HHsearch alignment for GI: 254780552 and conserved domain: pfam00004
>pfam00004 AAA ATPase family associated with various cellular activities (AAA). AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Probab=99.80 E-value=9.9e-20 Score=140.17 Aligned_cols=110 Identities=39% Similarity=0.550 Sum_probs=83.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC------CHHHHHHHHHHHH--CCCHHHHHHHHHCCHH--------
Q ss_conf 79973788557789999998618985312576443------3467666666410--1637888757616989--------
Q gi|254780552|r 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA------KAGDLAALLTNLE--DRDVLFIDEIHRLSII-------- 120 (334)
Q Consensus 57 ~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~~~~~------~~~dl~~~~~~~~--~~~vlfiDEihrl~~~-------- 120 (334)
T Consensus 1 iLl~GppGtGKT~~a~~la~~~~~~~~~v~~~~~~~~~~g~~~~~i~~~f~~a~~~~p~Il~iDe~d~l~~~~~~~~~~~ 80 (131)
T pfam00004 1 LLLYGPPGTGKTTLAKAVAKELGAPFIEISGSELVSKYVGESEKRLRELFEAAKKLAPCVIFIDEIDALAGSRGSGGDSE 80 (131)
T ss_pred CEEECCCCCCHHHHHHHHHHHHCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHHHHCCCCCCCCCC
T ss_conf 98789999999999999999978985332420122233450688899999999974991898311677751678888875
Q ss_pred ---HHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCCCCCCHHHH-HCCCCEEECC
Q ss_conf ---999999986347510025678765200046674005520455433554544-2012067326
Q gi|254780552|r 121 ---VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQ-DRFGIPIRLN 181 (334)
Q Consensus 121 ---~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~~~l~~~l~-sR~~~~~~~~ 181 (334)
T Consensus 81 ~~~~~~~ll~~ld~~~~---------------~~~~v~~I~tTN~~~~ld~al~r~Rfd~~i~~p 130 (131)
T pfam00004 81 SRRVVNQLLTELDGFTS---------------SLSKVIVIAATNRPDKLDPALLRGRFDRIIEFP 130 (131)
T ss_pred CHHHHHHHHHHHHHCCC---------------CCCCEEEEEECCCHHHCCHHHHCCCCEEEEEEC
T ss_conf 13268789999850224---------------688769999759904499779628332899806