sum_probs=43.7
Q ss_pred CCEEEECCCCCCHHH-----------------------------HHHHHHHHCCCCCCCCCCCCC---CCHH-----HH-
Q ss_conf 707997378855778-----------------------------999999861898531257644---3346-----76-
Q gi|254780552|r 55 DHVLFVGPPGLGKTT-----------------------------LAQVVARELGVNFRSTSGPVI---AKAG-----DL- 96 (334)
Q Consensus 55 ~h~Lf~GPpG~GKTt-----------------------------lA~iiA~~l~~~~~~~s~~~~---~~~~-----dl- 96 (334)
+.++|.-|||=|||| .|.=+|+++|-+.-.+-|-=+ +|++ ++
T Consensus 18 ~~vvL~APpGAGKsT~~PLaLL~~pW~~~~kIimLEPRRlAAR~~A~rlA~~LgE~VG~tVGyRvR~enkVs~~TRlEvV 97 (858)
T TIGR01970 18 PQVVLEAPPGAGKSTAVPLALLDAPWLIGGKIIMLEPRRLAARSAAQRLASQLGEEVGDTVGYRVRLENKVSARTRLEVV 97 (858)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCEEEE
T ss_conf 65064167224711058899766264348807874744789999999999970889886204057711325877545787
Q ss_pred -HHHHHHHHC-------CCHHHHHHHHH----------CCHHHHHHHHHHHHC--CCCCCC
Q ss_conf -666664101-------63788875761----------698999999998634--751002
Q gi|254780552|r 97 -AALLTNLED-------RDVLFIDEIHR----------LSIIVEEILYPAMED--FQLDLM 137 (334)
Q Consensus 97 -~~~~~~~~~-------~~vlfiDEihr----------l~~~~q~~Ll~~mE~--~~i~i~ 137 (334)
.+|+|.+=. =++|+.||+|+ |...+|+.|. || -||.+|
T Consensus 98 TEGiLTRMlQ~DP~L~GVg~liFDEFHERsL~aDLaLALaLdVQs~LR---dDPPLkil~M 155 (858)
T TIGR01970 98 TEGILTRMLQDDPELEGVGLLIFDEFHERSLDADLALALALDVQSALR---DDPPLKILIM 155 (858)
T ss_pred ECCHHHHHCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHC---CCCCCEEHHC
T ss_conf 232687740168884535232311022434678899999885334310---6864000000
No 324
>PRK00023 cmk cytidylate kinase; Provisional
Probab=96.95 E-value=0.00052 Score=44.04 Aligned_cols=29 Identities=38% Similarity=0.746 Sum_probs=25.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCC
Q ss_conf 79973788557789999998618985312
Q gi|254780552|r 57 VLFVGPPGLGKTTLAQVVARELGVNFRST 85 (334)
Q Consensus 57 ~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~ 85 (334)
+=.-||.|+||+|+|+.+|+.+|..|..+
T Consensus 7 IaIDGpagSGKST~ak~lA~~L~~~yldT 35 (225)
T PRK00023 7 IAIDGPAGSGKGTVAKILAKKLGFHYLDT 35 (225)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEECH
T ss_conf 99658986787899999999939887641
No 325
>pfam06144 DNA_pol3_delta DNA polymerase III, delta subunit. DNA polymerase III, delta subunit (EC 2.7.7.7) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalysed reaction. The delta subunit is also known as HolA.
Probab=96.94 E-value=0.0042 Score=38.46 Aligned_cols=58 Identities=17% Similarity=0.170 Sum_probs=50.8
Q ss_pred HCCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 2012067326454799999877765412101111111233202210156788777543
Q gi|254780552|r 172 DRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRV 229 (334)
Q Consensus 172 sR~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~Gd~R~AlnlLe~v 229 (334)
+..+.+..|.+++..++...++..++..|++++++|+.+|+.+.+||++.+-|-++..
T Consensus 113 ~k~~~~i~~~~~~~~~l~~wi~~~~~~~g~~i~~~a~~~L~~~~g~nl~~l~~EieKL 170 (172)
T pfam06144 113 KKKATVVECFTLKEEELIQWIQKRAKELGLKIEKDALQLLAEKVENNLLAIAQELEKL 170 (172)
T ss_pred HHCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_conf 8376699934898789999999999984999899999999999784899999999976
No 326
>PRK04040 adenylate kinase; Provisional
Probab=96.92 E-value=0.0013 Score=41.52 Aligned_cols=62 Identities=29% Similarity=0.416 Sum_probs=40.2
Q ss_pred CEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHH-HCCCHHHHHHHHHCCHHHHHHH
Q ss_conf 079973788557789999998618985312576443346766666641-0163788875761698999999
Q gi|254780552|r 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL-EDRDVLFIDEIHRLSIIVEEIL 125 (334)
Q Consensus 56 h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~~~~~~~~dl~~~~~~~-~~~~vlfiDEihrl~~~~q~~L 125 (334)
-++..|-||+||||+.+.+...+..++..+|- +|+- +.-+ +.+.|==-||+..|+...|.-|
T Consensus 4 ~VvvtGiPGvGKTTv~~~~~~~l~~~~~~vn~------G~~M--~e~A~~~glv~~RDemRkL~~~~q~~l 66 (189)
T PRK04040 4 VVVVTGVPGVGKTTVLNKALEKLKEDYKIVNF------GDVM--LEVAKEEGLVEHRDEMRKLPLEEQKEL 66 (189)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCEEEEH------HHHH--HHHHHHCCCCCCHHHHCCCCHHHHHHH
T ss_conf 89997589887899999999972358759867------7999--999998177347788747999999999
No 327
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=96.91 E-value=0.00068 Score=43.32 Aligned_cols=22 Identities=41% Similarity=0.757 Sum_probs=19.4
Q ss_pred CEEEECCCCCCHHHHHHHHHHH
Q ss_conf 0799737885577899999986
Q gi|254780552|r 56 HVLFVGPPGLGKTTLAQVVARE 77 (334)
Q Consensus 56 h~Lf~GPpG~GKTtlA~iiA~~ 77 (334)
.+.|.||.||||||+-|+||.-
T Consensus 31 f~vllGPSGcGKSTlLr~IAGL 52 (338)
T COG3839 31 FVVLLGPSGCGKSTLLRMIAGL 52 (338)
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999899988889999999688
No 328
>PRK07914 hypothetical protein; Reviewed
Probab=96.90 E-value=0.034 Score=32.91 Aligned_cols=176 Identities=13% Similarity=0.099 Sum_probs=109.2
Q ss_pred CCCCEEEECCCCCC-HHHHHHHHHHH------CCCCCCCCCCCCCCCHHHHHHHH--HHHHCCCHHHHHHHHHCCHHHHH
Q ss_conf 76707997378855-77899999986------18985312576443346766666--64101637888757616989999
Q gi|254780552|r 53 ALDHVLFVGPPGLG-KTTLAQVVARE------LGVNFRSTSGPVIAKAGDLAALL--TNLEDRDVLFIDEIHRLSIIVEE 123 (334)
Q Consensus 53 ~~~h~Lf~GPpG~G-KTtlA~iiA~~------l~~~~~~~s~~~~~~~~dl~~~~--~~~~~~~vlfiDEihrl~~~~q~ 123 (334)
+-|=.||||+=..= .-.+..++... -+.++..+.+... .++++.... +-+.++.+++|......++...+
T Consensus 4 pAPvyLi~G~E~~L~erav~~~~~~ar~~~~~~d~~~~~l~a~~~-~~~~l~~~~spSLFae~RlVvv~~~~~~~~~~~~ 82 (320)
T PRK07914 4 PSPLHLVLGDEELLVERAVAAVLRSARKRAGTADVPVDRLRAGDV-STYELAELLSPSLFAEERVVVLEAAAEAGKDAVA 82 (320)
T ss_pred CCCEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCC-CHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHH
T ss_conf 998799970819999999999999998503799843466214668-8889998718676688449998361102688999
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCC---CCCCCCHHHHHCCCCEEECCCC-CHHHHHHHHHHHHHHC
Q ss_conf 99998634751002567876520004667400552045---5433554544201206732645-4799999877765412
Q gi|254780552|r 124 ILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATT---RVGLLTNPLQDRFGIPIRLNFY-EIEDLKTIVQRGAKLT 199 (334)
Q Consensus 124 ~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt---~~~~l~~~l~sR~~~~~~~~~~-~~~el~~il~~~~~~~ 199 (334)
.|+.++.+- . +..+||.-.+ +--++...++.--..+..|.++ ...|+...+.+..+..
T Consensus 83 ~l~~yl~~p----------~--------~~t~LV~~h~gg~k~Kkl~~~lkk~ga~v~~~~~l~k~~e~~~~v~~e~~~~ 144 (320)
T PRK07914 83 LIESAAADL----------P--------AGTVLVVVHSGGGRAKALANQLRKLGAQVHPCARITKASERADFVRKEFRSL 144 (320)
T ss_pred HHHHHHCCC----------C--------CCEEEEEEECCCCHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 999985299----------9--------9808999705874046799999976998986556588689999999999985
Q ss_pred CCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 1011111112332022101567887775433345541588642778787654
Q gi|254780552|r 200 GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALL 251 (334)
Q Consensus 200 ~i~~~~~al~~ia~~s~Gd~R~AlnlLe~v~d~a~~~~~~~i~~~~~~~~l~ 251 (334)
|..++++|...|+...++|+|..-+-++.... ...+.||.+.|+....
T Consensus 145 g~~i~~~A~~~Lv~~vG~dl~eLaae~~qL~~----d~~g~It~~~V~~~~~ 192 (320)
T PRK07914 145 RVKVDDETVTALLDAVGSDIRELASACSQLVA----DTGGAVDAAAVRRYHS 192 (320)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----CCCCCCCHHHHHHHHC
T ss_conf 99999999999999986239999999999960----5799736999999928
No 329
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.89 E-value=0.0021 Score=40.27 Aligned_cols=102 Identities=29% Similarity=0.361 Sum_probs=56.0
Q ss_pred CHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCC---CCCCC------------
Q ss_conf 877823979999999999998661467767079973788557789999998618985312---57644------------
Q gi|254780552|r 26 TLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRST---SGPVI------------ 90 (334)
Q Consensus 26 ~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~---s~~~~------------ 90 (334)
+|++..........+..+++ +.+ +=+|++||.|.||||+-...-++++.+...+ .-|+-
T Consensus 236 ~l~~Lg~~~~~~~~~~~~~~--~p~----GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE~~~~gI~Q~qVN 309 (500)
T COG2804 236 DLEKLGMSPFQLARLLRLLN--RPQ----GLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPVEYQLPGINQVQVN 309 (500)
T ss_pred CHHHHCCCHHHHHHHHHHHH--CCC----EEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEECCEEEECCCCCEEECC
T ss_conf 88783899889999999972--897----089996899998899999999986278850898407804515985156314
Q ss_pred CCHH-HHHHHHHHH--HCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCC
Q ss_conf 3346-766666641--01637888757616989999999986347510
Q gi|254780552|r 91 AKAG-DLAALLTNL--EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 (334)
Q Consensus 91 ~~~~-dl~~~~~~~--~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~ 135 (334)
.+++ +....+.++ +..+|+.|.||.-. ..+ ++...+-..|.++
T Consensus 310 ~k~gltfa~~LRa~LRqDPDvImVGEIRD~-ETA-eiavqAalTGHLV 355 (500)
T COG2804 310 PKIGLTFARALRAILRQDPDVIMVGEIRDL-ETA-EIAVQAALTGHLV 355 (500)
T ss_pred CCCCCCHHHHHHHHHCCCCCEEEEECCCCH-HHH-HHHHHHHHCCCEE
T ss_conf 035997899999986659985998355778-899-9999998428867
No 330
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.88 E-value=0.00074 Score=43.11 Aligned_cols=20 Identities=50% Similarity=0.846 Sum_probs=18.0
Q ss_pred EEEECCCCCCHHHHHHHHHH
Q ss_conf 79973788557789999998
Q gi|254780552|r 57 VLFVGPPGLGKTTLAQVVAR 76 (334)
Q Consensus 57 ~Lf~GPpG~GKTtlA~iiA~ 76 (334)
+-|-||+||||||+-|+||.
T Consensus 34 ~tlLGPSGcGKTTlLR~IAG 53 (352)
T COG3842 34 VTLLGPSGCGKTTLLRMIAG 53 (352)
T ss_pred EEEECCCCCCHHHHHHHHHC
T ss_conf 99989988888999999967
No 331
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=96.87 E-value=0.0027 Score=39.62 Aligned_cols=53 Identities=23% Similarity=0.272 Sum_probs=33.1
Q ss_pred HHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 77823979999999999998661467767079973788557789999998618985
Q gi|254780552|r 27 LEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNF 82 (334)
Q Consensus 27 l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~~ 82 (334)
+.+..| +++.+..+.|.. .+.. +.+-.+|+.|.+||||+|+|..+|..||.+-
T Consensus 68 l~~~~~-~~~a~rY~~~r~-~r~~-~~pliILigGtsGvGKSTlA~~LA~rLgI~~ 120 (306)
T PRK04220 68 LIEKDY-EEIAEKYLLWRR-IRKS-KEPIIILIGGASGVGTSTIAFELASRLGIRS 120 (306)
T ss_pred HHHHCC-HHHHHHHHHHHH-HHCC-CCCEEEEEECCCCCCHHHHHHHHHHHHCCCE
T ss_conf 998440-999999999999-8536-9987999858998878999999999709883
No 332
>PRK09270 frcK putative fructose transport system kinase; Reviewed
Probab=96.86 E-value=0.0018 Score=40.80 Aligned_cols=25 Identities=44% Similarity=0.768 Sum_probs=21.6
Q ss_pred EE-EECCCCCCHHHHHHHHHHHCCCC
Q ss_conf 79-97378855778999999861898
Q gi|254780552|r 57 VL-FVGPPGLGKTTLAQVVARELGVN 81 (334)
Q Consensus 57 ~L-f~GPpG~GKTtlA~iiA~~l~~~ 81 (334)
++ +.||||+||||+|+.++..++..
T Consensus 36 lIgIaG~pGSGKSTlA~~l~~~L~~~ 61 (230)
T PRK09270 36 VVGIAGPPGAGKSTLAETLWEALSQQ 61 (230)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 99998999889999999999998623
No 333
>PRK10536 hypothetical protein; Provisional
Probab=96.86 E-value=0.013 Score=35.48 Aligned_cols=165 Identities=16% Similarity=0.170 Sum_probs=74.1
Q ss_pred HCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHC--C--CCCCCCCCCCCC-----
Q ss_conf 5078987782397999999999999866146776707997378855778999999861--8--985312576443-----
Q gi|254780552|r 21 LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL--G--VNFRSTSGPVIA----- 91 (334)
Q Consensus 21 ~lRP~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l--~--~~~~~~s~~~~~----- 91 (334)
.++|++. +|++.+..+ ..+ . + ++..||+|||||-+|-..|-++ . ++-+.+.-|..+
T Consensus 56 pi~pkt~----~Q~~yi~~i-------~~~-~-i--vf~~GpAGTGKT~lA~a~Al~~l~~~~~~kIIltRP~V~~ge~l 120 (262)
T PRK10536 56 PILARNE----AQLHYLKAI-------ESK-Q-L--IFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDL 120 (262)
T ss_pred CCCCCCH----HHHHHHHHH-------HHC-C-E--EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCC
T ss_conf 8678986----499999998-------619-8-3--99989998758999999999999858886899966787567666
Q ss_pred --CHHHHHHHHHHHHCCCHHHHHHHHH-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCCCCCCH
Q ss_conf --3467666666410163788875761-6989999999986347510025678765200046674005520455433554
Q gi|254780552|r 92 --KAGDLAALLTNLEDRDVLFIDEIHR-LSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTN 168 (334)
Q Consensus 92 --~~~dl~~~~~~~~~~~vlfiDEihr-l~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~~~l~~ 168 (334)
-|+|+...+.-.- -=|.|-++. +.+...+.++. -|.|+|-+ .|+.++=-.
T Consensus 121 GfLPGdl~EK~~Pyl---~Pi~D~L~~~lg~~~~~~~~~-~e~G~Iei---------------~PlafmRGr-------- 173 (262)
T PRK10536 121 GFLPGDIAEKFAPYF---RPVYDVLVRRLGASFMQYCLR-PEIGKVEI---------------APFAYMRGR-------- 173 (262)
T ss_pred CCCCCCHHHHHHHHH---HHHHHHHHHHHCHHHHHHHHH-HHCCCEEE---------------EEHHHHCCC--------
T ss_conf 769898799887888---789999999968599999987-30594899---------------875874477--------
Q ss_pred HHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHH-HHHCCCCCCHHHHHHHHH
Q ss_conf 54420120673264547999998777654121011111112-332022101567887775
Q gi|254780552|r 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAAC-EIAMRSRGTPRIAGRLLR 227 (334)
Q Consensus 169 ~l~sR~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~-~ia~~s~Gd~R~AlnlLe 227 (334)
.+-+-|-++-+.+..+.+++..++-|+.....+-+.-|.-. -+-...+.....+++.|+
T Consensus 174 Tf~na~IIvDEaQN~T~~qmk~iLTRiG~~SKiVi~GD~~Q~Dl~~~~~SGL~~~~~~l~ 233 (262)
T PRK10536 174 TFENAVVILDEAQNVTAAQMKMFLTRLGENVTVIVNGDITQCDLPRGVKSGLSDALERFE 233 (262)
T ss_pred CCCCEEEEEEHHHCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHC
T ss_conf 514428998412128999998898542599689996882022699999873999999956
No 334
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.86 E-value=0.0015 Score=41.14 Aligned_cols=31 Identities=32% Similarity=0.450 Sum_probs=22.1
Q ss_pred EEEECCCCCCHHHHHHHHHHH---CCCCCCCCCC
Q ss_conf 799737885577899999986---1898531257
Q gi|254780552|r 57 VLFVGPPGLGKTTLAQVVARE---LGVNFRSTSG 87 (334)
Q Consensus 57 ~Lf~GPpG~GKTtlA~iiA~~---l~~~~~~~s~ 87 (334)
++++||||+|||++|.-+|.+ .+.....+++
T Consensus 26 tei~G~pG~GKTtl~lq~a~~~~~~g~~vlYidt 59 (224)
T PRK09361 26 TQIYGPPGSGKTNICIQLAVEAARQGKKVIYIDT 59 (224)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 9998999985999999999999974990999678
No 335
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=96.85 E-value=0.0019 Score=40.62 Aligned_cols=38 Identities=39% Similarity=0.686 Sum_probs=25.8
Q ss_pred CCCCCE-EEECCCCCCHHHHHHHHHHHC-CCCCCCCCCCC
Q ss_conf 776707-997378855778999999861-89853125764
Q gi|254780552|r 52 EALDHV-LFVGPPGLGKTTLAQVVAREL-GVNFRSTSGPV 89 (334)
Q Consensus 52 ~~~~h~-Lf~GPpG~GKTtlA~iiA~~l-~~~~~~~s~~~ 89 (334)
+++|-+ -..|||||||||+-+.+-+.. +..+..+.||.
T Consensus 36 epPP~vVavvGPpgvGKtTLiksLvk~ytk~~l~~i~GPi 75 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGPI 75 (225)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCE
T ss_conf 9999699998989977889999999998544375578887
No 336
>PRK13808 adenylate kinase; Provisional
Probab=96.83 E-value=0.0011 Score=42.15 Aligned_cols=29 Identities=38% Similarity=0.677 Sum_probs=25.1
Q ss_pred CEEEECCCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 07997378855778999999861898531
Q gi|254780552|r 56 HVLFVGPPGLGKTTLAQVVARELGVNFRS 84 (334)
Q Consensus 56 h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~ 84 (334)
.++|.||||+||.|-|..|++.+|...++
T Consensus 2 rIIlLGPPGsGKGTQA~~L~~~~gi~hIS 30 (297)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQYGIVQLS 30 (297)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEEC
T ss_conf 59997899998589999999986988675
No 337
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.79 E-value=0.00085 Score=42.73 Aligned_cols=24 Identities=38% Similarity=0.701 Sum_probs=17.5
Q ss_pred CCCEEEECCCCCCHHH-HHHHHHHH
Q ss_conf 6707997378855778-99999986
Q gi|254780552|r 54 LDHVLFVGPPGLGKTT-LAQVVARE 77 (334)
Q Consensus 54 ~~h~Lf~GPpG~GKTt-lA~iiA~~ 77 (334)
...+=|.||.|+|||| +|++-|+-
T Consensus 241 ~q~IALVGPTGVGKTTTIAKLAArf 265 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQF 265 (436)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 7179998999988899999999998
No 338
>KOG1803 consensus
Probab=96.76 E-value=0.0014 Score=41.44 Aligned_cols=25 Identities=36% Similarity=0.775 Sum_probs=18.9
Q ss_pred CCEEEECCCCCCHHH-HHHHHHHHCC
Q ss_conf 707997378855778-9999998618
Q gi|254780552|r 55 DHVLFVGPPGLGKTT-LAQVVARELG 79 (334)
Q Consensus 55 ~h~Lf~GPpG~GKTt-lA~iiA~~l~ 79 (334)
.-++..||||||||. ++.+|...+.
T Consensus 202 ~l~~I~GPPGTGKT~TlvEiI~qlvk 227 (649)
T KOG1803 202 DLLIIHGPPGTGKTRTLVEIISQLVK 227 (649)
T ss_pred CCEEEECCCCCCCEEEHHHHHHHHHH
T ss_conf 83575579988840439999999997
No 339
>CHL00026 ycf2 Ycf2
Probab=96.75 E-value=0.012 Score=35.72 Aligned_cols=179 Identities=17% Similarity=0.183 Sum_probs=85.6
Q ss_pred CEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCC-C-CCH----------------------------------------
Q ss_conf 0799737885577899999986189853125764-4-334----------------------------------------
Q gi|254780552|r 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPV-I-AKA---------------------------------------- 93 (334)
Q Consensus 56 h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~~~-~-~~~---------------------------------------- 93 (334)
.+|+.||.|||..-|++-+|...-++++.++-.- + .++
T Consensus 1632 GILlIGsieTGRSYLVK~LAanSYvPlI~I~lnklL~nkp~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~t~~~~~~ 1711 (2286)
T CHL00026 1632 GILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELELLTMMNALT 1711 (2286)
T ss_pred CEEEECCCCCCHHHHHHHHHHCCCCCEEEECHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCHHHH
T ss_conf 52797887666689999877426374089638998413864345554333223332221001000000112000000344
Q ss_pred HH----HH--HH-----HHHHHCCCHHHHHHHHHCCHHHH-----HHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEE
Q ss_conf 67----66--66-----66410163788875761698999-----99999863475100256787652000466740055
Q gi|254780552|r 94 GD----LA--AL-----LTNLEDRDVLFIDEIHRLSIIVE-----EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLI 157 (334)
Q Consensus 94 ~d----l~--~~-----~~~~~~~~vlfiDEihrl~~~~q-----~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI 157 (334)
.| +. .+ ++..=..||+-|.-||.|+-.-- ..|+..+.... +.. .+ ....+|
T Consensus 1712 ~~~~~~i~~~~i~LqFELAk~MSPCIIWIpnIHeLnvnd~~~l~LglL~n~ls~d~------e~~--st-----rNilVI 1778 (2286)
T CHL00026 1712 MDMMPEIDRFYITLQFELAKAMSPCIIWIPNIHDLDVNESNYLSLGLLVNYLSRDC------ERC--ST-----RNILVI 1778 (2286)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCEEECCCHHHCCCCCCCHHHHHHHHHHHCCCC------CCC--CC-----CCEEEE
T ss_conf 43233334444578899987549807961767660567762146999999842564------334--52-----451899
Q ss_pred ECCCCCCCCCHHHHH--CCCCEEECCCCCHHHHH---HHHHHHHHHCCCHHHHHH--HHHHHCCCCC-CHHHHHHHHHHH
Q ss_conf 204554335545442--01206732645479999---987776541210111111--1233202210-156788777543
Q gi|254780552|r 158 AATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLK---TIVQRGAKLTGLAVTDEA--ACEIAMRSRG-TPRIAGRLLRRV 229 (334)
Q Consensus 158 ~ATt~~~~l~~~l~s--R~~~~~~~~~~~~~el~---~il~~~~~~~~i~~~~~a--l~~ia~~s~G-d~R~AlnlLe~v 229 (334)
|.|.-|.|+.|+|.+ |+.-++.++.+....-. -++-+ .-|+.++.+. +.......-| ++|+...+-.-+
T Consensus 1779 ASTHiPqKVDPALIaPNRLdt~IniR~l~ipQr~K~F~iLl~---tkGF~lek~~f~~n~FGS~T~GynaRDL~aL~NEa 1855 (2286)
T CHL00026 1779 ASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSY---TRGFHLEKKMFHTNGFGSITMGSNARDLVALTNEA 1855 (2286)
T ss_pred ECCCCCCCCCHHHCCCCCHHHHEEEHCCCCHHHHHHHHHEEE---CCCCEECCCCCCCCCCCCEECCCCHHHHHHHHHHH
T ss_conf 706787766811058530203112000466665414443000---35511125555546656400588778899986546
Q ss_pred HHHHHHHCCCCCCHHHHHHHH
Q ss_conf 334554158864277878765
Q gi|254780552|r 230 RDFAEVAHAKTITREIADAAL 250 (334)
Q Consensus 230 ~d~a~~~~~~~i~~~~~~~~l 250 (334)
.......+...|+.+.++-|+
T Consensus 1856 L~ISItq~KSiIdtnTIr~Al 1876 (2286)
T CHL00026 1856 LSISITQKKSIIDTNTIRSAL 1876 (2286)
T ss_pred HEEEEECCCCEEECCHHHHHH
T ss_conf 313330476354021288999
No 340
>PRK04328 hypothetical protein; Provisional
Probab=96.75 E-value=0.0036 Score=38.93 Aligned_cols=42 Identities=21% Similarity=0.190 Sum_probs=26.4
Q ss_pred CEEEECCCCCCHHHHHHHHHHHC---CCCCCCCCCCCCCCHHHHHHH
Q ss_conf 07997378855778999999861---898531257644334676666
Q gi|254780552|r 56 HVLFVGPPGLGKTTLAQVVAREL---GVNFRSTSGPVIAKAGDLAAL 99 (334)
Q Consensus 56 h~Lf~GPpG~GKTtlA~iiA~~l---~~~~~~~s~~~~~~~~dl~~~ 99 (334)
.+|+.||||||||++|.-++.+- |-++..++ .-+.+.++..-
T Consensus 26 ~~Lv~G~pGtGKT~la~qFl~~g~~~GE~~lyis--~eE~~~~l~~~ 70 (250)
T PRK04328 26 VVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVA--LEEHPVQVRRN 70 (250)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEE--EECCHHHHHHH
T ss_conf 9999828999989999999999987699779999--72799999999
No 341
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.74 E-value=0.0013 Score=41.58 Aligned_cols=22 Identities=50% Similarity=0.756 Sum_probs=19.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7997378855778999999861
Q gi|254780552|r 57 VLFVGPPGLGKTTLAQVVAREL 78 (334)
Q Consensus 57 ~Lf~GPpG~GKTtlA~iiA~~l 78 (334)
++++||||+||||++.-+|...
T Consensus 2 ~li~g~~g~GKttl~~~~~~~~ 23 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNI 23 (165)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 8999899998999999999998
No 342
>pfam05707 Zot Zonular occludens toxin (Zot). This family consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophages present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers
Probab=96.74 E-value=0.0018 Score=40.79 Aligned_cols=109 Identities=17% Similarity=0.170 Sum_probs=53.7
Q ss_pred EEEECCCCCCHHHHHHH--HHHHC--CCCCCCCCCCCC--CCH--------HH----H--HHHHHHHHCCCHHHHHHHHH
Q ss_conf 79973788557789999--99861--898531257644--334--------67----6--66666410163788875761
Q gi|254780552|r 57 VLFVGPPGLGKTTLAQV--VAREL--GVNFRSTSGPVI--AKA--------GD----L--AALLTNLEDRDVLFIDEIHR 116 (334)
Q Consensus 57 ~Lf~GPpG~GKTtlA~i--iA~~l--~~~~~~~s~~~~--~~~--------~d----l--~~~~~~~~~~~vlfiDEihr 116 (334)
.+++|.||+|||.-|-- |...+ |..+. +|=+.+ +.. .+ . ...-....++.+++|||+|+
T Consensus 3 ~litG~pGsGKS~~aV~~~i~~al~~GR~V~-tNI~gL~~~~~~~~~~~~~~~~~~~~~~~~~w~~~p~g~liViDE~~~ 81 (183)
T pfam05707 3 YLITGKPGSGKTLEAVSYHILPALKKGRKVI-TNIDGLNLERFPKVFGEDVRERLEDIGYMDPWRTYPKGALLVIDEAQT 81 (183)
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHCCCEEE-ECCCCCCCHHCCCCCCCCCCCCCCCCCCCHHHCCCCCCCEEEEECCHH
T ss_conf 9993599996229999999999987899899-878653522101223444543200001222331499987999989765
Q ss_pred CCHH-----HHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCCCCCCHHHHHCCCCEEECCCC
Q ss_conf 6989-----999999986347510025678765200046674005520455433554544201206732645
Q gi|254780552|r 117 LSII-----VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFY 183 (334)
Q Consensus 117 l~~~-----~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~~~l~~~l~sR~~~~~~~~~~ 183 (334)
+=+. .....+..++..+ -. -+-+|+.|..+..|...+|.++..+.++...
T Consensus 82 ~~~~r~~~~~~~~~i~~l~~HR------------H~-----G~DiiliTQ~~~~id~~ir~lve~~~~~~r~ 136 (183)
T pfam05707 82 WFPSRRGGDKVPPVLDAFSTHR------------HL-----GWDIILITQNPSKIDKQIRALVEHHVHCRRL 136 (183)
T ss_pred HCCCCCCCCCCCHHHHHHHHCC------------CC-----CCEEEEEECCHHHHHHHHHHHHCEEEEEEEC
T ss_conf 5488777888838999999807------------78-----8208999189799729999861489999953
No 343
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=96.72 E-value=0.0059 Score=37.57 Aligned_cols=23 Identities=30% Similarity=0.444 Sum_probs=19.7
Q ss_pred CCEEEECCCCCCHHHHHHHHHHH
Q ss_conf 70799737885577899999986
Q gi|254780552|r 55 DHVLFVGPPGLGKTTLAQVVARE 77 (334)
Q Consensus 55 ~h~Lf~GPpG~GKTtlA~iiA~~ 77 (334)
+-+++.|+.|||||-+-+.+++.
T Consensus 128 ~~~vl~G~TG~GKT~iL~~L~~~ 150 (311)
T TIGR03167 128 PLIVLGGMTGSGKTELLHALANA 150 (311)
T ss_pred CEEEEECCCCCCHHHHHHHHHHC
T ss_conf 76998788887789999999976
No 344
>pfam02562 PhoH PhoH-like protein. PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation.
Probab=96.70 E-value=0.0032 Score=39.23 Aligned_cols=137 Identities=24% Similarity=0.302 Sum_probs=64.0
Q ss_pred CCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHC--CCCCC--CCCCCCCC------
Q ss_conf 078987782397999999999999866146776707997378855778999999861--89853--12576443------
Q gi|254780552|r 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL--GVNFR--STSGPVIA------ 91 (334)
Q Consensus 22 lRP~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l--~~~~~--~~s~~~~~------ 91 (334)
++|++ ..|......+ .. + +.++..||+|||||.+|-..|-.+ +..+. .+.-|..+
T Consensus 2 I~P~~----~~Q~~~~~~l-------~~-~---~iv~~~GpAGtGKT~la~~~al~~l~~~~~~kiii~Rp~v~~g~~iG 66 (205)
T pfam02562 2 IKPKT----LGQKRYVEAI-------RK-N---DIVFGIGPAGTGKTYLAVAAAVDALKDGKVKRIILTRPAVEAGEKLG 66 (205)
T ss_pred CCCCC----HHHHHHHHHH-------HC-C---CEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCC
T ss_conf 87898----8899999997-------17-9---80799899986099999999999997189437999757712577545
Q ss_pred -CHHHHHHHHHHHHCCCHHHHHHHHH-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEE-ECCCCCCCCCH
Q ss_conf -3467666666410163788875761-69899999999863475100256787652000466740055-20455433554
Q gi|254780552|r 92 -KAGDLAALLTNLEDRDVLFIDEIHR-LSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLI-AATTRVGLLTN 168 (334)
Q Consensus 92 -~~~dl~~~~~~~~~~~vlfiDEihr-l~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI-~ATt~~~~l~~ 168 (334)
-|+|+...+.-.- .=+.|-++. +.+...+.| ++++++.+ .|..++ |-|
T Consensus 67 fLPG~~~eK~~p~~---~p~~d~l~~~~~~~~~~~l---~~~~~Ie~---------------~pl~~iRGrT-------- 117 (205)
T pfam02562 67 FLPGDLEEKVDPYL---RPLYDALYDMLGAEKVEKL---IERGVIEI---------------APLAYMRGRT-------- 117 (205)
T ss_pred CCCCCHHHHHHHHH---HHHHHHHHHHHCHHHHHHH---HHCCCEEE---------------CCHHHHCCCC--------
T ss_conf 58897899999999---9999999987289999999---97597566---------------1467655476--------
Q ss_pred HHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCHH
Q ss_conf 54420120673264547999998777654121011
Q gi|254780552|r 169 PLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAV 203 (334)
Q Consensus 169 ~l~sR~~~~~~~~~~~~~el~~il~~~~~~~~i~~ 203 (334)
+.+-|-++-+.+..+.+++..++-|+.+-..+-+
T Consensus 118 -f~n~~iIvDEaQN~t~~~lk~ilTRiG~~SK~vi 151 (205)
T pfam02562 118 -LNDAFIILDEAQNTTPEQMKMFLTRIGFNSKMVV 151 (205)
T ss_pred -CCCCEEEEECHHCCCHHHHHHHHHHCCCCCEEEE
T ss_conf -2568899972213999999999842179968999
No 345
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.69 E-value=0.0029 Score=39.44 Aligned_cols=21 Identities=38% Similarity=0.760 Sum_probs=18.1
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q ss_conf 799737885577899999986
Q gi|254780552|r 57 VLFVGPPGLGKTTLAQVVARE 77 (334)
Q Consensus 57 ~Lf~GPpG~GKTtlA~iiA~~ 77 (334)
+.|.||+||||||+-+.|-.-
T Consensus 30 ~vliGpSGsGKTTtLkMINrL 50 (309)
T COG1125 30 LVLIGPSGSGKTTTLKMINRL 50 (309)
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999878997578799999605
No 346
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=96.68 E-value=0.0055 Score=37.78 Aligned_cols=21 Identities=43% Similarity=0.525 Sum_probs=18.6
Q ss_pred CEEEECCCCCCHHHHHHHHHH
Q ss_conf 079973788557789999998
Q gi|254780552|r 56 HVLFVGPPGLGKTTLAQVVAR 76 (334)
Q Consensus 56 h~Lf~GPpG~GKTtlA~iiA~ 76 (334)
-+++.|+.|||||-+-+.+++
T Consensus 139 ~~vl~G~TG~GKT~lL~~L~~ 159 (333)
T PRK11784 139 LVVLGGMTGSGKTRLLQALAN 159 (333)
T ss_pred CEEEECCCCCCHHHHHHHHHH
T ss_conf 599867888778999999997
No 347
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.68 E-value=0.0015 Score=41.14 Aligned_cols=20 Identities=35% Similarity=0.426 Sum_probs=16.8
Q ss_pred CEEEECCCCCCHHHHHHHHH
Q ss_conf 07997378855778999999
Q gi|254780552|r 56 HVLFVGPPGLGKTTLAQVVA 75 (334)
Q Consensus 56 h~Lf~GPpG~GKTtlA~iiA 75 (334)
..|..|+|||||||+|.-+.
T Consensus 26 ~~LV~G~pGsGKTtla~QfL 45 (501)
T PRK09302 26 PTLVSGTAGTGKTLFALQFL 45 (501)
T ss_pred EEEEEECCCCCHHHHHHHHH
T ss_conf 79998389999999999999
No 348
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.68 E-value=0.0025 Score=39.84 Aligned_cols=26 Identities=42% Similarity=0.572 Sum_probs=20.3
Q ss_pred CCCCE-EEECCCCCCHHHHHHHHHHHC
Q ss_conf 76707-997378855778999999861
Q gi|254780552|r 53 ALDHV-LFVGPPGLGKTTLAQVVAREL 78 (334)
Q Consensus 53 ~~~h~-Lf~GPpG~GKTtlA~iiA~~l 78 (334)
....+ +++||||+||||++.-+|.+.
T Consensus 17 ~~G~it~i~G~pG~GKStl~lq~a~~~ 43 (218)
T cd01394 17 ERGTVTQVYGPPGTGKTNIAIQLAVET 43 (218)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 788799998999984999999999998
No 349
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.67 E-value=0.0014 Score=41.31 Aligned_cols=24 Identities=33% Similarity=0.545 Sum_probs=20.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 799737885577899999986189
Q gi|254780552|r 57 VLFVGPPGLGKTTLAQVVARELGV 80 (334)
Q Consensus 57 ~Lf~GPpG~GKTtlA~iiA~~l~~ 80 (334)
+.|+|.||+||||+|+.+.+.|..
T Consensus 10 iW~TGLsGSGKTTiA~~l~~~L~~ 33 (176)
T PRK05541 10 IWITGLAGSGKTTIAKALYERLKL 33 (176)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 997899999899999999999997
No 350
>PRK06217 hypothetical protein; Validated
Probab=96.67 E-value=0.0019 Score=40.61 Aligned_cols=131 Identities=18% Similarity=0.169 Sum_probs=65.2
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHH-HHHHHHCCC
Q ss_conf 7079973788557789999998618985312576443346766666641016378887576169899999-999863475
Q gi|254780552|r 55 DHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEI-LYPAMEDFQ 133 (334)
Q Consensus 55 ~h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~~~~~~~~dl~~~~~~~~~~~vlfiDEihrl~~~~q~~-Ll~~mE~~~ 133 (334)
..++..|.+|+||||+|+.+|..++.++..+.. .+=.+++.- ++ .+ + ++..... ++..++...
T Consensus 2 ~rI~i~G~sGsGkSTla~~La~~l~~~~~~lD~-~~W~p~~~p--f~-~k-R-----------~~~eR~~ll~~~~~~~~ 65 (185)
T PRK06217 2 MRIHITGASGSGTTTLGAALAEALDLPHLDTDD-FFWLPTDPP--FT-TK-R-----------EPEERLRLLLEDLRDSE 65 (185)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCEEECCC-CEECCCCCC--CC-CC-C-----------CHHHHHHHHHHHHHCCC
T ss_conf 679997899887899999999975989686455-535689997--56-43-7-----------99999999999863799
Q ss_pred CCCCCCCCCCCCEEECCCCCCEEEECCCCCCCCCHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHC
Q ss_conf 10025678765200046674005520455433554544201206732645479999987776541210111111123320
Q gi|254780552|r 134 LDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAM 213 (334)
Q Consensus 134 i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~~~l~~~l~sR~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~ 213 (334)
--|+-|... .-..++..||.++..+.-...--+..+.+|..+..+-.+-+.
T Consensus 66 ~WV~sGs~~----------------------~wgd~l~p~~DlvVfL~lP~~irl~Rlr~RE~~RyG~ri~pg------- 116 (185)
T PRK06217 66 GWILSGSLL----------------------GWGDPLEPLFDLVVFLYIPPELRLERLRLREEQRYGNRILPG------- 116 (185)
T ss_pred CEEEECCCC----------------------CCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHCCCCCCCC-------
T ss_conf 989957752----------------------323211343568999828989999999999998607866899-------
Q ss_pred CCCCCHHH-HHHHHHHHHHHH
Q ss_conf 22101567-887775433345
Q gi|254780552|r 214 RSRGTPRI-AGRLLRRVRDFA 233 (334)
Q Consensus 214 ~s~Gd~R~-AlnlLe~v~d~a 233 (334)
||+-. -...|+++.+|-
T Consensus 117 ---Gdm~~~~~~Fl~Wa~~YD 134 (185)
T PRK06217 117 ---GDMHKASLEFLEWAAQYD 134 (185)
T ss_pred ---CCHHHHHHHHHHHHHHCC
T ss_conf ---418888899999998678
No 351
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.66 E-value=0.0019 Score=40.55 Aligned_cols=23 Identities=43% Similarity=0.660 Sum_probs=20.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 79973788557789999998618
Q gi|254780552|r 57 VLFVGPPGLGKTTLAQVVARELG 79 (334)
Q Consensus 57 ~Lf~GPpG~GKTtlA~iiA~~l~ 79 (334)
+-+.||.|+||||+.++++..+.
T Consensus 29 ~~l~G~NGsGKTTl~~~l~G~~~ 51 (144)
T cd03221 29 IGLVGRNGAGKSTLLKLIAGELE 51 (144)
T ss_pred EEEECCCCCCHHHHHHHHHCCCC
T ss_conf 99998999849999999848988
No 352
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=96.62 E-value=0.0025 Score=39.89 Aligned_cols=72 Identities=31% Similarity=0.455 Sum_probs=39.2
Q ss_pred EEEECCCCCCHHH-----------------------------HHHHHHHHCCCCCCCCCCCCC--C-CH-----------
Q ss_conf 7997378855778-----------------------------999999861898531257644--3-34-----------
Q gi|254780552|r 57 VLFVGPPGLGKTT-----------------------------LAQVVARELGVNFRSTSGPVI--A-KA----------- 93 (334)
Q Consensus 57 ~Lf~GPpG~GKTt-----------------------------lA~iiA~~l~~~~~~~s~~~~--~-~~----------- 93 (334)
++..|..|||||| +|+-+|.|+|+++...-|-.+ + +.
T Consensus 92 vii~GeTGsGKTTQiPq~~le~g~g~~~~I~~TQPRRiAA~svA~RVA~E~~~~lG~~VGY~VRf~~~~s~~t~i~~~Td 171 (1295)
T PRK11131 92 VIVAGETGSGKTTQLPKICLELGRGIKGLIGHTQPRRLAARTVANRIAEELETELGGCVGYKVRFNDQVSDNTMVKLMTD 171 (1295)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCEEEEECC
T ss_conf 99976899987889999999627999998997796599999999999998199989988889456988799977999765
Q ss_pred HHH-HHHHH--HHHCCCHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf 676-66666--4101637888757616989999999986
Q gi|254780552|r 94 GDL-AALLT--NLEDRDVLFIDEIHRLSIIVEEILYPAM 129 (334)
Q Consensus 94 ~dl-~~~~~--~~~~~~vlfiDEihrl~~~~q~~Ll~~m 129 (334)
|-+ +.+.. .+..-++++|||+|+=+-.. |.||-.+
T Consensus 172 GiLL~e~~~d~~L~~y~~iIiDEaHERsl~~-D~LLg~L 209 (1295)
T PRK11131 172 GILLAEIQQDRLLMQYDTIIIDEAHERSLNI-DFILGYL 209 (1295)
T ss_pred HHHHHHHHHCCCCCCCCEEEEECCCCCCCHH-HHHHHHH
T ss_conf 6999986209987887779986855688019-9999999
No 353
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.61 E-value=0.0048 Score=38.12 Aligned_cols=24 Identities=33% Similarity=0.512 Sum_probs=21.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 799737885577899999986189
Q gi|254780552|r 57 VLFVGPPGLGKTTLAQVVARELGV 80 (334)
Q Consensus 57 ~Lf~GPpG~GKTtlA~iiA~~l~~ 80 (334)
+|+.||.|.||||+...+.++++.
T Consensus 4 iLitG~TGSGKTTtl~all~~i~~ 27 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYINK 27 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 999899999799999999985363
No 354
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.58 E-value=0.004 Score=38.64 Aligned_cols=25 Identities=32% Similarity=0.620 Sum_probs=21.8
Q ss_pred CEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 0799737885577899999986189
Q gi|254780552|r 56 HVLFVGPPGLGKTTLAQVVARELGV 80 (334)
Q Consensus 56 h~Lf~GPpG~GKTtlA~iiA~~l~~ 80 (334)
++++.|+.|+||||+.+.+..++..
T Consensus 164 NIlIsGgTGSGKTTllnALl~~IP~ 188 (343)
T PRK13851 164 TMLLCGPTGSGKTTMSKTLISAIPP 188 (343)
T ss_pred CEEEECCCCCCHHHHHHHHHHCCCC
T ss_conf 8999888986199999999962896
No 355
>pfam05729 NACHT NACHT domain. This NTPase domain is found in apoptosis proteins as well as those involved in MHC transcription activation. This family is closely related to pfam00931.
Probab=96.58 E-value=0.0019 Score=40.61 Aligned_cols=22 Identities=45% Similarity=0.533 Sum_probs=19.5
Q ss_pred CEEEECCCCCCHHHHHHHHHHH
Q ss_conf 0799737885577899999986
Q gi|254780552|r 56 HVLFVGPPGLGKTTLAQVVARE 77 (334)
Q Consensus 56 h~Lf~GPpG~GKTtlA~iiA~~ 77 (334)
.+++.|+||+||||+++-+|..
T Consensus 2 ~i~i~G~aG~GKTtll~kl~~~ 23 (165)
T pfam05729 2 TVILQGEAGSGKTTLLQKLALL 23 (165)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999827989899999999999
No 356
>PRK04182 cytidylate kinase; Provisional
Probab=96.58 E-value=0.002 Score=40.51 Aligned_cols=29 Identities=45% Similarity=0.830 Sum_probs=25.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCC
Q ss_conf 79973788557789999998618985312
Q gi|254780552|r 57 VLFVGPPGLGKTTLAQVVARELGVNFRST 85 (334)
Q Consensus 57 ~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~ 85 (334)
+-+.||+|+||||+|+.+|+.||.+|...
T Consensus 3 ItI~g~~GSGk~tIak~LA~~lg~~~~d~ 31 (178)
T PRK04182 3 ITISGPPGSGKTTVARLLAEKLGLKLVSA 31 (178)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCEEECH
T ss_conf 99958998887999999999959938721
No 357
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.55 E-value=0.0023 Score=40.10 Aligned_cols=27 Identities=22% Similarity=0.477 Sum_probs=22.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 799737885577899999986189853
Q gi|254780552|r 57 VLFVGPPGLGKTTLAQVVARELGVNFR 83 (334)
Q Consensus 57 ~Lf~GPpG~GKTtlA~iiA~~l~~~~~ 83 (334)
++++||+|+||||+++.+.++....|.
T Consensus 10 ivisGPSG~GK~tl~~~L~~~~p~~~~ 36 (208)
T PRK00300 10 IVLSAPSGAGKSTLVRALLERDPNDLQ 36 (208)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCEE
T ss_conf 999999988999999999972998689
No 358
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.52 E-value=0.0015 Score=41.27 Aligned_cols=22 Identities=45% Similarity=0.741 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7997378855778999999861
Q gi|254780552|r 57 VLFVGPPGLGKTTLAQVVAREL 78 (334)
Q Consensus 57 ~Lf~GPpG~GKTtlA~iiA~~l 78 (334)
+-+.||.|+||||+.++|+..+
T Consensus 28 v~ilGpNGaGKSTllk~i~G~l 49 (177)
T cd03222 28 IGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9998999999999999996886
No 359
>COG3378 Phage associated DNA primase [General function prediction only]
Probab=96.50 E-value=0.005 Score=38.01 Aligned_cols=141 Identities=22% Similarity=0.245 Sum_probs=72.8
Q ss_pred CHHHHCC-HHHHHHHHHHHHHHHHHCCCC-CCCEEEECCCCCCHHHHHHHHHHHCCCCC-CCCCCCCCC----CHHHHHH
Q ss_conf 8778239-799999999999986614677-67079973788557789999998618985-312576443----3467666
Q gi|254780552|r 26 TLEEFTG-QVEACSNLKVFIEAAKARAEA-LDHVLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIA----KAGDLAA 98 (334)
Q Consensus 26 ~l~dviG-Q~~~~~~l~~~i~a~~~~~~~-~~h~Lf~GPpG~GKTtlA~iiA~~l~~~~-~~~s~~~~~----~~~dl~~ 98 (334)
-|+++.+ +.++...+..++-+....... -.-++|+||-|.||.|+..+|.+-+|-.- .+.+...+. .+-++..
T Consensus 200 ~L~~~~~~d~el~~ll~~i~g~~l~g~~~~~k~~~l~G~G~nGKstf~~li~~llG~~n~~s~~~~~~~~~~~~~~~~A~ 279 (517)
T COG3378 200 WLDRVAGGDPELRNLLQRIIGASLTGRVSEQKLFWLYGPGGNGKSTFVDLISNLLGRYNVTSAPLTDLEADDRHPFGLAA 279 (517)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHEECCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCHHCCCCHHHHHHHCCCCCHHHH
T ss_conf 99876157888999999997660067534004799976899873899999999845421103628877532048633887
Q ss_pred HHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCC-CCCCCCC-----EEECCCCCCEEEECCCCCCCC---CHH
Q ss_conf 6664101637888757616989999999986347510025-6787652-----000466740055204554335---545
Q gi|254780552|r 99 LLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMV-GEGPSAR-----SVKINLSRFTLIAATTRVGLL---TNP 169 (334)
Q Consensus 99 ~~~~~~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~-~~~~~a~-----~~~~~~~~f~lI~ATt~~~~l---~~~ 169 (334)
++ ...++..+|.. +..+. ..+.+--++ |.--.++ .++. .+.+++|.|||.++++ ..+
T Consensus 280 Lv----g~~~v~~~E~~------kg~l~---~~~~lK~ltgGD~i~a~~K~kd~~~f-~p~a~~i~~~N~~P~~~~~d~a 345 (517)
T COG3378 280 LV----GKRLVTVSETE------KGRLD---DEGKLKALTGGDVISAERKRKDFFSF-TPNAKLIQATNHPPRIRGDDEA 345 (517)
T ss_pred HH----CCEEEEECCCC------CCCCC---CCCCEEEECCCCEEEEHHCCCCCEEE-CCCEEEEEECCCCCCCCCCCHH
T ss_conf 61----75578704765------33003---55663664258703201105784475-1451788732889721364154
Q ss_pred HHHCCCCEEECC
Q ss_conf 442012067326
Q gi|254780552|r 170 LQDRFGIPIRLN 181 (334)
Q Consensus 170 l~sR~~~~~~~~ 181 (334)
+-.|..++ .|.
T Consensus 346 i~rR~~iv-pF~ 356 (517)
T COG3378 346 IWRRLLIV-PFE 356 (517)
T ss_pred HHHEEEEE-ECC
T ss_conf 23225787-556
No 360
>PRK03846 adenylylsulfate kinase; Provisional
Probab=96.49 E-value=0.0025 Score=39.89 Aligned_cols=33 Identities=36% Similarity=0.518 Sum_probs=23.8
Q ss_pred CCE-EEECCCCCCHHHHHHHHHHHC---CCCCCCCCC
Q ss_conf 707-997378855778999999861---898531257
Q gi|254780552|r 55 DHV-LFVGPPGLGKTTLAQVVAREL---GVNFRSTSG 87 (334)
Q Consensus 55 ~h~-Lf~GPpG~GKTtlA~iiA~~l---~~~~~~~s~ 87 (334)
+.+ -|+|.||.||||+|+.+.+.+ +.+...+.|
T Consensus 24 g~viWlTGLSGSGKTTlA~~L~~~L~~~~~~~~~LDG 60 (198)
T PRK03846 24 GVVLWFTGLSGSGKSTVAGALEEALHELGVHTYLLDG 60 (198)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECH
T ss_conf 8699987999998899999999999975997599777
No 361
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=96.49 E-value=0.006 Score=37.54 Aligned_cols=27 Identities=41% Similarity=0.680 Sum_probs=23.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 799737885577899999986189853
Q gi|254780552|r 57 VLFVGPPGLGKTTLAQVVARELGVNFR 83 (334)
Q Consensus 57 ~Lf~GPpG~GKTtlA~iiA~~l~~~~~ 83 (334)
+|+-|+||+||||+|.-+|..||....
T Consensus 92 ILIGGasGVGkStIA~ElA~rLgI~~v 118 (299)
T COG2074 92 ILIGGASGVGKSTIAGELARRLGIRSV 118 (299)
T ss_pred EEECCCCCCCHHHHHHHHHHHCCCCEE
T ss_conf 996178877725799999997298610
No 362
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.49 E-value=0.0022 Score=40.18 Aligned_cols=22 Identities=32% Similarity=0.841 Sum_probs=20.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7997378855778999999861
Q gi|254780552|r 57 VLFVGPPGLGKTTLAQVVAREL 78 (334)
Q Consensus 57 ~Lf~GPpG~GKTtlA~iiA~~l 78 (334)
++++|-||+||||+|+-+++.+
T Consensus 2 ivl~GlP~SGKSt~a~~L~~~l 23 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELSKKL 23 (249)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 7896789998999999999999
No 363
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.48 E-value=0.0023 Score=40.09 Aligned_cols=22 Identities=50% Similarity=0.641 Sum_probs=16.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7997378855778999999861
Q gi|254780552|r 57 VLFVGPPGLGKTTLAQVVAREL 78 (334)
Q Consensus 57 ~Lf~GPpG~GKTtlA~iiA~~l 78 (334)
++|.||+|+||||.+-=+|..+
T Consensus 3 i~lvGptGvGKTTTiaKLA~~~ 24 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYL 24 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998899999999999
No 364
>COG1466 HolA DNA polymerase III, delta subunit [DNA replication, recombination, and repair]
Probab=96.48 E-value=0.052 Score=31.82 Aligned_cols=74 Identities=18% Similarity=0.187 Sum_probs=63.1
Q ss_pred CEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 06732645479999987776541210111111123320221015678877754333455415886427787876542
Q gi|254780552|r 176 IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 (334)
Q Consensus 176 ~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~Gd~R~AlnlLe~v~d~a~~~~~~~i~~~~~~~~l~~ 252 (334)
.+..+.+++..++.+.+.+.++..|++++++|+..++...+||.+.+-+-++...-| .+++.|+.+.++.+...
T Consensus 133 ~~~~~~~~~~~~l~~~i~~~~~~~~l~i~~~a~~~L~~~~~~nl~~i~~Ei~KL~l~---~~~~~I~~~~V~~~v~~ 206 (334)
T COG1466 133 VVVECKPLDEAELPQWIKKRAKELGLKIDQEAIQLLLEALGGNLLAIAQEIEKLALY---AGDKEITLEDVEEVVSD 206 (334)
T ss_pred CEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHH---CCCCCCCHHHHHHHHCC
T ss_conf 346625887788999999999991898899999999998588299999999999874---78986679999999736
No 365
>pfam05970 DUF889 PIF1 helicase. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated.
Probab=96.47 E-value=0.0019 Score=40.53 Aligned_cols=69 Identities=20% Similarity=0.157 Sum_probs=37.5
Q ss_pred CCCCCCHHHHHHHHHHHCC---CCCCC----------C-CCCCCC---C-----HHH-HHH------HHHHHHCCCHHHH
Q ss_conf 3788557789999998618---98531----------2-576443---3-----467-666------6664101637888
Q gi|254780552|r 61 GPPGLGKTTLAQVVARELG---VNFRS----------T-SGPVIA---K-----AGD-LAA------LLTNLEDRDVLFI 111 (334)
Q Consensus 61 GPpG~GKTtlA~iiA~~l~---~~~~~----------~-s~~~~~---~-----~~d-l~~------~~~~~~~~~vlfi 111 (334)
||.|||||++-+.|.+.+. ..+.. + +|..+. + ..+ ... .......-++|+|
T Consensus 1 G~AGTGKS~ll~~i~~~l~~~~~~v~vtA~TGiAA~~i~gG~TiHs~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~vLII 80 (418)
T pfam05970 1 GYGGTGKTFLWNALSARIRSRGKIVLNVASSGIAALLLPGGRTAHSRFGIPLDIDEDSTCKIKRGSKLAELLKKASLIIW 80 (418)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCEEEEECCHHHHHHCCCCCEEHHHCCCCCCCCCCCCCEEECCCHHHHHHHHHCCEEEE
T ss_conf 97988799999999999976898899989689998516998739852698988774201121337788998740879998
Q ss_pred HHHHHCCHHHHHHHHHHH
Q ss_conf 757616989999999986
Q gi|254780552|r 112 DEIHRLSIIVEEILYPAM 129 (334)
Q Consensus 112 DEihrl~~~~q~~Ll~~m 129 (334)
|||-+++....|.+-..+
T Consensus 81 DEiSMv~~~lfd~id~~l 98 (418)
T pfam05970 81 DEAPMTHRHCFEALDRTL 98 (418)
T ss_pred ECCCCCCHHHHHHHHHHH
T ss_conf 541135789999999999
No 366
>pfam01583 APS_kinase Adenylylsulphate kinase. Enzyme that catalyses the phosphorylation of adenylylsulphate to 3'-phosphoadenylylsulfate. This domain contains an ATP binding P-loop motif.
Probab=96.45 E-value=0.0025 Score=39.88 Aligned_cols=23 Identities=43% Similarity=0.655 Sum_probs=20.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 79973788557789999998618
Q gi|254780552|r 57 VLFVGPPGLGKTTLAQVVARELG 79 (334)
Q Consensus 57 ~Lf~GPpG~GKTtlA~iiA~~l~ 79 (334)
+-|+|.||.||||+|+.+.+.|.
T Consensus 5 iW~TGLsGsGKTTlA~~l~~~L~ 27 (157)
T pfam01583 5 VWFTGLSGSGKSTIANALERKLF 27 (157)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99889899999999999999999
No 367
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=96.43 E-value=0.0024 Score=39.92 Aligned_cols=22 Identities=36% Similarity=0.575 Sum_probs=18.7
Q ss_pred CEEEECCCCCCHHHHHHHHHHH
Q ss_conf 0799737885577899999986
Q gi|254780552|r 56 HVLFVGPPGLGKTTLAQVVARE 77 (334)
Q Consensus 56 h~Lf~GPpG~GKTtlA~iiA~~ 77 (334)
+++..||+||||||+-|+||.-
T Consensus 421 ~llI~G~SG~GKTsLlRaiaGL 442 (604)
T COG4178 421 RLLITGESGAGKTSLLRALAGL 442 (604)
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 7998789998788999999645
No 368
>pfam03969 AFG1_ATPase AFG1-like ATPase. This family of proteins contains a P-loop motif and are predicted to be ATPases.
Probab=96.41 E-value=0.0063 Score=37.41 Aligned_cols=28 Identities=25% Similarity=0.262 Sum_probs=22.6
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 7670799737885577899999986189
Q gi|254780552|r 53 ALDHVLFVGPPGLGKTTLAQVVARELGV 80 (334)
Q Consensus 53 ~~~h~Lf~GPpG~GKTtlA~iiA~~l~~ 80 (334)
++..+-+||+.|+|||.|--+.-..+..
T Consensus 60 ~~kGlYl~G~VGrGKTmLMDlFy~~lp~ 87 (361)
T pfam03969 60 PVRGLYLWGGVGRGKTHLMDSFFESLPG 87 (361)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 9986898899888699999999986775
No 369
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein; InterPro: IPR005670 This is a family of phosphate transport system permease proteins.; GO: 0005315 inorganic phosphate transmembrane transporter activity, 0015114 phosphate transmembrane transporter activity, 0006817 phosphate transport, 0016020 membrane.
Probab=96.41 E-value=0.0018 Score=40.70 Aligned_cols=45 Identities=36% Similarity=0.622 Sum_probs=31.2
Q ss_pred CCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 9877823979999999999998661467767079973788557789999998
Q gi|254780552|r 25 RTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76 (334)
Q Consensus 25 ~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~ 76 (334)
++|+=+.|+.++++.+..-|. +++ + .=|-||+||||+|+-|.|=+
T Consensus 5 ~nl~~~YG~~~AL~~i~~~I~----~n~-v--TAlIGPSGCGKSTlLR~lNR 49 (248)
T TIGR00972 5 RNLSLFYGEKEALKNINLDIP----KNQ-V--TALIGPSGCGKSTLLRSLNR 49 (248)
T ss_pred EEEEEEECCEEEEECCCCEEC----CCE-E--EEEECCCCCCHHHHHHHHHH
T ss_conf 641266164178621562003----770-5--89877889867899999887
No 370
>TIGR02142 modC_ABC molybdate ABC transporter, ATP-binding protein; InterPro: IPR011868 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulphate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulphate transporter rather than by a specific molybdate transporter.; GO: 0005524 ATP binding, 0015098 molybdate ion transmembrane transporter activity, 0015689 molybdate ion transport, 0009276 1-2nm peptidoglycan-based cell wall.
Probab=96.39 E-value=0.0018 Score=40.68 Aligned_cols=19 Identities=42% Similarity=0.627 Sum_probs=17.0
Q ss_pred EECCCCCCHHHHHHHHHHH
Q ss_conf 9737885577899999986
Q gi|254780552|r 59 FVGPPGLGKTTLAQVVARE 77 (334)
Q Consensus 59 f~GPpG~GKTtlA~iiA~~ 77 (334)
++|+.|+||||+-|+||.-
T Consensus 28 lFG~SGsGKTtli~~iaGL 46 (361)
T TIGR02142 28 LFGRSGSGKTTLIRLIAGL 46 (361)
T ss_pred EECCCCCHHHHHHHHHHHC
T ss_conf 1258997078999998731
No 371
>pfam00485 PRK Phosphoribulokinase / Uridine kinase family. In Arabidopsis the region carries two binding domains, a phosphoribosylpyrophosphate-binding domain and, at the very C-terminus, a uracil-binding domain.
Probab=96.39 E-value=0.003 Score=39.35 Aligned_cols=26 Identities=31% Similarity=0.409 Sum_probs=22.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 79973788557789999998618985
Q gi|254780552|r 57 VLFVGPPGLGKTTLAQVVARELGVNF 82 (334)
Q Consensus 57 ~Lf~GPpG~GKTtlA~iiA~~l~~~~ 82 (334)
+-..||+|+||||+|+.|++.++..-
T Consensus 2 IgIaG~SgSGKTT~a~~L~~~l~~~~ 27 (196)
T pfam00485 2 IGVAGSSGAGKTTVARTFVSIFGREG 27 (196)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCC
T ss_conf 89989985719999999999966058
No 372
>pfam06414 Zeta_toxin Zeta toxin. This family consists of several bacterial zeta toxin proteins. Zeta toxin is thought to be part of a postregulational killing system in bacteria. It relies on antitoxin/toxin systems that secure stable inheritance of low and medium copy number plasmids during cell division and kill cells that have lost the plasmid.
Probab=96.39 E-value=0.004 Score=38.59 Aligned_cols=35 Identities=40% Similarity=0.487 Sum_probs=27.4
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHCC-CCCCCCCC
Q ss_conf 767079973788557789999998618-98531257
Q gi|254780552|r 53 ALDHVLFVGPPGLGKTTLAQVVARELG-VNFRSTSG 87 (334)
Q Consensus 53 ~~~h~Lf~GPpG~GKTtlA~iiA~~l~-~~~~~~s~ 87 (334)
.+.-+++-|+||.|||++++.+..+++ .+++.+++
T Consensus 11 ~Pkai~laG~pGAGKS~~~~~~~~~~~~~~~v~In~ 46 (191)
T pfam06414 11 RPVAVLLGGQPGAGKTELARALLEELGGGNVVRIDP 46 (191)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCCCCCEEECC
T ss_conf 987999957998888999999987537899389713
No 373
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=96.39 E-value=0.0022 Score=40.14 Aligned_cols=21 Identities=48% Similarity=0.735 Sum_probs=18.8
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q ss_conf 799737885577899999986
Q gi|254780552|r 57 VLFVGPPGLGKTTLAQVVARE 77 (334)
Q Consensus 57 ~Lf~GPpG~GKTtlA~iiA~~ 77 (334)
+-+.||.||||||+.|+||.-
T Consensus 35 ~~llGpSG~GKTTlLr~iaGl 55 (351)
T PRK11432 35 VTLLGPSGCGKTTVLRLVAGL 55 (351)
T ss_pred EEEECCCCCHHHHHHHHHHCC
T ss_conf 999999964999999999769
No 374
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=96.37 E-value=0.0033 Score=39.09 Aligned_cols=27 Identities=30% Similarity=0.445 Sum_probs=23.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 799737885577899999986189853
Q gi|254780552|r 57 VLFVGPPGLGKTTLAQVVARELGVNFR 83 (334)
Q Consensus 57 ~Lf~GPpG~GKTtlA~iiA~~l~~~~~ 83 (334)
+...||-|+||||+|+.+|+.+|..+.
T Consensus 2 I~IEGnIG~GKTTl~~~La~~l~~~~~ 28 (219)
T cd02030 2 ITVDGNIASGKGKLAKELAEKLGMKYF 28 (219)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCC
T ss_conf 899678567999999999998598210
No 375
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.35 E-value=0.0054 Score=37.81 Aligned_cols=43 Identities=33% Similarity=0.326 Sum_probs=27.3
Q ss_pred CEEEECCCCCCHHHHHHHHHHHC---CCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 07997378855778999999861---8985312576443346766666
Q gi|254780552|r 56 HVLFVGPPGLGKTTLAQVVAREL---GVNFRSTSGPVIAKAGDLAALL 100 (334)
Q Consensus 56 h~Lf~GPpG~GKTtlA~iiA~~l---~~~~~~~s~~~~~~~~dl~~~~ 100 (334)
.++.+|+||||||++|.-.+.+. |.++..++- -+.+.++....
T Consensus 25 ~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~--~e~~~~l~~~~ 70 (260)
T COG0467 25 VVLITGPPGTGKTIFALQFLYEGAREGEPVLYVST--EESPEELLENA 70 (260)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEE--ECCHHHHHHHH
T ss_conf 89999389986899999999977626985899992--06989999999
No 376
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=96.33 E-value=0.0038 Score=38.74 Aligned_cols=27 Identities=30% Similarity=0.575 Sum_probs=23.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 799737885577899999986189853
Q gi|254780552|r 57 VLFVGPPGLGKTTLAQVVARELGVNFR 83 (334)
Q Consensus 57 ~Lf~GPpG~GKTtlA~iiA~~l~~~~~ 83 (334)
+|+.|.|||||+|+|..+|..+|..-.
T Consensus 6 iligG~sGvGKStla~~lA~rlgi~~v 32 (197)
T PRK12339 6 HFIGGIPGVGKTSISGYIARHRAIDIV 32 (197)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCEE
T ss_conf 998579988789999999997499755
No 377
>KOG3354 consensus
Probab=96.33 E-value=0.0035 Score=38.97 Aligned_cols=30 Identities=30% Similarity=0.635 Sum_probs=26.7
Q ss_pred CEEEECCCCCCHHHHHHHHHHHCCCCCCCC
Q ss_conf 079973788557789999998618985312
Q gi|254780552|r 56 HVLFVGPPGLGKTTLAQVVARELGVNFRST 85 (334)
Q Consensus 56 h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~ 85 (334)
-++.-|+.|+||+|++..++++++++|..-
T Consensus 14 ~i~vmGvsGsGKSTigk~L~~~l~~~F~dg 43 (191)
T KOG3354 14 VIVVMGVSGSGKSTIGKALSEELGLKFIDG 43 (191)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHCCCCCCC
T ss_conf 599983588774459999999858862455
No 378
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=96.33 E-value=0.0027 Score=39.64 Aligned_cols=22 Identities=36% Similarity=0.588 Sum_probs=19.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7997378855778999999861
Q gi|254780552|r 57 VLFVGPPGLGKTTLAQVVAREL 78 (334)
Q Consensus 57 ~Lf~GPpG~GKTtlA~iiA~~l 78 (334)
+-+.||.||||||+.|+||.-.
T Consensus 34 ~~llGpSG~GKTTlLr~iaGL~ 55 (362)
T TIGR03258 34 LALIGKSGCGKTTLLRAIAGFV 55 (362)
T ss_pred EEEECCCCCHHHHHHHHHHCCC
T ss_conf 9999999745999999997776
No 379
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transport system, ATP-binding protein component. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=96.33 E-value=0.0027 Score=39.67 Aligned_cols=21 Identities=48% Similarity=0.782 Sum_probs=18.7
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q ss_conf 799737885577899999986
Q gi|254780552|r 57 VLFVGPPGLGKTTLAQVVARE 77 (334)
Q Consensus 57 ~Lf~GPpG~GKTtlA~iiA~~ 77 (334)
+-+.||.||||||+-|+||.-
T Consensus 33 ~~llGpSG~GKtTlLr~iaGl 53 (353)
T TIGR03265 33 VCLLGPSGCGKTTLLRIIAGL 53 (353)
T ss_pred EEEECCCCCHHHHHHHHHHCC
T ss_conf 999999953599999999769
No 380
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.33 E-value=0.0032 Score=39.21 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=20.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 79973788557789999998618
Q gi|254780552|r 57 VLFVGPPGLGKTTLAQVVARELG 79 (334)
Q Consensus 57 ~Lf~GPpG~GKTtlA~iiA~~l~ 79 (334)
+-|+|.||.||||+|+.+.+.+.
T Consensus 2 iW~tGLsgsGKTTlA~~l~~~L~ 24 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 89879999999999999999999
No 381
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.33 E-value=0.0026 Score=39.72 Aligned_cols=22 Identities=32% Similarity=0.596 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7997378855778999999861
Q gi|254780552|r 57 VLFVGPPGLGKTTLAQVVAREL 78 (334)
Q Consensus 57 ~Lf~GPpG~GKTtlA~iiA~~l 78 (334)
+-+.||.||||||+.|+|+.-.
T Consensus 53 ~~ivG~SGsGKSTLLr~i~GL~ 74 (269)
T cd03294 53 FVIMGLSGSGKSTLLRCINRLI 74 (269)
T ss_pred EEEECCCCCHHHHHHHHHHCCC
T ss_conf 9999899848999999997599
No 382
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.32 E-value=0.0036 Score=38.88 Aligned_cols=27 Identities=37% Similarity=0.737 Sum_probs=22.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 799737885577899999986189853
Q gi|254780552|r 57 VLFVGPPGLGKTTLAQVVARELGVNFR 83 (334)
Q Consensus 57 ~Lf~GPpG~GKTtlA~iiA~~l~~~~~ 83 (334)
+++.||+|+||||+++.+.+.+...+.
T Consensus 2 ivi~GPSG~GK~tl~~~L~~~~~~~~~ 28 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPNFG 28 (137)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCEE
T ss_conf 999999988999999999851987768
No 383
>pfam01057 Parvo_NS1 Parvovirus non-structural protein NS1. This family also contains the NS2 protein. Parvoviruses encode two non-structural proteins, NS1 and NS2. The mRNA for NS2 contains the coding sequence for the first 87 amino acids of NS1, then by an alternative splicing mechanism mRNA from a different reading frame, encoding the last 78 amino acids, makes up the full length of the NS2 mRNA. NS1, is the major non-structural protein. It is essential for DNA replication. It is an 83-kDa nuclear phosphoprotein. It has DNA helicase and ATPase activity.
Probab=96.29 E-value=0.0084 Score=36.64 Aligned_cols=26 Identities=42% Similarity=0.695 Sum_probs=22.6
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 70799737885577899999986189
Q gi|254780552|r 55 DHVLFVGPPGLGKTTLAQVVARELGV 80 (334)
Q Consensus 55 ~h~Lf~GPpG~GKTtlA~iiA~~l~~ 80 (334)
.-+.|||||.||||-+|..|++.++.
T Consensus 114 N~i~~~Gp~~TGks~la~ai~~~~~~ 139 (271)
T pfam01057 114 NTVWFYGPASTGKTNLAQAIAHAVPL 139 (271)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 56999889876789999999986895
No 384
>TIGR02533 type_II_gspE general secretory pathway protein E; InterPro: IPR013369 GspE, the E protein of the type II secretion system, is also referred to as the main terminal branch of the general secretion pathway. ; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0015628 protein secretion by the type II secretion system, 0015627 type II protein secretion system complex.
Probab=96.29 E-value=0.0084 Score=36.64 Aligned_cols=94 Identities=31% Similarity=0.479 Sum_probs=52.4
Q ss_pred CHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCC---CCCCCC---CCCHHH----
Q ss_conf 8778239799999999999986614677670799737885577899999986189853---125764---433467----
Q gi|254780552|r 26 TLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFR---STSGPV---IAKAGD---- 95 (334)
Q Consensus 26 ~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~~~---~~s~~~---~~~~~d---- 95 (334)
+|+++-=-++....+...|. +.+| + +|-+||-|.||||.-..--+.||.+=. .+--|+ +++.+.
T Consensus 223 ~L~~LGm~~~~l~~~~~li~--rpHG--I--iLVTGPTGSGKtTTLYaaL~~LN~~~~NIlTvEDPVEY~i~GIgQ~Qvn 296 (495)
T TIGR02533 223 DLEALGMSPELLSSLERLIK--RPHG--I--ILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEYQIEGIGQIQVN 296 (495)
T ss_pred HHHHCCCCHHHHHHHHHHHH--CCCC--E--EEECCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCEEEEECCCCEEEEC
T ss_conf 58864888889999999971--8896--1--8841778985258899999863589971568657824762487636514
Q ss_pred ----------HHHHHHHHHCCCHHHHHHHHHCCH---HHHHHHHH
Q ss_conf ----------666666410163788875761698---99999999
Q gi|254780552|r 96 ----------LAALLTNLEDRDVLFIDEIHRLSI---IVEEILYP 127 (334)
Q Consensus 96 ----------l~~~~~~~~~~~vlfiDEihrl~~---~~q~~Ll~ 127 (334)
|++++- +.++|+-|=||-=+=. ..|.+|--
T Consensus 297 ~kIglTFA~GLRaILR--QDPDiiMvGEIRD~ETA~IAiQASLTG 339 (495)
T TIGR02533 297 PKIGLTFAAGLRAILR--QDPDIIMVGEIRDLETAQIAIQASLTG 339 (495)
T ss_pred CCCCHHHHHHHHHHHC--CCCCEEEEECCCCHHHHHHHHHHHHHH
T ss_conf 6543038888788642--799889982316068999999876432
No 385
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=96.26 E-value=0.0052 Score=37.90 Aligned_cols=25 Identities=36% Similarity=0.578 Sum_probs=21.0
Q ss_pred CEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 0799737885577899999986189
Q gi|254780552|r 56 HVLFVGPPGLGKTTLAQVVARELGV 80 (334)
Q Consensus 56 h~Lf~GPpG~GKTtlA~iiA~~l~~ 80 (334)
++-+.||.|+||||++++++.-.+.
T Consensus 369 ~vaiVG~SGsGKSTL~~LL~r~ydp 393 (575)
T PRK11160 369 KVALLGRTGCGKSTLLQLLTRAWDP 393 (575)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 8999889997599999998623678
No 386
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=96.25 E-value=0.0033 Score=39.10 Aligned_cols=22 Identities=41% Similarity=0.652 Sum_probs=19.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7997378855778999999861
Q gi|254780552|r 57 VLFVGPPGLGKTTLAQVVAREL 78 (334)
Q Consensus 57 ~Lf~GPpG~GKTtlA~iiA~~l 78 (334)
+-+.||.||||||+.++||.-.
T Consensus 29 ~~i~GpSG~GKSTlLr~iaGl~ 50 (213)
T cd03301 29 VVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred EEEECCCCCHHHHHHHHHHCCC
T ss_conf 9999999880999999997699
No 387
>pfam00448 SRP54 SRP54-type protein, GTPase domain. This family includes relatives of the G-domain of the SRP54 family of proteins.
Probab=96.22 E-value=0.0041 Score=38.52 Aligned_cols=20 Identities=45% Similarity=0.592 Sum_probs=15.1
Q ss_pred EEEECCCCCCHHHHHHHHHH
Q ss_conf 79973788557789999998
Q gi|254780552|r 57 VLFVGPPGLGKTTLAQVVAR 76 (334)
Q Consensus 57 ~Lf~GPpG~GKTtlA~iiA~ 76 (334)
++|.||+|+||||.+-=+|.
T Consensus 4 i~lvGptGvGKTTTiaKLAa 23 (196)
T pfam00448 4 ILLVGLQGSGKTTTIAKLAA 23 (196)
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99989999988999999999
No 388
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.22 E-value=0.0041 Score=38.56 Aligned_cols=22 Identities=36% Similarity=0.727 Sum_probs=19.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7997378855778999999861
Q gi|254780552|r 57 VLFVGPPGLGKTTLAQVVAREL 78 (334)
Q Consensus 57 ~Lf~GPpG~GKTtlA~iiA~~l 78 (334)
++++||+|+||||+++.+.+..
T Consensus 4 ivl~GpsG~GK~tl~~~l~~~~ 25 (180)
T TIGR03263 4 IVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHC
T ss_conf 9998999889999999999768
No 389
>TIGR02868 CydC ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC; InterPro: IPR014223 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents CydC, a member of a heterodimeric ATP-binding cassette-type transporter (ABC transporter). It is involved in the export of glutathione from the cytoplasm to the periplasm and is required for the assembly of both cytochrome c and cytochrome bd , , .; GO: 0042626 ATPase activity coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane.
Probab=96.22 E-value=0.0039 Score=38.68 Aligned_cols=40 Identities=25% Similarity=0.384 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 99999999999986614677670799737885577899999986189
Q gi|254780552|r 34 VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV 80 (334)
Q Consensus 34 ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~~ 80 (334)
..+.+.+..-++.++ ++-..||.|||||||+..++.-++-
T Consensus 374 ~~vl~~V~L~l~~G~-------r~Ai~G~SG~GKsTLL~~L~G~l~P 413 (566)
T TIGR02868 374 PNVLDGVSLDLPPGE-------RVAILGPSGSGKSTLLATLAGLLDP 413 (566)
T ss_pred HHHHCCCCCCCCCCC-------CEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 465427864113886-------0898668876578999999840289
No 390
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.20 E-value=0.006 Score=37.53 Aligned_cols=25 Identities=28% Similarity=0.340 Sum_probs=19.3
Q ss_pred CCCCE-EEECCCCCCHHHHHHHHHHH
Q ss_conf 76707-99737885577899999986
Q gi|254780552|r 53 ALDHV-LFVGPPGLGKTTLAQVVARE 77 (334)
Q Consensus 53 ~~~h~-Lf~GPpG~GKTtlA~iiA~~ 77 (334)
+...+ .++||||+|||++|.-+|-.
T Consensus 17 ~~G~itEi~G~~GsGKTql~lqla~~ 42 (235)
T cd01123 17 ETGSITEIFGEFGSGKTQLCHQLAVT 42 (235)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 47879999999998499999999999
No 391
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=96.20 E-value=0.043 Score=32.32 Aligned_cols=150 Identities=24% Similarity=0.382 Sum_probs=76.9
Q ss_pred HHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHH-HH-CCC------------------------
Q ss_conf 7782397999999999999866146776707997378855778999999-86-189------------------------
Q gi|254780552|r 27 LEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA-RE-LGV------------------------ 80 (334)
Q Consensus 27 l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA-~~-l~~------------------------ 80 (334)
|+|---|..++..++.-.++ +++++ =|++|--|-|||-.|---| ++ ++-
T Consensus 593 yeET~DQl~AI~eVk~DM~~----~kpMD-RLiCGDVGFGKTEVAmRAAFkAV~~GKQVAvLVPTTlLA~QHy~tFkeRF 667 (1139)
T COG1197 593 YEETPDQLKAIEEVKRDMES----GKPMD-RLICGDVGFGKTEVAMRAAFKAVMDGKQVAVLVPTTLLAQQHYETFKERF 667 (1139)
T ss_pred CCCCHHHHHHHHHHHHHHCC----CCCCH-HEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHH
T ss_conf 85787899999999988606----98661-02565768759999999999986379749999260786899899999873
Q ss_pred ---CC--CCCCCCCCCCHHHHHHHHHHHHCC---------------------CHHHHHHHHHCCHHHHHHHHHHHHCCCC
Q ss_conf ---85--312576443346766666641016---------------------3788875761698999999998634751
Q gi|254780552|r 81 ---NF--RSTSGPVIAKAGDLAALLTNLEDR---------------------DVLFIDEIHRLSIIVEEILYPAMEDFQL 134 (334)
Q Consensus 81 ---~~--~~~s~~~~~~~~dl~~~~~~~~~~---------------------~vlfiDEihrl~~~~q~~Ll~~mE~~~i 134 (334)
+. ..+| -+...++...++..++.| ..++|||=|||.-.+-|.|=.. - -.|
T Consensus 668 ~~fPV~I~~LS--RF~s~kE~~~il~~la~G~vDIvIGTHrLL~kdv~FkdLGLlIIDEEqRFGVk~KEkLK~L-r-~~V 743 (1139)
T COG1197 668 AGFPVRIEVLS--RFRSAKEQKEILKGLAEGKVDIVIGTHRLLSKDVKFKDLGLLIIDEEQRFGVKHKEKLKEL-R-ANV 743 (1139)
T ss_pred CCCCEEEEEEC--CCCCHHHHHHHHHHHHCCCCCEEEECHHHHCCCCEEECCCEEEEECHHHCCCCHHHHHHHH-H-CCC
T ss_conf 38982588860--5578899999999985698458996317647896770476489744353271178999877-5-057
Q ss_pred CCC-CCCCCCCCEEECCCC---CCEEEECCCCCCCCCHHHHHCCCCEEECCCCCHHHHHHHHHH
Q ss_conf 002-567876520004667---400552045543355454420120673264547999998777
Q gi|254780552|r 135 DLM-VGEGPSARSVKINLS---RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 (334)
Q Consensus 135 ~i~-~~~~~~a~~~~~~~~---~f~lI~ATt~~~~l~~~l~sR~~~~~~~~~~~~~el~~il~~ 194 (334)
++. .+..|--+|..|-+. .+.+ |.-|=.+|+.+.....+|++.-+.+.+.|
T Consensus 744 DvLTLSATPIPRTL~Msm~GiRdlSv---------I~TPP~~R~pV~T~V~~~d~~~ireAI~R 798 (1139)
T COG1197 744 DVLTLSATPIPRTLNMSLSGIRDLSV---------IATPPEDRLPVKTFVSEYDDLLIREAILR 798 (1139)
T ss_pred CEEEEECCCCCCHHHHHHHCCHHHHH---------CCCCCCCCCCEEEEEECCCHHHHHHHHHH
T ss_conf 28974178875447777744303311---------14799877212888715882899999999
No 392
>PRK10646 putative ATPase; Provisional
Probab=96.19 E-value=0.016 Score=34.94 Aligned_cols=34 Identities=26% Similarity=0.377 Sum_probs=26.4
Q ss_pred CEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 07997378855778999999861898531257644
Q gi|254780552|r 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 (334)
Q Consensus 56 h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~~~~ 90 (334)
-++|+|+=|.||||++|-+++.++.+-... .|.+
T Consensus 30 vi~L~G~LGaGKTtf~r~i~~~lg~~~~V~-SPTf 63 (153)
T PRK10646 30 VIYLYGDLGAGKTTFSRGFLQALGHQGNVK-SPTY 63 (153)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCC-CCCE
T ss_conf 999988887899999999999849978626-9976
No 393
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=96.19 E-value=0.0036 Score=38.92 Aligned_cols=21 Identities=29% Similarity=0.495 Sum_probs=18.7
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q ss_conf 799737885577899999986
Q gi|254780552|r 57 VLFVGPPGLGKTTLAQVVARE 77 (334)
Q Consensus 57 ~Lf~GPpG~GKTtlA~iiA~~ 77 (334)
+-+.||+||||||+.|+|+.-
T Consensus 53 ~~lvGpSGsGKSTLLr~i~GL 73 (382)
T TIGR03415 53 CVLMGLSGSGKSSLLRAVNGL 73 (382)
T ss_pred EEEECCCCCHHHHHHHHHHCC
T ss_conf 999999973499999999759
No 394
>PRK10689 transcription-repair coupling factor; Provisional
Probab=96.18 E-value=0.034 Score=32.94 Aligned_cols=114 Identities=22% Similarity=0.306 Sum_probs=58.9
Q ss_pred HHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHH-HH-C-CCC----------------------
Q ss_conf 7782397999999999999866146776707997378855778999999-86-1-898----------------------
Q gi|254780552|r 27 LEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA-RE-L-GVN---------------------- 81 (334)
Q Consensus 27 l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA-~~-l-~~~---------------------- 81 (334)
++|=-.|..+++.++.=.++ .++++ =|+||=-|-|||-+|---| +. + |..
T Consensus 599 yeET~DQl~AI~eV~~DMes----~~PMD-RLiCGDVGfGKTEVA~RAAFkav~~gkQVavlvPTTiLA~QH~~tF~~Rf 673 (1148)
T PRK10689 599 FETTPDQAQAINAVLSDMCQ----PLAMD-RLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDRF 673 (1148)
T ss_pred CCCCHHHHHHHHHHHHHHHC----CCCCC-EEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 97876899999999877638----86774-15676888877999999999999639808998366223799999999876
Q ss_pred ------CCCCCCCCCCCHHHHHHHHHHHHCC---------------------CHHHHHHHHHCCHHHHHHHHHHHHCCCC
Q ss_conf ------5312576443346766666641016---------------------3788875761698999999998634751
Q gi|254780552|r 82 ------FRSTSGPVIAKAGDLAALLTNLEDR---------------------DVLFIDEIHRLSIIVEEILYPAMEDFQL 134 (334)
Q Consensus 82 ------~~~~s~~~~~~~~dl~~~~~~~~~~---------------------~vlfiDEihrl~~~~q~~Ll~~mE~~~i 134 (334)
...+|. +..+++...++..++.| ..|+|||=|||.-.+-|.|-.. - -.+
T Consensus 674 ~~~pv~i~~LsR--f~s~ke~~~i~~~l~~G~idIvIGTH~ll~~dv~f~~LGLlIiDEEqrFGV~~KE~lk~l-~-~~v 749 (1148)
T PRK10689 674 ANWPVRIEMLSR--FRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLLIVDEEHRFGVRHKERIKAM-R-ADV 749 (1148)
T ss_pred HCCCCEEEEECC--CCCHHHHHHHHHHHHCCCCCEEEHHHHHHCCCCCCCCCCEEEECCCHHCCHHHHHHHHHC-C-CCC
T ss_conf 415733775038--888999999999986699877620488866986546664378601021379999999722-8-998
Q ss_pred CCC-CCCCCCCCEEEC
Q ss_conf 002-567876520004
Q gi|254780552|r 135 DLM-VGEGPSARSVKI 149 (334)
Q Consensus 135 ~i~-~~~~~~a~~~~~ 149 (334)
++. .+.+|=-+|..|
T Consensus 750 dvLtltATPIPRTL~m 765 (1148)
T PRK10689 750 DILTLTATPIPRTLNM 765 (1148)
T ss_pred CEEEEECCCCHHHHHH
T ss_conf 7897625564469999
No 395
>KOG0060 consensus
Probab=96.18 E-value=0.0037 Score=38.79 Aligned_cols=21 Identities=43% Similarity=0.801 Sum_probs=15.7
Q ss_pred CEEEECCCCCCHHHHHHHHHH
Q ss_conf 079973788557789999998
Q gi|254780552|r 56 HVLFVGPPGLGKTTLAQVVAR 76 (334)
Q Consensus 56 h~Lf~GPpG~GKTtlA~iiA~ 76 (334)
|+|.+||.||||||+-|.+|.
T Consensus 463 ~LLItG~sG~GKtSLlRvlgg 483 (659)
T KOG0060 463 NLLITGPSGCGKTSLLRVLGG 483 (659)
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 599978998763689999853
No 396
>pfam00625 Guanylate_kin Guanylate kinase.
Probab=96.17 E-value=0.0052 Score=37.90 Aligned_cols=27 Identities=26% Similarity=0.631 Sum_probs=22.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 799737885577899999986189853
Q gi|254780552|r 57 VLFVGPPGLGKTTLAQVVARELGVNFR 83 (334)
Q Consensus 57 ~Lf~GPpG~GKTtlA~iiA~~l~~~~~ 83 (334)
++|+||+|+||||+++.+.......|.
T Consensus 4 ivl~GPSG~GK~tl~~~L~~~~~~~~~ 30 (182)
T pfam00625 4 IVLSGPSGVGKSHIKKALLDEYPEKFG 30 (182)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCEE
T ss_conf 999898999999999999984866734
No 397
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=96.16 E-value=0.0035 Score=39.00 Aligned_cols=29 Identities=38% Similarity=0.721 Sum_probs=24.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCC
Q ss_conf 79973788557789999998618985312
Q gi|254780552|r 57 VLFVGPPGLGKTTLAQVVARELGVNFRST 85 (334)
Q Consensus 57 ~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~ 85 (334)
+=.-||.|+||+|+|+.+|+.+|+.+.-+
T Consensus 287 IAIDGPAgSGKSTvAK~lA~~L~~~yLDT 315 (512)
T PRK13477 287 IAIDGPAGAGKSTVTRAVAKKLGLLYLDT 315 (512)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEECC
T ss_conf 99867875787899999999819968624
No 398
>TIGR00631 uvrb excinuclease ABC, B subunit; InterPro: IPR004807 All proteins in this family for which functions are known are DNA helicases that function in the nucleotide excision repair and are endonucleases that make the 3' incision next to DNA damage. They are part of a pathway requiring UvrA, UvrB, UvrC, and UvrD homologs.; GO: 0009381 excinuclease ABC activity, 0006289 nucleotide-excision repair, 0005737 cytoplasm, 0009380 excinuclease repair complex.
Probab=96.16 E-value=0.0078 Score=36.85 Aligned_cols=43 Identities=33% Similarity=0.369 Sum_probs=32.5
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHH-HHHHHHHHHCCCC
Q ss_conf 9799999999999986614677670799737885577-8999999861898
Q gi|254780552|r 32 GQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKT-TLAQVVARELGVN 81 (334)
Q Consensus 32 GQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKT-tlA~iiA~~l~~~ 81 (334)
-|..+++.|...++++ ..|-.|-|-.||||| |+|++||+ +|.|
T Consensus 13 DQP~AI~~L~~~l~~G------~~~QtLLGvTGsGKTFT~AnVIa~-~~rP 56 (667)
T TIGR00631 13 DQPKAIAKLVEGLEAG------EKEQTLLGVTGSGKTFTMANVIAQ-VQRP 56 (667)
T ss_pred CHHHHHHHHHHHHHCC------CCCEEEEEEECCCHHHHHHHHHHH-HCCC
T ss_conf 8189999999998568------871478532148627889899998-4798
No 399
>pfam02367 UPF0079 Uncharacterized P-loop hydrolase UPF0079. This uncharacterized family contains a P-loop.
Probab=96.15 E-value=0.0064 Score=37.38 Aligned_cols=33 Identities=36% Similarity=0.590 Sum_probs=26.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 7997378855778999999861898531257644
Q gi|254780552|r 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVI 90 (334)
Q Consensus 57 ~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~~~~ 90 (334)
++|.|+=|+||||++|.+++.++..-. ++.|.+
T Consensus 18 i~L~G~LGaGKTtfvr~i~~~lg~~~~-V~SPTF 50 (123)
T pfam02367 18 VLLSGDLGAGKTTFVRGLAKGLGITGN-VTSPTF 50 (123)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCC-CCCCCE
T ss_conf 999888778899999999998599887-379955
No 400
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=96.15 E-value=0.0036 Score=38.91 Aligned_cols=22 Identities=36% Similarity=0.635 Sum_probs=19.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7997378855778999999861
Q gi|254780552|r 57 VLFVGPPGLGKTTLAQVVAREL 78 (334)
Q Consensus 57 ~Lf~GPpG~GKTtlA~iiA~~l 78 (334)
.+|+|.||.||||+||-+...+
T Consensus 2 CVLcGLPaAGKTTLar~L~~~l 23 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATL 23 (340)
T ss_pred EEECCCCCCCHHHHHHHHHHHH
T ss_conf 0432698787368999999998
No 401
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.14 E-value=0.0039 Score=38.69 Aligned_cols=22 Identities=45% Similarity=0.681 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7997378855778999999861
Q gi|254780552|r 57 VLFVGPPGLGKTTLAQVVAREL 78 (334)
Q Consensus 57 ~Lf~GPpG~GKTtlA~iiA~~l 78 (334)
+-+.||.|+||||+.++|+.-.
T Consensus 31 ~~iiGpSGsGKSTll~~i~Gl~ 52 (239)
T cd03296 31 VALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred EEEECCCCCHHHHHHHHHHCCC
T ss_conf 9999999977999999997699
No 402
>CHL00178 consensus
Probab=96.13 E-value=0.049 Score=31.95 Aligned_cols=31 Identities=26% Similarity=0.395 Sum_probs=25.8
Q ss_pred CEEEECCCCCCHHHHHHHHHHHCCCCCCCCC
Q ss_conf 0799737885577899999986189853125
Q gi|254780552|r 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTS 86 (334)
Q Consensus 56 h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s 86 (334)
.+|+.||.|||..-|++-+|...-++++.++
T Consensus 1460 GILlIGsigTGRSYLVKsLAanSYvPlI~I~ 1490 (2133)
T CHL00178 1460 GILVIGSIGTGRSYLVKYLATNSYVPFITVF 1490 (2133)
T ss_pred CEEEECCCCCCHHHHHHHHHHCCCCCCEEEC
T ss_conf 6379787766668999887642537518950
No 403
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.12 E-value=0.0041 Score=38.57 Aligned_cols=23 Identities=35% Similarity=0.730 Sum_probs=19.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 79973788557789999998618
Q gi|254780552|r 57 VLFVGPPGLGKTTLAQVVARELG 79 (334)
Q Consensus 57 ~Lf~GPpG~GKTtlA~iiA~~l~ 79 (334)
+-+.||.||||||+.++|+.-+.
T Consensus 30 ~~ilGpSG~GKSTllr~i~gl~~ 52 (242)
T cd03295 30 LVLIGPSGSGKTTTMKMINRLIE 52 (242)
T ss_pred EEEECCCCCHHHHHHHHHHCCCC
T ss_conf 99999999569999999975999
No 404
>TIGR02528 EutP ethanolamine utilization protein, EutP; InterPro: IPR012381 Members of this family function in ethanolamine and propanediol degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose , . More than 10f the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect , . The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella , , . Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 biogenic amine metabolic process.
Probab=96.12 E-value=0.0022 Score=40.20 Aligned_cols=39 Identities=33% Similarity=0.683 Sum_probs=27.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCC------CCCCCHHHH
Q ss_conf 7997378855778999999861898531257------644334676
Q gi|254780552|r 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG------PVIAKAGDL 96 (334)
Q Consensus 57 ~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~------~~~~~~~dl 96 (334)
++|.|+.|||||||...+-++ ...++.++| ..|..||+-
T Consensus 3 ~~f~G~~gCGKTTL~q~L~g~-~~~YKKTQAvE~~~k~~IDTPGEY 47 (144)
T TIGR02528 3 IMFIGSVGCGKTTLTQALQGE-EIKYKKTQAVEYKDKEAIDTPGEY 47 (144)
T ss_pred EEEEECCCCCHHHHHHHCCCC-CCCEEEEEEEEECCCCCCCCCCCC
T ss_conf 788715888744354311687-321023344542588865598500
No 405
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.11 E-value=0.0053 Score=37.85 Aligned_cols=24 Identities=38% Similarity=0.574 Sum_probs=21.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 799737885577899999986189
Q gi|254780552|r 57 VLFVGPPGLGKTTLAQVVARELGV 80 (334)
Q Consensus 57 ~Lf~GPpG~GKTtlA~iiA~~l~~ 80 (334)
+-..|++|.||||+|+.|++.++.
T Consensus 2 IgI~G~sgsGKTT~a~~L~~~l~~ 25 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQLGN 25 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 898899988599999999998099
No 406
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.11 E-value=0.0035 Score=39.00 Aligned_cols=22 Identities=36% Similarity=0.498 Sum_probs=18.4
Q ss_pred CEEEECCCCCCHHHHHHHHHHH
Q ss_conf 0799737885577899999986
Q gi|254780552|r 56 HVLFVGPPGLGKTTLAQVVARE 77 (334)
Q Consensus 56 h~Lf~GPpG~GKTtlA~iiA~~ 77 (334)
..|+.|||||||||+|--.+.+
T Consensus 268 stLi~Gp~GtGKTtla~qFl~~ 289 (501)
T PRK09302 268 IILVSGATGTGKTLLVSKFAEA 289 (501)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 6999889998889999999999
No 407
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.10 E-value=0.005 Score=38.04 Aligned_cols=23 Identities=43% Similarity=0.705 Sum_probs=20.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 79973788557789999998618
Q gi|254780552|r 57 VLFVGPPGLGKTTLAQVVARELG 79 (334)
Q Consensus 57 ~Lf~GPpG~GKTtlA~iiA~~l~ 79 (334)
+-|+|.||.||||+|+.+.+.+.
T Consensus 7 iWltGlsgSGKTTia~~l~~~L~ 29 (175)
T PRK00889 7 VWFTGLSGAGKTTISHALAEKLR 29 (175)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99889899999999999999999
No 408
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.10 E-value=0.0036 Score=38.89 Aligned_cols=21 Identities=43% Similarity=0.583 Sum_probs=18.3
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q ss_conf 799737885577899999986
Q gi|254780552|r 57 VLFVGPPGLGKTTLAQVVARE 77 (334)
Q Consensus 57 ~Lf~GPpG~GKTtlA~iiA~~ 77 (334)
+=+.||.||||||++|++|.-
T Consensus 36 lgivGeSGsGKSTL~r~l~Gl 56 (252)
T COG1124 36 LGIVGESGSGKSTLARLLAGL 56 (252)
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999848989888999999565
No 409
>PRK10436 hypothetical protein; Provisional
Probab=96.10 E-value=0.022 Score=34.12 Aligned_cols=105 Identities=26% Similarity=0.316 Sum_probs=57.1
Q ss_pred CCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCC---CCCCCC-----------
Q ss_conf 898778239799999999999986614677670799737885577899999986189853---125764-----------
Q gi|254780552|r 24 PRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFR---STSGPV----------- 89 (334)
Q Consensus 24 P~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~~~---~~s~~~----------- 89 (334)
+.+|+++--.+.....++.++.. .. +=+|++||.|.||||.-..+-++++.+-. .+--|+
T Consensus 191 ~~~L~~LG~~~~~~~~~~~~~~~--p~----GliLvtGPTGSGKTTTLya~L~~l~~~~~~I~TiEDPVE~~l~gi~Q~~ 264 (461)
T PRK10436 191 TLDLETLGMTPAQLAQFRQALQQ--PQ----GLVLVTGPTGSGKTVTLYSALQTLNTAQINICSVEDPVEIPLAGINQTQ 264 (461)
T ss_pred CCCHHHHCCCHHHHHHHHHHHHC--CC----CEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCE
T ss_conf 68887848899999999999838--99----7799978999956999999997434677169996077435546754523
Q ss_pred -CCCHH-HHHHHHHHH--HCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCC
Q ss_conf -43346-766666641--016378887576169899999999863475100
Q gi|254780552|r 90 -IAKAG-DLAALLTNL--EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDL 136 (334)
Q Consensus 90 -~~~~~-dl~~~~~~~--~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i 136 (334)
-.+.+ +....+.++ ...+|+.|.||. =...++-++--++ .|.+++
T Consensus 265 vn~~~g~tfa~~lrs~LRqDPDVImvGEIR-D~eTA~~Ai~AAl-TGHLVl 313 (461)
T PRK10436 265 IHPRAGLTFQRVLRALLRQDPDVIMVGEIR-DGETAEIAIKAAQ-TGHLVL 313 (461)
T ss_pred ECCCCCHHHHHHHHHHHCCCCCEEEECCCC-CHHHHHHHHHHHH-HCCEEE
T ss_conf 132213139999999874699999865778-8999999999997-198488
No 410
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.09 E-value=0.0046 Score=38.27 Aligned_cols=22 Identities=41% Similarity=0.659 Sum_probs=19.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7997378855778999999861
Q gi|254780552|r 57 VLFVGPPGLGKTTLAQVVAREL 78 (334)
Q Consensus 57 ~Lf~GPpG~GKTtlA~iiA~~l 78 (334)
+-+.||+||||||+-|+||.-.
T Consensus 32 vsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 32 VAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9998999788999999996878
No 411
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.08 E-value=0.0045 Score=38.30 Aligned_cols=21 Identities=43% Similarity=0.695 Sum_probs=18.6
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q ss_conf 799737885577899999986
Q gi|254780552|r 57 VLFVGPPGLGKTTLAQVVARE 77 (334)
Q Consensus 57 ~Lf~GPpG~GKTtlA~iiA~~ 77 (334)
+-+.||.||||||+.|+|+.-
T Consensus 29 ~~iiGpSGsGKSTllr~i~Gl 49 (232)
T cd03300 29 FTLLGPSGCGKTTLLRLIAGF 49 (232)
T ss_pred EEEECCCCCHHHHHHHHHHCC
T ss_conf 999999998399999999779
No 412
>PRK06696 uridine kinase; Validated
Probab=96.08 E-value=0.018 Score=34.65 Aligned_cols=29 Identities=31% Similarity=0.285 Sum_probs=22.6
Q ss_pred EEECCCCCCHHHHHHHHHHHCC---CCCCCCC
Q ss_conf 9973788557789999998618---9853125
Q gi|254780552|r 58 LFVGPPGLGKTTLAQVVARELG---VNFRSTS 86 (334)
Q Consensus 58 Lf~GPpG~GKTtlA~iiA~~l~---~~~~~~s 86 (334)
=.-||||+||||+|..|+..++ .++..++
T Consensus 30 gIdG~~gSGKTTlA~~La~~L~~~G~~V~~v~ 61 (227)
T PRK06696 30 AIDGITASGKTTFANELAEEIKKRGRPVIRAS 61 (227)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 97789987879999999999974699489971
No 413
>pfam06745 KaiC KaiC. This family represents a conserved region within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein. This family includes KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria.
Probab=96.07 E-value=0.0053 Score=37.88 Aligned_cols=43 Identities=28% Similarity=0.235 Sum_probs=26.1
Q ss_pred CEEEECCCCCCHHHHHHHHH-H---HCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 07997378855778999999-8---618985312576443346766666
Q gi|254780552|r 56 HVLFVGPPGLGKTTLAQVVA-R---ELGVNFRSTSGPVIAKAGDLAALL 100 (334)
Q Consensus 56 h~Lf~GPpG~GKTtlA~iiA-~---~l~~~~~~~s~~~~~~~~dl~~~~ 100 (334)
.+|++||||+|||++|.-++ + ..|.++..++. -+.+.++...+
T Consensus 21 ~~LI~G~pGsGKT~la~qfl~~ga~~~ge~~lYis~--ee~~~~l~~~~ 67 (231)
T pfam06745 21 VVLITGGPGTGKTIFGLQFLYNGALEYGEPGVYVTL--EEPPEDLRENA 67 (231)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEE--CCCHHHHHHHH
T ss_conf 999985897259999999999999865896899981--37999999999
No 414
>KOG0922 consensus
Probab=96.07 E-value=0.0024 Score=39.93 Aligned_cols=71 Identities=34% Similarity=0.536 Sum_probs=40.6
Q ss_pred CEEEECCCCCCHHH-----------------------------HHHHHHHHCCCCCCCCCCCCC---------CCHH---
Q ss_conf 07997378855778-----------------------------999999861898531257644---------3346---
Q gi|254780552|r 56 HVLFVGPPGLGKTT-----------------------------LAQVVARELGVNFRSTSGPVI---------AKAG--- 94 (334)
Q Consensus 56 h~Lf~GPpG~GKTt-----------------------------lA~iiA~~l~~~~~~~s~~~~---------~~~~--- 94 (334)
-++..|+.|+|||| +|+-+|.|+++.+.+.-|-.+ ++.+
T Consensus 68 vlIviGeTGsGKSTQipQyL~eaG~~~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~VGY~IRFed~ts~~TrikymT 147 (674)
T KOG0922 68 VLIVIGETGSGKSTQIPQYLAEAGFASSGKIACTQPRRVAAVSLAKRVAEEMGCQLGEEVGYTIRFEDSTSKDTRIKYMT 147 (674)
T ss_pred EEEEECCCCCCCCCCHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCEEEEEEC
T ss_conf 79998489898533276999862656688277506716778889999999858976762226998456678733699961
Q ss_pred H---HHHHHH--HHHCCCHHHHHHHHHCCHHHHHHHHH
Q ss_conf 7---666666--41016378887576169899999999
Q gi|254780552|r 95 D---LAALLT--NLEDRDVLFIDEIHRLSIIVEEILYP 127 (334)
Q Consensus 95 d---l~~~~~--~~~~~~vlfiDEihrl~~~~q~~Ll~ 127 (334)
| ++.++. .+.+-+|++|||+|+=+-. -|.||-
T Consensus 148 DG~LLRE~l~Dp~LskYsvIIlDEAHERsl~-TDiLlG 184 (674)
T KOG0922 148 DGMLLREILKDPLLSKYSVIILDEAHERSLH-TDILLG 184 (674)
T ss_pred CHHHHHHHHCCCCCCCCCEEEEECHHHHHHH-HHHHHH
T ss_conf 3599998850876454448998322310157-889999
No 415
>pfam01745 IPT Isopentenyl transferase. Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid.
Probab=96.06 E-value=0.0058 Score=37.62 Aligned_cols=29 Identities=31% Similarity=0.271 Sum_probs=25.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCC
Q ss_conf 79973788557789999998618985312
Q gi|254780552|r 57 VLFVGPPGLGKTTLAQVVARELGVNFRST 85 (334)
Q Consensus 57 ~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~ 85 (334)
.+.+||.|+|||.+|-.+|+.+|++.+..
T Consensus 4 ~~I~GpT~~GKT~~ai~lA~~~g~~iis~ 32 (232)
T pfam01745 4 YLIWGATCTGKTAEAIALAKETGWPVIVL 32 (232)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEEE
T ss_conf 89978877771699999999959977962
No 416
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.04 E-value=0.0042 Score=38.49 Aligned_cols=29 Identities=38% Similarity=0.749 Sum_probs=25.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCC
Q ss_conf 79973788557789999998618985312
Q gi|254780552|r 57 VLFVGPPGLGKTTLAQVVARELGVNFRST 85 (334)
Q Consensus 57 ~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~ 85 (334)
+=.-||.|+||.|+|+++|+.||..+..+
T Consensus 7 IAIDGPagsGKsTvak~lA~~Lg~~yldT 35 (222)
T COG0283 7 IAIDGPAGSGKSTVAKILAEKLGFHYLDT 35 (222)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEECC
T ss_conf 99768875684789999999809866645
No 417
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.04 E-value=0.0046 Score=38.22 Aligned_cols=22 Identities=32% Similarity=0.647 Sum_probs=19.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7997378855778999999861
Q gi|254780552|r 57 VLFVGPPGLGKTTLAQVVAREL 78 (334)
Q Consensus 57 ~Lf~GPpG~GKTtlA~iiA~~l 78 (334)
+-+.||.|+||||+.++|+.-.
T Consensus 28 ~~iiGpSGsGKSTLlr~i~Gl~ 49 (235)
T cd03299 28 FVILGPTGSGKSVLLETIAGFI 49 (235)
T ss_pred EEEECCCCCHHHHHHHHHHCCC
T ss_conf 9999999635999999997499
No 418
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=96.04 E-value=0.0042 Score=38.46 Aligned_cols=35 Identities=29% Similarity=0.552 Sum_probs=26.9
Q ss_pred CCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHH
Q ss_conf 3788557789999998618985312576443346766
Q gi|254780552|r 61 GPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLA 97 (334)
Q Consensus 61 GPpG~GKTtlA~iiA~~l~~~~~~~s~~~~~~~~dl~ 97 (334)
|..||||||++..+|..++++|+. |-.+.-+.++.
T Consensus 2 GVsG~GKStvg~~lA~~lg~~fid--GDdlHp~aNi~ 36 (161)
T COG3265 2 GVSGSGKSTVGSALAERLGAKFID--GDDLHPPANIE 36 (161)
T ss_pred CCCCCCHHHHHHHHHHHCCCCEEC--CCCCCCHHHHH
T ss_conf 877657779999999980982333--56569988999
No 419
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.03 E-value=0.012 Score=35.74 Aligned_cols=27 Identities=30% Similarity=0.313 Sum_probs=20.7
Q ss_pred CCCCCCE-EEECCCCCCHHHHHHHHHHH
Q ss_conf 6776707-99737885577899999986
Q gi|254780552|r 51 AEALDHV-LFVGPPGLGKTTLAQVVARE 77 (334)
Q Consensus 51 ~~~~~h~-Lf~GPpG~GKTtlA~iiA~~ 77 (334)
|-+...+ .++||||+|||++|.-+|..
T Consensus 15 Gip~G~ItEi~G~~gsGKT~l~lqla~~ 42 (226)
T cd01393 15 GIPTGRITEIFGEFGSGKTQLCLQLAVE 42 (226)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9888839999999999899999999999
No 420
>PRK06762 hypothetical protein; Provisional
Probab=96.02 E-value=0.0075 Score=36.94 Aligned_cols=31 Identities=32% Similarity=0.448 Sum_probs=26.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 7997378855778999999861898531257
Q gi|254780552|r 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 (334)
Q Consensus 57 ~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~ 87 (334)
+++=|++|+||||+|+.+-..+|..+..++-
T Consensus 5 IiiRGNSgSGKtT~Ak~L~~~~G~g~lLvsQ 35 (166)
T PRK06762 5 IIIRGNSGSGKTTIAKQLQERLGRGTLLVSQ 35 (166)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCEEEEH
T ss_conf 9997888888789999999986888578537
No 421
>PRK09518 bifunctional cytidylate kinase/GTP-binding protein; Reviewed
Probab=96.02 E-value=0.0042 Score=38.50 Aligned_cols=28 Identities=29% Similarity=0.634 Sum_probs=22.8
Q ss_pred EEECCCCCCHHHHHHHHHHHCCCCCCCC
Q ss_conf 9973788557789999998618985312
Q gi|254780552|r 58 LFVGPPGLGKTTLAQVVARELGVNFRST 85 (334)
Q Consensus 58 Lf~GPpG~GKTtlA~iiA~~l~~~~~~~ 85 (334)
=.-||.|+||+|+|+.+|+.+|+.+.-+
T Consensus 8 AIDGPagsGKSTvak~lA~~Lg~~yLDT 35 (714)
T PRK09518 8 AIDGPAGVGKSSVSRALAQYFGYAYLDT 35 (714)
T ss_pred EEECCCCCCHHHHHHHHHHHHCCEEECC
T ss_conf 9778986589999999999949918870
No 422
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=96.01 E-value=0.0042 Score=38.49 Aligned_cols=22 Identities=27% Similarity=0.456 Sum_probs=18.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7997378855778999999861
Q gi|254780552|r 57 VLFVGPPGLGKTTLAQVVAREL 78 (334)
Q Consensus 57 ~Lf~GPpG~GKTtlA~iiA~~l 78 (334)
.-+.||.|+||||+.++||.-.
T Consensus 27 ~~l~GpsGaGKTTLl~~iaGl~ 48 (352)
T PRK11144 27 TAIFGRSGAGKTSLINLISGLT 48 (352)
T ss_pred EEEECCCCCHHHHHHHHHHCCC
T ss_conf 9999999962999999997689
No 423
>TIGR00017 cmk cytidylate kinase; InterPro: IPR003136 This family consists of cytidylate kinase (2.7.4.14 from EC), which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors .; GO: 0004127 cytidylate kinase activity, 0005524 ATP binding, 0006139 nucleobase nucleoside nucleotide and nucleic acid metabolic process.
Probab=96.00 E-value=0.0043 Score=38.45 Aligned_cols=29 Identities=38% Similarity=0.715 Sum_probs=24.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCC
Q ss_conf 79973788557789999998618985312
Q gi|254780552|r 57 VLFVGPPGLGKTTLAQVVARELGVNFRST 85 (334)
Q Consensus 57 ~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~ 85 (334)
+=.=||.|.||.|+|+.+|..+++.|..+
T Consensus 5 IAIDGPs~aGKStvak~~A~~L~y~ylds 33 (223)
T TIGR00017 5 IAIDGPSGAGKSTVAKAVAEKLGYKYLDS 33 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEECC
T ss_conf 76237764655789999998629502144
No 424
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=96.00 E-value=0.0062 Score=37.44 Aligned_cols=20 Identities=50% Similarity=0.951 Sum_probs=16.9
Q ss_pred EECCCCCCHHHHHHHHHHHC
Q ss_conf 97378855778999999861
Q gi|254780552|r 59 FVGPPGLGKTTLAQVVAREL 78 (334)
Q Consensus 59 f~GPpG~GKTtlA~iiA~~l 78 (334)
..||||||||||.|-+-+-+
T Consensus 74 vvGPpGtGKsTLirSlVrr~ 93 (1077)
T COG5192 74 VVGPPGTGKSTLIRSLVRRF 93 (1077)
T ss_pred EECCCCCCHHHHHHHHHHHH
T ss_conf 63699887468999999998
No 425
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.00 E-value=0.0041 Score=38.52 Aligned_cols=21 Identities=33% Similarity=0.465 Sum_probs=18.4
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q ss_conf 799737885577899999986
Q gi|254780552|r 57 VLFVGPPGLGKTTLAQVVARE 77 (334)
Q Consensus 57 ~Lf~GPpG~GKTtlA~iiA~~ 77 (334)
+-+.||.|+||||+.++||.-
T Consensus 26 ~~iiGpSGsGKSTll~~i~GL 46 (214)
T cd03297 26 TGIFGASGAGKSTLLRCIAGL 46 (214)
T ss_pred EEEECCCCCHHHHHHHHHHCC
T ss_conf 999999973599999999849
No 426
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit; InterPro: IPR005892 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits this transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L. lactis functionally complements an Escherichia coli proU mutant. The complementing locus is similar to a opuA locus in Bacillus subtlis. This clarifies the differences in nomenclature.; GO: 0005524 ATP binding, 0015171 amino acid transmembrane transporter activity, 0006865 amino acid transport, 0016020 membrane.
Probab=96.00 E-value=0.0049 Score=38.06 Aligned_cols=20 Identities=35% Similarity=0.682 Sum_probs=18.0
Q ss_pred EEEECCCCCCHHHHHHHHHH
Q ss_conf 79973788557789999998
Q gi|254780552|r 57 VLFVGPPGLGKTTLAQVVAR 76 (334)
Q Consensus 57 ~Lf~GPpG~GKTtlA~iiA~ 76 (334)
+.|-||+||||||+.|.|=+
T Consensus 22 ~vi~GlSGsGKsT~vrmlNR 41 (372)
T TIGR01186 22 FVIMGLSGSGKSTLVRMLNR 41 (372)
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99977899857899999872
No 427
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=95.97 E-value=0.0052 Score=37.89 Aligned_cols=22 Identities=36% Similarity=0.614 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7997378855778999999861
Q gi|254780552|r 57 VLFVGPPGLGKTTLAQVVAREL 78 (334)
Q Consensus 57 ~Lf~GPpG~GKTtlA~iiA~~l 78 (334)
+-+.||.||||||+.++||.-.
T Consensus 46 ~~llGpSGsGKSTLlr~iaGl~ 67 (378)
T PRK09452 46 LTLLGPSGCGKTTVLRLIAGFE 67 (378)
T ss_pred EEEECCCCCHHHHHHHHHHCCC
T ss_conf 9999899976999999997699
No 428
>PRK13768 GTPase; Provisional
Probab=95.97 E-value=0.0062 Score=37.46 Aligned_cols=30 Identities=37% Similarity=0.582 Sum_probs=22.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHC---CCCCCCCC
Q ss_conf 7997378855778999999861---89853125
Q gi|254780552|r 57 VLFVGPPGLGKTTLAQVVAREL---GVNFRSTS 86 (334)
Q Consensus 57 ~Lf~GPpG~GKTtlA~iiA~~l---~~~~~~~s 86 (334)
+++.||||+||||+...+..-+ +.+...+|
T Consensus 5 ~~ViGpaGSGKsT~~~~l~~~l~~~~r~~~vvN 37 (253)
T PRK13768 5 VFFLGTAGSGKTTLVGALSDWLEEQGYDVAIVN 37 (253)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 999899999889999999999997699759997
No 429
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.97 E-value=0.0055 Score=37.77 Aligned_cols=22 Identities=41% Similarity=0.638 Sum_probs=19.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7997378855778999999861
Q gi|254780552|r 57 VLFVGPPGLGKTTLAQVVAREL 78 (334)
Q Consensus 57 ~Lf~GPpG~GKTtlA~iiA~~l 78 (334)
+-+.||.||||||+.++|+.-.
T Consensus 29 ~~ivGpSG~GKSTllr~i~Gl~ 50 (178)
T cd03229 29 VALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred EEEECCCCCHHHHHHHHHHCCC
T ss_conf 9999999983999999998599
No 430
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=95.97 E-value=0.0061 Score=37.50 Aligned_cols=23 Identities=43% Similarity=0.668 Sum_probs=20.1
Q ss_pred EEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 99737885577899999986189
Q gi|254780552|r 58 LFVGPPGLGKTTLAQVVARELGV 80 (334)
Q Consensus 58 Lf~GPpG~GKTtlA~iiA~~l~~ 80 (334)
-..||+|+||||+|+.|++.++.
T Consensus 3 gIaG~SgSGKTT~a~~L~~~l~~ 25 (179)
T cd02028 3 GIAGPSGSGKTTFAKKLSNQLRV 25 (179)
T ss_pred EEECCCCCCHHHHHHHHHHHHHH
T ss_conf 99898977899999999999846
No 431
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=95.94 E-value=0.0054 Score=37.82 Aligned_cols=22 Identities=45% Similarity=0.741 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7997378855778999999861
Q gi|254780552|r 57 VLFVGPPGLGKTTLAQVVAREL 78 (334)
Q Consensus 57 ~Lf~GPpG~GKTtlA~iiA~~l 78 (334)
+-+.||.||||||+.++||.-.
T Consensus 33 ~~llGpsG~GKTTllr~iaGl~ 54 (358)
T PRK11650 33 IVLVGPSGCGKSTLLRMVAGLE 54 (358)
T ss_pred EEEECCCCCHHHHHHHHHHCCC
T ss_conf 9999998636999999997699
No 432
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=95.93 E-value=0.013 Score=35.56 Aligned_cols=62 Identities=31% Similarity=0.432 Sum_probs=40.5
Q ss_pred CEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHH
Q ss_conf 0799737885577899999986189853125764433467666666410163788875761698999999
Q gi|254780552|r 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEIL 125 (334)
Q Consensus 56 h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~~~~~~~~dl~~~~~~~~~~~vlfiDEihrl~~~~q~~L 125 (334)
-+...|-||+||||+.+...+++ ..++.+| -+|+--- ...+.+-|---||+..++...|--|
T Consensus 6 vvvitGVpGvGKTTVl~~~~~~l-~~~~ivN------yG~~Mle-~A~k~glve~rD~~Rklp~e~Q~~l 67 (189)
T COG2019 6 VVVITGVPGVGKTTVLKIALKEL-VKHKIVN------YGDLMLE-IAKKKGLVEHRDEMRKLPLENQREL 67 (189)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH-HHCEEEE------HHHHHHH-HHHHHCCCCCHHHHHCCCHHHHHHH
T ss_conf 99997579887266999999877-5220000------7699999-9998387202898852988899999
No 433
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=95.92 E-value=0.0059 Score=37.56 Aligned_cols=21 Identities=38% Similarity=0.582 Sum_probs=18.7
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q ss_conf 799737885577899999986
Q gi|254780552|r 57 VLFVGPPGLGKTTLAQVVARE 77 (334)
Q Consensus 57 ~Lf~GPpG~GKTtlA~iiA~~ 77 (334)
+.+.||.|+||||+.++|+.-
T Consensus 27 ~~i~GpSGsGKSTLL~~i~gl 47 (206)
T TIGR03608 27 VAIVGESGSGKSTLLNIIGLL 47 (206)
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999879997099999999759
No 434
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=95.92 E-value=0.0056 Score=37.70 Aligned_cols=22 Identities=45% Similarity=0.700 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7997378855778999999861
Q gi|254780552|r 57 VLFVGPPGLGKTTLAQVVAREL 78 (334)
Q Consensus 57 ~Lf~GPpG~GKTtlA~iiA~~l 78 (334)
+-+.||.|+||||+.|+||.-.
T Consensus 31 ~~llGpSGsGKSTLlr~iaGL~ 52 (352)
T PRK10851 31 VALLGPSGSGKTTLLRIIAGLE 52 (352)
T ss_pred EEEECCCCCHHHHHHHHHHCCC
T ss_conf 9999999846999999997699
No 435
>PRK00698 tmk thymidylate kinase; Validated
Probab=95.92 E-value=0.036 Score=32.76 Aligned_cols=24 Identities=29% Similarity=0.429 Sum_probs=21.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 799737885577899999986189
Q gi|254780552|r 57 VLFVGPPGLGKTTLAQVVARELGV 80 (334)
Q Consensus 57 ~Lf~GPpG~GKTtlA~iiA~~l~~ 80 (334)
+.|.|+.|+||||.++.+++.+..
T Consensus 6 IviEGiDGsGKsTq~~~L~~~L~~ 29 (204)
T PRK00698 6 ITIEGIDGAGKSTQIELLAERLEE 29 (204)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 999889999899999999999996
No 436
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=95.92 E-value=0.0057 Score=37.68 Aligned_cols=22 Identities=27% Similarity=0.605 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7997378855778999999861
Q gi|254780552|r 57 VLFVGPPGLGKTTLAQVVAREL 78 (334)
Q Consensus 57 ~Lf~GPpG~GKTtlA~iiA~~l 78 (334)
+-+.||+||||||+.|+|+.-.
T Consensus 57 ~~ivG~SGsGKSTLlr~i~gL~ 78 (400)
T PRK10070 57 FVIMGLSGSGKSTMVRLLNRLI 78 (400)
T ss_pred EEEECCCCCHHHHHHHHHHCCC
T ss_conf 9999999846999999997599
No 437
>PRK05480 uridine kinase; Provisional
Probab=95.89 E-value=0.0077 Score=36.86 Aligned_cols=24 Identities=42% Similarity=0.547 Sum_probs=21.4
Q ss_pred EEECCCCCCHHHHHHHHHHHCCCC
Q ss_conf 997378855778999999861898
Q gi|254780552|r 58 LFVGPPGLGKTTLAQVVARELGVN 81 (334)
Q Consensus 58 Lf~GPpG~GKTtlA~iiA~~l~~~ 81 (334)
-..|++|+||||+|+.|++.++..
T Consensus 10 gIaG~SgSGKTT~a~~L~~~l~~~ 33 (209)
T PRK05480 10 GIAGGSGSGKTTVASTIYEELGDE 33 (209)
T ss_pred EEECCCCCCHHHHHHHHHHHCCCC
T ss_conf 998999778999999999980868
No 438
>KOG0926 consensus
Probab=95.88 E-value=0.041 Score=32.45 Aligned_cols=15 Identities=47% Similarity=0.667 Sum_probs=13.2
Q ss_pred CCEEEECCCCCCHHH
Q ss_conf 707997378855778
Q gi|254780552|r 55 DHVLFVGPPGLGKTT 69 (334)
Q Consensus 55 ~h~Lf~GPpG~GKTt 69 (334)
+-+|.+|-.|+||||
T Consensus 272 ~vvIIcGeTGsGKTT 286 (1172)
T KOG0926 272 PVVIICGETGSGKTT 286 (1172)
T ss_pred CEEEEECCCCCCCCC
T ss_conf 749995488888644
No 439
>PRK08099 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=95.88 E-value=0.0086 Score=36.58 Aligned_cols=29 Identities=24% Similarity=0.259 Sum_probs=26.1
Q ss_pred CEEEECCCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 07997378855778999999861898531
Q gi|254780552|r 56 HVLFVGPPGLGKTTLAQVVARELGVNFRS 84 (334)
Q Consensus 56 h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~ 84 (334)
-+++.||.-||||||++-+|+.+|+++..
T Consensus 233 kVvIlG~ESTGKTTL~~~LA~~ynT~~v~ 261 (411)
T PRK08099 233 TVAILGGESSGKSTLVNKLANIFNTTSAW 261 (411)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCCH
T ss_conf 89998999888899999999997899518
No 440
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=95.88 E-value=0.018 Score=34.63 Aligned_cols=23 Identities=48% Similarity=0.671 Sum_probs=8.6
Q ss_pred EECCCCCCHHHHHHHHHHHCCCC
Q ss_conf 97378855778999999861898
Q gi|254780552|r 59 FVGPPGLGKTTLAQVVARELGVN 81 (334)
Q Consensus 59 f~GPpG~GKTtlA~iiA~~l~~~ 81 (334)
.-||.|+||+|+|+.+|+.+|+.
T Consensus 447 IDGpagsGKsT~ak~lA~~l~~~ 469 (662)
T PRK11860 447 IDGPTASGKGTLAAAVAQALGYH 469 (662)
T ss_pred EECCCCCCHHHHHHHHHHHHCCC
T ss_conf 65787568689999999995996
No 441
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=95.86 E-value=0.0099 Score=36.21 Aligned_cols=25 Identities=36% Similarity=0.640 Sum_probs=21.1
Q ss_pred CEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 0799737885577899999986189
Q gi|254780552|r 56 HVLFVGPPGLGKTTLAQVVARELGV 80 (334)
Q Consensus 56 h~Lf~GPpG~GKTtlA~iiA~~l~~ 80 (334)
.+-+.||.|+||||+++++.+....
T Consensus 343 ~vaIVG~SGsGKSTLl~LL~g~y~p 367 (569)
T PRK10789 343 MLGICGPTGSGKSTLLSLIQRHFDV 367 (569)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 8998799999879999999977642
No 442
>pfam01202 SKI Shikimate kinase.
Probab=95.86 E-value=0.0053 Score=37.85 Aligned_cols=25 Identities=40% Similarity=0.666 Sum_probs=22.3
Q ss_pred CCCCHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 8855778999999861898531257
Q gi|254780552|r 63 PGLGKTTLAQVVARELGVNFRSTSG 87 (334)
Q Consensus 63 pG~GKTtlA~iiA~~l~~~~~~~s~ 87 (334)
+|+||||+++.+|+.++++|+-+..
T Consensus 1 mGsGKstigk~LA~~L~~~fiD~D~ 25 (158)
T pfam01202 1 MGAGKTTIGRLLAKALGLPFIDTDQ 25 (158)
T ss_pred CCCCHHHHHHHHHHHHCCCEEECHH
T ss_conf 9897799999999996999788729
No 443
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=95.86 E-value=0.0063 Score=37.42 Aligned_cols=22 Identities=41% Similarity=0.723 Sum_probs=19.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7997378855778999999861
Q gi|254780552|r 57 VLFVGPPGLGKTTLAQVVAREL 78 (334)
Q Consensus 57 ~Lf~GPpG~GKTtlA~iiA~~l 78 (334)
+-+.||.||||||+.++++.-+
T Consensus 30 ~~lvGpnGaGKSTLl~~i~Gl~ 51 (255)
T PRK11248 30 LVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred EEEECCCCCHHHHHHHHHHCCC
T ss_conf 9999999846999999997599
No 444
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=95.84 E-value=0.0066 Score=37.30 Aligned_cols=21 Identities=38% Similarity=0.703 Sum_probs=18.6
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q ss_conf 799737885577899999986
Q gi|254780552|r 57 VLFVGPPGLGKTTLAQVVARE 77 (334)
Q Consensus 57 ~Lf~GPpG~GKTtlA~iiA~~ 77 (334)
+-+.||.|+||||+.++|+.-
T Consensus 29 ~~ivGpSGsGKSTLL~~i~gL 49 (213)
T cd03262 29 VVIIGPSGSGKSTLLRCINLL 49 (213)
T ss_pred EEEECCCCCHHHHHHHHHHCC
T ss_conf 999999984499999999819
No 445
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=95.84 E-value=0.0064 Score=37.34 Aligned_cols=23 Identities=39% Similarity=0.587 Sum_probs=19.8
Q ss_pred CEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 07997378855778999999861
Q gi|254780552|r 56 HVLFVGPPGLGKTTLAQVVAREL 78 (334)
Q Consensus 56 h~Lf~GPpG~GKTtlA~iiA~~l 78 (334)
.+-+.||.|+||||+.++|+.-+
T Consensus 32 ~~~iiG~sGsGKTTll~~i~Gl~ 54 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred EEEEECCCCCHHHHHHHHHHCCC
T ss_conf 99999999986999999996699
No 446
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=95.83 E-value=0.0082 Score=36.72 Aligned_cols=25 Identities=24% Similarity=0.522 Sum_probs=19.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCC
Q ss_conf 7997378855778999999861898
Q gi|254780552|r 57 VLFVGPPGLGKTTLAQVVARELGVN 81 (334)
Q Consensus 57 ~Lf~GPpG~GKTtlA~iiA~~l~~~ 81 (334)
++++||+|+||||+.+.+-....-.
T Consensus 5 ivvsgPSGaGK~Tli~~l~~~~~~~ 29 (184)
T PRK10078 5 IWLMGPSGSGKDSLLAALRQREQTQ 29 (184)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCC
T ss_conf 9998998699999999998448998
No 447
>KOG0923 consensus
Probab=95.82 E-value=0.0057 Score=37.69 Aligned_cols=71 Identities=37% Similarity=0.592 Sum_probs=38.1
Q ss_pred EEEECCCCCCHHH------------------------------HHHHHHHHCCCCCCCCCCCCC-------CC-------
Q ss_conf 7997378855778------------------------------999999861898531257644-------33-------
Q gi|254780552|r 57 VLFVGPPGLGKTT------------------------------LAQVVARELGVNFRSTSGPVI-------AK------- 92 (334)
Q Consensus 57 ~Lf~GPpG~GKTt------------------------------lA~iiA~~l~~~~~~~s~~~~-------~~------- 92 (334)
++..|-+|+|||| +|--+|.|||+.+..--|-.| ++
T Consensus 283 LiI~GeTGSGKTTQiPQyL~EaGytk~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG~eVGYsIRFEdcTSekTvlKYMT 362 (902)
T KOG0923 283 LIIVGETGSGKTTQIPQYLYEAGYTKGGKKIGCTQPRRVAAMSVAARVAEEMGVKLGHEVGYSIRFEDCTSEKTVLKYMT 362 (902)
T ss_pred EEEECCCCCCCCCCCCHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCEEEEEEC
T ss_conf 99975788986445628988542135894674068506887779999999857401431444888503567412243224
Q ss_pred HHH-HHHHHH--HHHCCCHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 467-666666--410163788875761698999999998
Q gi|254780552|r 93 AGD-LAALLT--NLEDRDVLFIDEIHRLSIIVEEILYPA 128 (334)
Q Consensus 93 ~~d-l~~~~~--~~~~~~vlfiDEihrl~~~~q~~Ll~~ 128 (334)
-+- ++.+++ .+..-+|++|||+|.=+-. -|+|+..
T Consensus 363 DGmLlREfL~epdLasYSViiiDEAHERTL~-TDILfgL 400 (902)
T KOG0923 363 DGMLLREFLSEPDLASYSVIIVDEAHERTLH-TDILFGL 400 (902)
T ss_pred CHHHHHHHHCCCCCCCEEEEEEEHHHHHHHH-HHHHHHH
T ss_conf 3067998714634223359996024320034-5679998
No 448
>PRK01184 hypothetical protein; Provisional
Probab=95.82 E-value=0.0082 Score=36.70 Aligned_cols=28 Identities=36% Similarity=0.698 Sum_probs=22.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCC
Q ss_conf 79973788557789999998618985312
Q gi|254780552|r 57 VLFVGPPGLGKTTLAQVVARELGVNFRST 85 (334)
Q Consensus 57 ~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~ 85 (334)
+-++|+||+||||+|.+ .+++|.+.+..
T Consensus 4 IGlTG~iGSGKstva~i-~~e~G~~vi~~ 31 (183)
T PRK01184 4 IIVTGMPGSGKGEFSKI-ARELGIPVVVM 31 (183)
T ss_pred EEEECCCCCCHHHHHHH-HHHCCCEEEEC
T ss_conf 99968998878999999-99779939986
No 449
>TIGR01420 pilT_fam twitching motility protein; InterPro: IPR006321 These represent the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction . Members of this family may be found in some species that do not have type IV pili but have related structures for DNA uptake and natural transformation. ; GO: 0005524 ATP binding, 0006810 transport.
Probab=95.82 E-value=0.0097 Score=36.25 Aligned_cols=40 Identities=35% Similarity=0.575 Sum_probs=25.2
Q ss_pred CCHH-HHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHH-HHHHHHHHCCC
Q ss_conf 3979-99999999999866146776707997378855778-99999986189
Q gi|254780552|r 31 TGQV-EACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT-LAQVVARELGV 80 (334)
Q Consensus 31 iGQ~-~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTt-lA~iiA~~l~~ 80 (334)
.|.. .++..+ +.+++| + +|++||-|.|||| ||-+| ...|.
T Consensus 112 LGLP~~v~~~~-----a~~~~G--L--iLVTGPTGSGKSTTlAsmI-DyIN~ 153 (350)
T TIGR01420 112 LGLPRPVLREL-----AERPRG--L--ILVTGPTGSGKSTTLASMI-DYINK 153 (350)
T ss_pred CCCCHHHHHHH-----HHCCCC--C--EEEECCCCCCHHHHHHHHH-HHHHC
T ss_conf 37987899999-----836699--3--8987688986789999999-78740
No 450
>pfam00006 ATP-synt_ab ATP synthase alpha/beta family, nucleotide-binding domain. This family includes the ATP synthase alpha and beta subunits, the ATP synthase associated with flagella and the termination factor Rho.
Probab=95.81 E-value=0.013 Score=35.40 Aligned_cols=27 Identities=30% Similarity=0.438 Sum_probs=22.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 799737885577899999986189853
Q gi|254780552|r 57 VLFVGPPGLGKTTLAQVVARELGVNFR 83 (334)
Q Consensus 57 ~Lf~GPpG~GKTtlA~iiA~~l~~~~~ 83 (334)
+++.||||+|||+++.-+++....+..
T Consensus 18 ~~I~g~~g~GKt~l~~~i~~~~~~~~~ 44 (213)
T pfam00006 18 IGIFGGSGTGKTVLLGMIARNAKADVV 44 (213)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 778789999889999999985661893
No 451
>pfam01443 Viral_helicase1 Viral (Superfamily 1) RNA helicase. Helicase activity for this family has been demonstrated and NTPase activity. This helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis.
Probab=95.80 E-value=0.0037 Score=38.78 Aligned_cols=70 Identities=26% Similarity=0.282 Sum_probs=36.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCC---CCCCCHHHH-----HHHHHHH--HCCCHHHHHHHHHCCHHHHHHHH
Q ss_conf 7997378855778999999861898531257---644334676-----6666641--01637888757616989999999
Q gi|254780552|r 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG---PVIAKAGDL-----AALLTNL--EDRDVLFIDEIHRLSIIVEEILY 126 (334)
Q Consensus 57 ~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~---~~~~~~~dl-----~~~~~~~--~~~~vlfiDEihrl~~~~q~~Ll 126 (334)
++.+|.||+||||+-+-+.+.-......... ....++.+. ....... ....+++|||+-.++...-+.+.
T Consensus 1 ~vV~gvpGsGKSt~I~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~iiDE~~~~~~g~l~~~~ 80 (226)
T pfam01443 1 IVVHGVPGCGKSTLIRKLLRTDLTVIRPTAELRTEGKPDLPNLNVRTVDTFLMALLKPTGKILILDEYTLLPPGYILLLA 80 (226)
T ss_pred CEEEECCCCCHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCCCCCCCEEEEHHHCCCCCCCCEEEECCCCCCCHHHHHHHH
T ss_conf 95940799988999999986478642322777655677787777537744112467887788998964566816899987
No 452
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=95.79 E-value=0.0068 Score=37.19 Aligned_cols=22 Identities=50% Similarity=0.816 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7997378855778999999861
Q gi|254780552|r 57 VLFVGPPGLGKTTLAQVVAREL 78 (334)
Q Consensus 57 ~Lf~GPpG~GKTtlA~iiA~~l 78 (334)
+-+.||.||||||+.++|+.-.
T Consensus 32 ~~llGpsG~GKSTllr~i~Gl~ 53 (369)
T PRK11000 32 VVFVGPSGCGKSTLLRMIAGLE 53 (369)
T ss_pred EEEECCCCCHHHHHHHHHHCCC
T ss_conf 9999999736999999997799
No 453
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=95.79 E-value=0.024 Score=33.80 Aligned_cols=98 Identities=17% Similarity=0.139 Sum_probs=50.3
Q ss_pred HHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCCCCCCHHHHHC--------------
Q ss_conf 788875761698999999998634751002567876520004667400552045543355454420--------------
Q gi|254780552|r 108 VLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDR-------------- 173 (334)
Q Consensus 108 vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~~~l~~~l~sR-------------- 173 (334)
..++||+|.+.+.+ .++..|..|.. ++. .++ +++-||-.....+++..+
T Consensus 187 ~~I~DEih~f~~~~--~~~~~~~~g~~---------ar~-----~~l-~~~ITT~g~~~~g~~~q~~~y~k~vl~g~~~d 249 (546)
T COG4626 187 GAIIDELHLFGKQE--DMYSEAKGGLG---------ARP-----EGL-VVYITTSGDPPAGVFKQKLQYAKDVLDGKIKD 249 (546)
T ss_pred EEEEEHHHHHCCHH--HHHHHHHHHHC---------CCC-----CCE-EEEEECCCCCCCCHHHHHHHHHHHHHCCCCCC
T ss_conf 48876375416789--99999974201---------576-----763-99996689887418999999999986698788
Q ss_pred ---CCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHH
Q ss_conf ---1206732645479999987776541210111111123320221015678
Q gi|254780552|r 174 ---FGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIA 222 (334)
Q Consensus 174 ---~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~Gd~R~A 222 (334)
|.++..++..+.-+.-+...++.-.+++..+.+-+....+++++++.-+
T Consensus 250 ~~~f~~i~e~Dd~~e~~dpe~w~kaNPnlg~sv~~~~l~s~~~ka~~~~q~~ 301 (546)
T COG4626 250 PHFFPVIYELDEEGEHDDPENWAKANPNLGVSVDEAFLYSEYRKARNAPQEA 301 (546)
T ss_pred CCEEEEEEECCCCCCCCCHHHHHHCCCCCCCEEEHHHHHHHHHHHHCCCHHC
T ss_conf 2107999976882000386777430887651420777776999873181112
No 454
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=95.79 E-value=0.006 Score=37.53 Aligned_cols=30 Identities=43% Similarity=0.411 Sum_probs=18.7
Q ss_pred EEECCCCCCHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 997378855778999999861898531257
Q gi|254780552|r 58 LFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 (334)
Q Consensus 58 Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~ 87 (334)
=+.|-.|+||||+|+.|-.-+..+....+|
T Consensus 39 gIvGESGsGKSt~a~~i~gll~~~~~~~~G 68 (539)
T COG1123 39 GIVGESGSGKSTLALALMGLLPEGGRITSG 68 (539)
T ss_pred EEECCCCCCHHHHHHHHHCCCCCCCCCCCE
T ss_conf 998689888899999985548887864441
No 455
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.78 E-value=0.0069 Score=37.15 Aligned_cols=22 Identities=32% Similarity=0.440 Sum_probs=19.3
Q ss_pred EECCCCCCHHHHHHHHHHHCCC
Q ss_conf 9737885577899999986189
Q gi|254780552|r 59 FVGPPGLGKTTLAQVVARELGV 80 (334)
Q Consensus 59 f~GPpG~GKTtlA~iiA~~l~~ 80 (334)
..|+||+||||+|+.+.+.++.
T Consensus 4 IaG~sgSGKST~a~~l~~~l~~ 25 (220)
T cd02025 4 IAGSVAVGKSTTARVLQALLSR 25 (220)
T ss_pred EECCCCCCHHHHHHHHHHHHHH
T ss_conf 7889987799999999998600
No 456
>cd01919 PEPCK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).
Probab=95.76 E-value=0.0049 Score=38.08 Aligned_cols=19 Identities=42% Similarity=0.578 Sum_probs=16.4
Q ss_pred CEEEECCCCCCHHHHHHHH
Q ss_conf 0799737885577899999
Q gi|254780552|r 56 HVLFVGPPGLGKTTLAQVV 74 (334)
Q Consensus 56 h~Lf~GPpG~GKTtlA~ii 74 (334)
..+|.||+|||||||+-.-
T Consensus 219 ~a~ffGlSGTGKTTLS~d~ 237 (515)
T cd01919 219 VLVFFGLSGTGKTTLSMDP 237 (515)
T ss_pred EEEEEECCCCCHHHHHHCC
T ss_conf 8999706666743387687
No 457
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=95.76 E-value=0.0092 Score=36.39 Aligned_cols=26 Identities=42% Similarity=0.622 Sum_probs=23.2
Q ss_pred CEEEECCCCCCHHHHHHHHHHHCCCC
Q ss_conf 07997378855778999999861898
Q gi|254780552|r 56 HVLFVGPPGLGKTTLAQVVARELGVN 81 (334)
Q Consensus 56 h~Lf~GPpG~GKTtlA~iiA~~l~~~ 81 (334)
-+...||=|+||||||+.+|+.++..
T Consensus 6 ~IvI~G~IG~GKSTLa~~La~~l~~~ 31 (216)
T COG1428 6 VIVIEGMIGAGKSTLAQALAEHLGFK 31 (216)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 89984464468789999999883885
No 458
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=95.74 E-value=0.011 Score=35.92 Aligned_cols=25 Identities=36% Similarity=0.499 Sum_probs=21.3
Q ss_pred CEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 0799737885577899999986189
Q gi|254780552|r 56 HVLFVGPPGLGKTTLAQVVARELGV 80 (334)
Q Consensus 56 h~Lf~GPpG~GKTtlA~iiA~~l~~ 80 (334)
.+-+.||.|+||||+++++.+-...
T Consensus 369 ~vaIVG~SGsGKSTL~~LL~rly~p 393 (593)
T PRK10790 369 FVALVGHTGSGKSTLASLLMGYYPL 393 (593)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 8998799988689999999985567
No 459
>PRK12338 hypothetical protein; Provisional
Probab=95.73 E-value=0.0099 Score=36.20 Aligned_cols=27 Identities=37% Similarity=0.614 Sum_probs=24.2
Q ss_pred CEEEECCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 079973788557789999998618985
Q gi|254780552|r 56 HVLFVGPPGLGKTTLAQVVARELGVNF 82 (334)
Q Consensus 56 h~Lf~GPpG~GKTtlA~iiA~~l~~~~ 82 (334)
.+|+.|..||||+|+|..+|+-||..-
T Consensus 6 iILiGGtSGvGKSTlAseLAsRLgI~t 32 (320)
T PRK12338 6 VILIGSASGIGKSTIASEVARRLNIKH 32 (320)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCE
T ss_conf 999706888768889999998519871
No 460
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=95.72 E-value=0.0084 Score=36.65 Aligned_cols=22 Identities=45% Similarity=0.754 Sum_probs=19.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7997378855778999999861
Q gi|254780552|r 57 VLFVGPPGLGKTTLAQVVAREL 78 (334)
Q Consensus 57 ~Lf~GPpG~GKTtlA~iiA~~l 78 (334)
+-+.||.|+||||+.++|+..+
T Consensus 36 ~~i~G~sGsGKSTLlk~i~gl~ 57 (225)
T PRK10247 36 KLITGPSGCGKSTLLKIVASLI 57 (225)
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999999999999996466
No 461
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=95.71 E-value=0.011 Score=35.81 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=19.0
Q ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 079973788557789999998618
Q gi|254780552|r 56 HVLFVGPPGLGKTTLAQVVARELG 79 (334)
Q Consensus 56 h~Lf~GPpG~GKTtlA~iiA~~l~ 79 (334)
.+-+.||.|+||||+++++++-.+
T Consensus 351 ~vaiVG~SGsGKSTL~~LL~r~y~ 374 (547)
T PRK10522 351 LLFLIGGNGSGKSTLAMLLTGLYQ 374 (547)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 899989999977999999828966
No 462
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.71 E-value=0.011 Score=35.99 Aligned_cols=25 Identities=40% Similarity=0.643 Sum_probs=22.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCC
Q ss_conf 7997378855778999999861898
Q gi|254780552|r 57 VLFVGPPGLGKTTLAQVVARELGVN 81 (334)
Q Consensus 57 ~Lf~GPpG~GKTtlA~iiA~~l~~~ 81 (334)
+-..|++|+||||+|+.|...++.+
T Consensus 11 IgIaG~SgSGKTTv~~~l~~~~~~~ 35 (218)
T COG0572 11 IGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 9986798778899999999982867
No 463
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.71 E-value=0.015 Score=35.11 Aligned_cols=22 Identities=27% Similarity=0.361 Sum_probs=18.1
Q ss_pred CEEEECCCCCCHHHHHHHHHHH
Q ss_conf 0799737885577899999986
Q gi|254780552|r 56 HVLFVGPPGLGKTTLAQVVARE 77 (334)
Q Consensus 56 h~Lf~GPpG~GKTtlA~iiA~~ 77 (334)
.+|+.||||+|||++|.-++.+
T Consensus 34 ~~li~G~~G~GKt~~~~~f~~~ 55 (241)
T PRK06067 34 LILIEGENDTGKSVLSQQFVWG 55 (241)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999807998879999999999
No 464
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.69 E-value=0.0084 Score=36.65 Aligned_cols=21 Identities=33% Similarity=0.684 Sum_probs=18.6
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q ss_conf 799737885577899999986
Q gi|254780552|r 57 VLFVGPPGLGKTTLAQVVARE 77 (334)
Q Consensus 57 ~Lf~GPpG~GKTtlA~iiA~~ 77 (334)
+-+.||.|+||||+.++|+.-
T Consensus 29 ~~iiG~SGsGKSTll~~i~gL 49 (235)
T cd03261 29 LAIIGPSGSGKSTLLRLIVGL 49 (235)
T ss_pred EEEECCCCCHHHHHHHHHHCC
T ss_conf 999999997299999999759
No 465
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=95.68 E-value=0.0067 Score=37.24 Aligned_cols=33 Identities=30% Similarity=0.625 Sum_probs=26.4
Q ss_pred CCCCEE--EECCCCCCHHHHHHHHHHHCCCCCCCC
Q ss_conf 767079--973788557789999998618985312
Q gi|254780552|r 53 ALDHVL--FVGPPGLGKTTLAQVVARELGVNFRST 85 (334)
Q Consensus 53 ~~~h~L--f~GPpG~GKTtlA~iiA~~l~~~~~~~ 85 (334)
++..++ .-||.|.||+|+|+.+|+.||+.+.-+
T Consensus 31 ~~~~iIIAIDGPAGSGKSTVAk~lA~~LG~~yLDT 65 (863)
T PRK12269 31 PMGTVIIALDGPAGSGKSSVCRLLASRLGAQCLNT 65 (863)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHCCEEECC
T ss_conf 67988999868986788999999999829958874
No 466
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=95.68 E-value=0.01 Score=36.12 Aligned_cols=24 Identities=42% Similarity=0.714 Sum_probs=20.5
Q ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 079973788557789999998618
Q gi|254780552|r 56 HVLFVGPPGLGKTTLAQVVARELG 79 (334)
Q Consensus 56 h~Lf~GPpG~GKTtlA~iiA~~l~ 79 (334)
.+-+.||.|+||||+++++.+-..
T Consensus 363 ~vaiVG~SGsGKSTL~~LL~gly~ 386 (585)
T PRK13657 363 TVAIVGPTGAGKSTLINLLHRVFD 386 (585)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 899988989869999999860157
No 467
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=95.67 E-value=0.0084 Score=36.64 Aligned_cols=22 Identities=41% Similarity=0.572 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7997378855778999999861
Q gi|254780552|r 57 VLFVGPPGLGKTTLAQVVAREL 78 (334)
Q Consensus 57 ~Lf~GPpG~GKTtlA~iiA~~l 78 (334)
+-+.||.|+||||++++++.-+
T Consensus 34 ~~iiG~sGsGKSTLl~~i~Gl~ 55 (228)
T cd03257 34 LGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred EEEECCCCCHHHHHHHHHHCCC
T ss_conf 9999999986999999997289
No 468
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.66 E-value=0.0083 Score=36.67 Aligned_cols=22 Identities=45% Similarity=0.718 Sum_probs=19.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7997378855778999999861
Q gi|254780552|r 57 VLFVGPPGLGKTTLAQVVAREL 78 (334)
Q Consensus 57 ~Lf~GPpG~GKTtlA~iiA~~l 78 (334)
+-+.||.|+||||+.++|+.-.
T Consensus 33 ~~iiGpsGsGKSTLl~~i~Gl~ 54 (220)
T cd03293 33 VALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred EEEECCCCCHHHHHHHHHHCCC
T ss_conf 9999999957999999997599
No 469
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.64 E-value=0.0087 Score=36.55 Aligned_cols=23 Identities=43% Similarity=0.687 Sum_probs=19.9
Q ss_pred CEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 07997378855778999999861
Q gi|254780552|r 56 HVLFVGPPGLGKTTLAQVVAREL 78 (334)
Q Consensus 56 h~Lf~GPpG~GKTtlA~iiA~~l 78 (334)
.+..-||+||||||+-+++|.-+
T Consensus 33 ~vv~lGpSGcGKTTLLnl~AGf~ 55 (259)
T COG4525 33 LVVVLGPSGCGKTTLLNLIAGFV 55 (259)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89997688865788999986275
No 470
>PRK10419 nikE nickel transporter ATP-binding protein; Provisional
Probab=95.64 E-value=0.007 Score=37.14 Aligned_cols=21 Identities=38% Similarity=0.616 Sum_probs=18.6
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q ss_conf 799737885577899999986
Q gi|254780552|r 57 VLFVGPPGLGKTTLAQVVARE 77 (334)
Q Consensus 57 ~Lf~GPpG~GKTtlA~iiA~~ 77 (334)
+-+.||.|+||||++++|+.-
T Consensus 41 l~ivGeSGsGKSTL~r~i~gl 61 (266)
T PRK10419 41 VALLGRSGCGKSTLARLLVGL 61 (266)
T ss_pred EEEECCCCCHHHHHHHHHHCC
T ss_conf 999999997799999999669
No 471
>TIGR00630 uvra excinuclease ABC, A subunit; InterPro: IPR004602 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products . The UvrC protein contain 4 conserved regions: a central region which interact with UvrB (Uvr domain), a Helix hairpin Helix (HhH) domain important for 5 prime incision of damage DNA and the homology regions 1 and 2 of unknown function. UvrC homology region 2 is specific for UvrC proteins, whereas UvrC homology region 1 is also shared by few other nucleases.; GO: 0009381 excinuclease ABC activity, 0006289 nucleotide-excision repair, 0009380 excinuclease repair complex.
Probab=95.64 E-value=0.016 Score=34.85 Aligned_cols=19 Identities=42% Similarity=0.684 Sum_probs=16.3
Q ss_pred EEEECCCCCCHHHHH--HHHH
Q ss_conf 799737885577899--9999
Q gi|254780552|r 57 VLFVGPPGLGKTTLA--QVVA 75 (334)
Q Consensus 57 ~Lf~GPpG~GKTtlA--~iiA 75 (334)
++|+|.+|.||.||| .|.|
T Consensus 25 VViTG~SGSGKSSLAFDTiYA 45 (956)
T TIGR00630 25 VVITGLSGSGKSSLAFDTIYA 45 (956)
T ss_pred EEEECCCCCCCHHHHHHHHHH
T ss_conf 999745688615456546766
No 472
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.63 E-value=0.0099 Score=36.21 Aligned_cols=65 Identities=26% Similarity=0.345 Sum_probs=35.4
Q ss_pred CCCCCHHHHCCHHHHH--HHHHHHHHHHHHCCCCCCCE-EEECCCCCCHHHHHHHHHHHC---CCCCCCCCC
Q ss_conf 0789877823979999--99999999866146776707-997378855778999999861---898531257
Q gi|254780552|r 22 LRPRTLEEFTGQVEAC--SNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVAREL---GVNFRSTSG 87 (334)
Q Consensus 22 lRP~~l~dviGQ~~~~--~~l~~~i~a~~~~~~~~~h~-Lf~GPpG~GKTtlA~iiA~~l---~~~~~~~s~ 87 (334)
-.|..++|+--.+.-. ..+..+ .-....|-.+.++ |+-|.||.||+||..-+|..+ +.....+||
T Consensus 48 ~~~~~l~~v~~~~~~R~~Tgi~El-DRVLGGGiVpGSvvLlgGePGIGKSTLLLQia~~la~~~~~vLYvSG 118 (372)
T cd01121 48 SKVIPLSDIEAEEEERIPTGIEEL-DRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSG 118 (372)
T ss_pred CCCEEHHHCCCCCCCCCCCCCHHH-HHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 775573443656555444783666-54005773067179982599886889999999999863993899824
No 473
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.61 E-value=0.0096 Score=36.28 Aligned_cols=22 Identities=41% Similarity=0.581 Sum_probs=19.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7997378855778999999861
Q gi|254780552|r 57 VLFVGPPGLGKTTLAQVVAREL 78 (334)
Q Consensus 57 ~Lf~GPpG~GKTtlA~iiA~~l 78 (334)
+.+.||-|+||||+.++|+..+
T Consensus 30 ~~l~G~NGaGKSTLlkli~Gl~ 51 (200)
T PRK13540 30 LHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9998899987999999997785
No 474
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.59 E-value=0.0077 Score=36.88 Aligned_cols=22 Identities=41% Similarity=0.594 Sum_probs=19.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7997378855778999999861
Q gi|254780552|r 57 VLFVGPPGLGKTTLAQVVAREL 78 (334)
Q Consensus 57 ~Lf~GPpG~GKTtlA~iiA~~l 78 (334)
+-+.||.|+||||+.++|+.-.
T Consensus 27 ~~ilGpSGsGKSTLl~li~Gl~ 48 (211)
T cd03298 27 TAIVGPSGSGKSTLLNLIAGFE 48 (211)
T ss_pred EEEECCCCCHHHHHHHHHHCCC
T ss_conf 9999999955999999997699
No 475
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=95.59 E-value=0.012 Score=35.79 Aligned_cols=27 Identities=37% Similarity=0.555 Sum_probs=23.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 799737885577899999986189853
Q gi|254780552|r 57 VLFVGPPGLGKTTLAQVVARELGVNFR 83 (334)
Q Consensus 57 ~Lf~GPpG~GKTtlA~iiA~~l~~~~~ 83 (334)
+.+.|+-|+||||+++.+++.++..+.
T Consensus 2 I~iEG~iGsGKSTl~~~L~~~~~~~~~ 28 (193)
T cd01673 2 IVVEGNIGAGKSTLAKELAEHLGYEVV 28 (193)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCEEE
T ss_conf 899888888899999999996699489
No 476
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=95.58 E-value=0.033 Score=32.97 Aligned_cols=47 Identities=26% Similarity=0.369 Sum_probs=30.1
Q ss_pred HCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHH
Q ss_conf 5078987782397999999999999866146776707997378855778999999
Q gi|254780552|r 21 LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA 75 (334)
Q Consensus 21 ~lRP~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA 75 (334)
..||.-....|--..+...|.... . -.-++|+-|.|.||||++--.+
T Consensus 12 ~~~P~~~~~~v~R~rL~~~L~~~~---~-----~RL~li~APAGfGKttl~aq~~ 58 (894)
T COG2909 12 LVRPVRPDNYVVRPRLLDRLRRAN---D-----YRLILISAPAGFGKTTLLAQWR 58 (894)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHCC---C-----CEEEEEECCCCCCHHHHHHHHH
T ss_conf 479999500265389999986077---8-----4389986788775889999999
No 477
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=95.57 E-value=0.014 Score=35.33 Aligned_cols=22 Identities=41% Similarity=0.626 Sum_probs=18.3
Q ss_pred CEEEECCCCCCHHHHHHHHHHH
Q ss_conf 0799737885577899999986
Q gi|254780552|r 56 HVLFVGPPGLGKTTLAQVVARE 77 (334)
Q Consensus 56 h~Lf~GPpG~GKTtlA~iiA~~ 77 (334)
++-+.||.|+||||+++++.+-
T Consensus 378 ~vaIVG~SGsGKSTl~~LL~g~ 399 (588)
T PRK11174 378 RVALVGPSGAGKTSLLNALLGF 399 (588)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999899986499999999872
No 478
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=95.56 E-value=0.01 Score=36.09 Aligned_cols=22 Identities=41% Similarity=0.585 Sum_probs=19.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7997378855778999999861
Q gi|254780552|r 57 VLFVGPPGLGKTTLAQVVAREL 78 (334)
Q Consensus 57 ~Lf~GPpG~GKTtlA~iiA~~l 78 (334)
+-+.||-|+||||+.++|+.-+
T Consensus 29 ~~l~G~NGsGKSTLlk~i~Gl~ 50 (201)
T cd03231 29 LQVTGPNGSGKTTLLRILAGLS 50 (201)
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999999999999996677
No 479
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=95.56 E-value=0.0097 Score=36.25 Aligned_cols=21 Identities=48% Similarity=0.918 Sum_probs=18.7
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q ss_conf 799737885577899999986
Q gi|254780552|r 57 VLFVGPPGLGKTTLAQVVARE 77 (334)
Q Consensus 57 ~Lf~GPpG~GKTtlA~iiA~~ 77 (334)
+.+.||.|+||||+.++++.-
T Consensus 30 v~i~GpSGsGKSTLl~~i~gl 50 (214)
T cd03292 30 VFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred EEEECCCCCHHHHHHHHHHCC
T ss_conf 999979995399999999629
No 480
>PRK10418 nikD nickel transporter ATP-binding protein; Provisional
Probab=95.53 E-value=0.0086 Score=36.58 Aligned_cols=33 Identities=30% Similarity=0.413 Sum_probs=25.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 799737885577899999986189853125764
Q gi|254780552|r 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPV 89 (334)
Q Consensus 57 ~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~~~ 89 (334)
+-+.||.|+||||+++.+..-+.......+|.+
T Consensus 32 ~aiiG~SGsGKStl~k~llgll~~~~~~~~G~i 64 (254)
T PRK10418 32 LALVGGSGSGKSLTCAAALGILPAGVRQTAGRV 64 (254)
T ss_pred EEEECCCCCHHHHHHHHHHCCCCCCCCEECCEE
T ss_conf 999999987899999999579988984157899
No 481
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.52 E-value=0.011 Score=35.97 Aligned_cols=22 Identities=45% Similarity=0.738 Sum_probs=19.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7997378855778999999861
Q gi|254780552|r 57 VLFVGPPGLGKTTLAQVVAREL 78 (334)
Q Consensus 57 ~Lf~GPpG~GKTtlA~iiA~~l 78 (334)
+.+.||-|+||||+.++|+..+
T Consensus 31 ~~l~G~NGaGKTTLlk~i~Gl~ 52 (206)
T PRK13539 31 LVLTGPNGSGKTTLLRLLAGLL 52 (206)
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9998999998999999995887
No 482
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=95.51 E-value=0.045 Score=32.18 Aligned_cols=35 Identities=43% Similarity=0.588 Sum_probs=26.9
Q ss_pred CEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 079973788557789999998618985312576443
Q gi|254780552|r 56 HVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA 91 (334)
Q Consensus 56 h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~~~~~ 91 (334)
-++|.|+=|.||||++|-+++.++..-...| |.++
T Consensus 27 Vv~L~GdLGAGKTtf~rgi~~~Lg~~~~V~S-PTFt 61 (149)
T COG0802 27 VVLLSGDLGAGKTTLVRGIAKGLGVDGNVKS-PTFT 61 (149)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCC-CCEE
T ss_conf 8999778768859999999997499975249-8761
No 483
>TIGR00954 3a01203 Peroxysomal long chain fatty acyl transporter; InterPro: IPR005283 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). The members of this family are integral membrane proteins and they are involved in the import of activated long-chain fatty acids from the cytosol to the peroxisomal matrix. ; GO: 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane.
Probab=95.50 E-value=0.01 Score=36.13 Aligned_cols=22 Identities=36% Similarity=0.760 Sum_probs=20.5
Q ss_pred CEEEECCCCCCHHHHHHHHHHH
Q ss_conf 0799737885577899999986
Q gi|254780552|r 56 HVLFVGPPGLGKTTLAQVVARE 77 (334)
Q Consensus 56 h~Lf~GPpG~GKTtlA~iiA~~ 77 (334)
|+|.+||=||||.||=|+|+.-
T Consensus 558 ~lLi~GPNGCGKSSLFRiLGeL 579 (788)
T TIGR00954 558 HLLICGPNGCGKSSLFRILGEL 579 (788)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 6687688998647899998643
No 484
>CHL00179 consensus
Probab=95.48 E-value=0.078 Score=30.74 Aligned_cols=30 Identities=20% Similarity=0.303 Sum_probs=26.3
Q ss_pred CEEEECCCCCCHHHHHHHHHHHCCCCCCCC
Q ss_conf 079973788557789999998618985312
Q gi|254780552|r 56 HVLFVGPPGLGKTTLAQVVARELGVNFRST 85 (334)
Q Consensus 56 h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~ 85 (334)
.+|+.||.|||..-|++-+|...-++++.+
T Consensus 1602 GILvIGsigTGRSYLVK~LAanSYvPlI~I 1631 (2262)
T CHL00179 1602 GILVIGFIGTGRSYFVKYRVTNSYVPFITV 1631 (2262)
T ss_pred CEEEECCCCCCHHHHHHHHHHCCCCCCEEE
T ss_conf 627978776666899988764253751895
No 485
>pfam03205 MobB Molybdopterin guanine dinucleotide synthesis protein B. This protein contains a P-loop.
Probab=95.46 E-value=0.014 Score=35.36 Aligned_cols=23 Identities=48% Similarity=0.585 Sum_probs=20.3
Q ss_pred CEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 07997378855778999999861
Q gi|254780552|r 56 HVLFVGPPGLGKTTLAQVVAREL 78 (334)
Q Consensus 56 h~Lf~GPpG~GKTtlA~iiA~~l 78 (334)
-+++.||.++||||+++.+++.+
T Consensus 2 ~v~i~G~~~sGKttl~~~L~~~~ 24 (122)
T pfam03205 2 IVLVVGPKDSGKTTLIRKLLNYL 24 (122)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 79999489998999999999999
No 486
>PRK10744 phosphate transporter subunit; Provisional
Probab=95.45 E-value=0.01 Score=36.12 Aligned_cols=47 Identities=28% Similarity=0.504 Sum_probs=29.8
Q ss_pred CHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 877823979999999999998661467767079973788557789999998618
Q gi|254780552|r 26 TLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG 79 (334)
Q Consensus 26 ~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~ 79 (334)
++.-..|+.++++.+..-+. .|+ -+-+.||.|+||||++++|+.-..
T Consensus 15 ~ls~~yg~~~aL~~vsl~i~----~Ge---~~~liG~nGaGKSTLlk~i~gl~~ 61 (257)
T PRK10744 15 DLNFYYGKFHALKNINLDIA----KNQ---VTAFIGPSGCGKSTLLRTFNKMYE 61 (257)
T ss_pred EEEEEECCEEEECCCEEEEC----CCC---EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 68999699767814289988----998---999999999819999999987651
No 487
>pfam10236 DAP3 Mitochondrial ribosomal death-associated protein 3. This is a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=95.45 E-value=0.019 Score=34.52 Aligned_cols=32 Identities=28% Similarity=0.365 Sum_probs=23.5
Q ss_pred CCEEEECCCCCCHHH-HHHHHHHHCCCCCCCCC
Q ss_conf 707997378855778-99999986189853125
Q gi|254780552|r 55 DHVLFVGPPGLGKTT-LAQVVARELGVNFRSTS 86 (334)
Q Consensus 55 ~h~Lf~GPpG~GKTt-lA~iiA~~l~~~~~~~s 86 (334)
--++++|++|||||+ |+++++....-++..+.
T Consensus 24 ~r~vL~G~~GsGKS~~L~q~v~~A~~~~wiVl~ 56 (274)
T pfam10236 24 VRFVLTGERGSGKSVLLAQAMAYALTQGWVVLH 56 (274)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCEEEEE
T ss_conf 189988979977999999999999859989998
No 488
>TIGR01618 phage_P_loop phage nucleotide-binding protein; InterPro: IPR006505 These sequences represent an uncharacterised family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of these proteins is unknown..
Probab=95.45 E-value=0.003 Score=39.39 Aligned_cols=21 Identities=38% Similarity=0.592 Sum_probs=17.7
Q ss_pred CCEEEECCCCCCHHHHHHHHH
Q ss_conf 707997378855778999999
Q gi|254780552|r 55 DHVLFVGPPGLGKTTLAQVVA 75 (334)
Q Consensus 55 ~h~Lf~GPpG~GKTtlA~iiA 75 (334)
..+|.||-||+||||+++-+.
T Consensus 14 ~~~lIYG~~G~GKTS~~K~l~ 34 (229)
T TIGR01618 14 FRYLIYGKPGLGKTSTIKYLP 34 (229)
T ss_pred CEEEEECCCCCCCCCEEEECC
T ss_conf 368887589887230566458
No 489
>pfam08423 Rad51 Rad51. Rad51 is a DNA repair and recombination protein and is a homologue of the bacterial ATPase RecA protein.
Probab=95.45 E-value=0.0099 Score=36.21 Aligned_cols=26 Identities=19% Similarity=0.197 Sum_probs=19.3
Q ss_pred CCCCCCE-EEECCCCCCHHHHHHHHHH
Q ss_conf 6776707-9973788557789999998
Q gi|254780552|r 51 AEALDHV-LFVGPPGLGKTTLAQVVAR 76 (334)
Q Consensus 51 ~~~~~h~-Lf~GPpG~GKTtlA~iiA~ 76 (334)
|-+...+ =+|||||+|||.++.-+|-
T Consensus 39 Gi~~g~ITEi~G~~gsGKTQlc~qlav 65 (261)
T pfam08423 39 GIETGSITEVFGEFRTGKTQLCHTLCV 65 (261)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 866772999989988878999999999
No 490
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=95.42 E-value=0.017 Score=34.83 Aligned_cols=31 Identities=42% Similarity=0.640 Sum_probs=21.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHC---CCCCCCCCC
Q ss_conf 7997378855778999999861---898531257
Q gi|254780552|r 57 VLFVGPPGLGKTTLAQVVAREL---GVNFRSTSG 87 (334)
Q Consensus 57 ~Lf~GPpG~GKTtlA~iiA~~l---~~~~~~~s~ 87 (334)
+.|+|+||+||||+|+.+.+.| |.....+.|
T Consensus 446 iw~tGlsgsGKstiA~~le~~L~~~g~~~~~LDG 479 (613)
T PRK05506 446 VWFTGLSGSGKSTIANLVERRLHALGRHTYVLDG 479 (613)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 9997789897479999999999977998799880
No 491
>PHA00350 putative assembly protein
Probab=95.41 E-value=0.0079 Score=36.79 Aligned_cols=15 Identities=40% Similarity=0.399 Sum_probs=12.9
Q ss_pred EEECCCCCCHHHHHH
Q ss_conf 997378855778999
Q gi|254780552|r 58 LFVGPPGLGKTTLAQ 72 (334)
Q Consensus 58 Lf~GPpG~GKTtlA~ 72 (334)
+.+|+||.|||.-|-
T Consensus 5 ~~~G~pGSyKS~~av 19 (402)
T PHA00350 5 AIVGRPGSYKSYEAV 19 (402)
T ss_pred EEECCCCCCCCEEEE
T ss_conf 982599997660110
No 492
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=95.40 E-value=0.012 Score=35.64 Aligned_cols=22 Identities=32% Similarity=0.593 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7997378855778999999861
Q gi|254780552|r 57 VLFVGPPGLGKTTLAQVVAREL 78 (334)
Q Consensus 57 ~Lf~GPpG~GKTtlA~iiA~~l 78 (334)
+-+.||.|+||||+.++|+..+
T Consensus 36 ~~ilGpnGsGKSTLl~~i~G~~ 57 (226)
T cd03234 36 MAILGSSGSGKTTLLDAISGRV 57 (226)
T ss_pred EEEECCCCCHHHHHHHHHHCCC
T ss_conf 9999899960999999996789
No 493
>COG0645 Predicted kinase [General function prediction only]
Probab=95.39 E-value=0.014 Score=35.35 Aligned_cols=27 Identities=48% Similarity=0.535 Sum_probs=23.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 799737885577899999986189853
Q gi|254780552|r 57 VLFVGPPGLGKTTLAQVVARELGVNFR 83 (334)
Q Consensus 57 ~Lf~GPpG~GKTtlA~iiA~~l~~~~~ 83 (334)
.|..|-||+||||+|+.++..++....
T Consensus 4 ~l~~Gl~GsGKstlA~~l~~~lgA~~l 30 (170)
T COG0645 4 VLVGGLPGSGKSTLARGLAELLGAIRL 30 (170)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEE
T ss_conf 997258886586887898853486687
No 494
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=95.37 E-value=0.016 Score=34.92 Aligned_cols=76 Identities=29% Similarity=0.332 Sum_probs=45.8
Q ss_pred EEEECCCCCCHHHHHHHH---HHHCCCCCCCC--CC---CCCCC-----HHHHHHHH-------HHHHCCCHHHHHHHHH
Q ss_conf 799737885577899999---98618985312--57---64433-----46766666-------6410163788875761
Q gi|254780552|r 57 VLFVGPPGLGKTTLAQVV---ARELGVNFRST--SG---PVIAK-----AGDLAALL-------TNLEDRDVLFIDEIHR 116 (334)
Q Consensus 57 ~Lf~GPpG~GKTtlA~ii---A~~l~~~~~~~--s~---~~~~~-----~~dl~~~~-------~~~~~~~vlfiDEihr 116 (334)
.+..|..|+||||+-... ...-|+..+=. +| ..+++ ..-+.... ..+..++||+|||.-+
T Consensus 365 avVvG~AGtGKStmL~aAReawEa~GyrV~GaALsGkAAegLe~~sGI~SrTlAs~e~~w~~g~~~L~~~dVlVVDEAGM 444 (992)
T PRK13889 365 GVVVGYAGTGKSAMLGVAREAWEAAGYEVRGAALSGIAAENLEGGSGIASRTIASLEHGWGQGRDLLTARDVLVIDEAGM 444 (992)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEECCCC
T ss_conf 89983388878899999999999779889811500689997653479431679999998746733478985899967655
Q ss_pred CCHHHHHHHHHHHHCC
Q ss_conf 6989999999986347
Q gi|254780552|r 117 LSIIVEEILYPAMEDF 132 (334)
Q Consensus 117 l~~~~q~~Ll~~mE~~ 132 (334)
....+..-|+...|..
T Consensus 445 VgSRqMarll~~Ae~A 460 (992)
T PRK13889 445 VGTRQLERVLSHAADA 460 (992)
T ss_pred CCHHHHHHHHHHHHHC
T ss_conf 7749999999999984
No 495
>TIGR01842 type_I_sec_PrtD type I secretion system ATPase; InterPro: IPR010128 Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N terminus, but rather carry signals located toward the extreme C terminus to direct type I secretion.; GO: 0005524 ATP binding, 0015031 protein transport, 0016021 integral to membrane.
Probab=95.36 E-value=0.0074 Score=36.97 Aligned_cols=35 Identities=31% Similarity=0.576 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 999999999998661467767079973788557789999998
Q gi|254780552|r 35 EACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76 (334)
Q Consensus 35 ~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~ 76 (334)
.+++.+...++++ + .+=.-||+|+|||||||+|-.
T Consensus 344 ~~l~gi~F~~~aG----e---~laIIGPSgSGKStLaR~~vG 378 (556)
T TIGR01842 344 PTLRGISFAIQAG----E---ALAIIGPSGSGKSTLARILVG 378 (556)
T ss_pred HHHCCCCEEECCC----C---EEEEECCCCCCHHHHHHHHHH
T ss_conf 4227862156377----4---588874786525889878872
No 496
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.35 E-value=0.01 Score=36.09 Aligned_cols=22 Identities=41% Similarity=0.699 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7997378855778999999861
Q gi|254780552|r 57 VLFVGPPGLGKTTLAQVVAREL 78 (334)
Q Consensus 57 ~Lf~GPpG~GKTtlA~iiA~~l 78 (334)
+-+.||.|+||||+-|+||.-.
T Consensus 31 vaLlGpSGaGKsTlLRiIAGLe 52 (345)
T COG1118 31 VALLGPSGAGKSTLLRIIAGLE 52 (345)
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9997789876788999985757
No 497
>TIGR00750 lao LAO/AO transport system ATPase; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli K-12, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase..
Probab=95.35 E-value=0.013 Score=35.41 Aligned_cols=23 Identities=48% Similarity=0.794 Sum_probs=20.8
Q ss_pred CEE-EECCCCCCHHHHHHHHHHHC
Q ss_conf 079-97378855778999999861
Q gi|254780552|r 56 HVL-FVGPPGLGKTTLAQVVAREL 78 (334)
Q Consensus 56 h~L-f~GPpG~GKTtlA~iiA~~l 78 (334)
|++ |+|+||+||.|+...+..++
T Consensus 39 ~~vG~TG~PGaGKSTl~~~l~~~l 62 (333)
T TIGR00750 39 HVVGITGVPGAGKSTLVEKLIMEL 62 (333)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 787664688885777999998999
No 498
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.33 E-value=0.014 Score=35.30 Aligned_cols=22 Identities=36% Similarity=0.620 Sum_probs=20.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7997378855778999999861
Q gi|254780552|r 57 VLFVGPPGLGKTTLAQVVAREL 78 (334)
Q Consensus 57 ~Lf~GPpG~GKTtlA~iiA~~l 78 (334)
+.+.||.|+||||+|+.+++++
T Consensus 2 I~I~G~~gsGKsT~a~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 7883688887258999999995
No 499
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter; InterPro: IPR005897 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family contains ABC-type bacteriocin transporter. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. Peptide bacteriocins are exported across the cytoplasmic membrane by a dedicated ATP-binding cassette (ABC) transporter. These ABC-transporters have an N-terminal peptidase domain that belong to MEROPS peptidase family C39 (clan CA); a central multi-pass transmembrane region and a C-terminal ABC transporter domain. These transporters have dual function: (i) they remove the N-terminal leader peptide from its bacteriocin precursor by cleavage at a Gly-Gly bond and (ii) transport the mature bacteriocin across the cytoplasmic membrane. This represents a novel strategy for secretion of bacterial proteins . Many bacteria are known to regulate diverse physiological processes through this system, such as bioluminescence, regulation of sporulation, virulence factor expression, antibiotics production, competence for genetic transformation, and activation of biofilm formation .; GO: 0008234 cysteine-type peptidase activity, 0019534 toxin transporter activity, 0006810 transport, 0016020 membrane.
Probab=95.32 E-value=0.012 Score=35.63 Aligned_cols=23 Identities=35% Similarity=0.557 Sum_probs=19.9
Q ss_pred CEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 07997378855778999999861
Q gi|254780552|r 56 HVLFVGPPGLGKTTLAQVVAREL 78 (334)
Q Consensus 56 h~Lf~GPpG~GKTtlA~iiA~~l 78 (334)
.+-+.|+.|.||||||+++=+=+
T Consensus 502 k~tiVGmSGSGKsTLaKLLV~Ff 524 (710)
T TIGR01193 502 KITIVGMSGSGKSTLAKLLVGFF 524 (710)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 48997367974899998752035
No 500
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.32 E-value=0.013 Score=35.44 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=19.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7997378855778999999861
Q gi|254780552|r 57 VLFVGPPGLGKTTLAQVVAREL 78 (334)
Q Consensus 57 ~Lf~GPpG~GKTtlA~iiA~~l 78 (334)
+-+.||.|+||||++++++.-.
T Consensus 38 vaiiG~sGsGKSTLl~ll~Gl~ 59 (269)
T PRK13648 38 TSIVGHNGSGKSTIAKLMIGIE 59 (269)
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999997999999996497
Done!