HHsearch alignment for GI: 254780552 and conserved domain: pfam00308
>pfam00308 Bac_DnaA Bacterial dnaA protein.
Probab=99.71 E-value=1.4e-16 Score=120.84 Aligned_cols=186 Identities=22% Similarity=0.295 Sum_probs=124.1
Q ss_pred CHHHH-CCH--HHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCCC-----CCCCCCCCCCCC-----
Q ss_conf 87782-397--99999999999986614677670799737885577899999986189-----853125764433-----
Q gi|254780552|r 26 TLEEF-TGQ--VEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGV-----NFRSTSGPVIAK----- 92 (334)
Q Consensus 26 ~l~dv-iGQ--~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~~-----~~~~~s~~~~~~----- 92 (334)
T Consensus 6 TFdnF~vg~~N~~a~~~~~~i~~---~~~~~~npl~i~G~~G~GKTHLLqA~~~~~~~~~~~~~v~yl~~~~~~~~~~~~ 82 (219)
T pfam00308 6 TFENFVIGSSNRFAHAAALAVAE---APGKAYNPLFIYGGVGLGKTHLLHAIGNYALRNFPNLRVVYLTSEEFLNDFVDA 82 (219)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHH---CCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHH
T ss_conf 71020236838999999999996---758767826998899998889999999999984999828884399999988999
Q ss_pred --HHHHHHHHHHHHCCCHHHHHHHHHCCH--HHHHHHHHHHH----CCCCCCCCCCCCCCCEEECCCCCCEEEECCCCCC
Q ss_conf --467666666410163788875761698--99999999863----4751002567876520004667400552045543
Q gi|254780552|r 93 --AGDLAALLTNLEDRDVLFIDEIHRLSI--IVEEILYPAME----DFQLDLMVGEGPSARSVKINLSRFTLIAATTRVG 164 (334)
Q Consensus 93 --~~dl~~~~~~~~~~~vlfiDEihrl~~--~~q~~Ll~~mE----~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~~ 164 (334)
T Consensus 83 l~~~~~~~f~~~l~~~d~l~iDDi~~l~~~~~~ee~lf~l~N~~~~~~~~---------------------lllts~~~p 141 (219)
T pfam00308 83 LRDNKIEAFKKSYRNVDLLLIDDIQFLAGKEKTQEEFFHTFNALHENNKQ---------------------IVLTSDRPP 141 (219)
T ss_pred HHCCCHHHHHHHHHHCCHHHHCCHHHHCCCHHHHHHHHHHHHHHHHCCCE---------------------EEEECCCCC
T ss_conf 98188889999976323365223676568647899999999999972986---------------------999779981
Q ss_pred ----CCCHHHHHCC--CCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf ----3554544201--2067326454799999877765412101111111233202210156788777543334554
Q gi|254780552|r 165 ----LLTNPLQDRF--GIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEV 235 (334)
Q Consensus 165 ----~l~~~l~sR~--~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~Gd~R~AlnlLe~v~d~a~~ 235 (334)
T Consensus 142 ~~l~~~~~dL~SRL~~g~~~~i~~pdd~~~~~iL~~~a~~r~l~l~~~v~~yl~~r~~R~~r~L~~~L~~L~~~~~~ 218 (219)
T pfam00308 142 KELEGFEDRLRSRFEWGLIIAIEPPDLETRLAILRKKAEEENINIPNEVLNFIAQRITDNVRELEGALNRLLAFASF 218 (219)
T ss_pred CCCCCCCHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCC
T ss_conf 00245327799998687566116999999999999999984999999999999984279899999999999985507