HHsearch alignment for GI: 254780552 and conserved domain: pfam01057
>pfam01057 Parvo_NS1 Parvovirus non-structural protein NS1. This family also contains the NS2 protein. Parvoviruses encode two non-structural proteins, NS1 and NS2. The mRNA for NS2 contains the coding sequence for the first 87 amino acids of NS1, then by an alternative splicing mechanism mRNA from a different reading frame, encoding the last 78 amino acids, makes up the full length of the NS2 mRNA. NS1, is the major non-structural protein. It is essential for DNA replication. It is an 83-kDa nuclear phosphoprotein. It has DNA helicase and ATPase activity.
Probab=96.29 E-value=0.0084 Score=36.64 Aligned_cols=26 Identities=42% Similarity=0.695 Sum_probs=22.6
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 70799737885577899999986189
Q gi|254780552|r 55 DHVLFVGPPGLGKTTLAQVVARELGV 80 (334)
Q Consensus 55 ~h~Lf~GPpG~GKTtlA~iiA~~l~~ 80 (334)
T Consensus 114 N~i~~~Gp~~TGks~la~ai~~~~~~ 139 (271)
T pfam01057 114 NTVWFYGPASTGKTNLAQAIAHAVPL 139 (271)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 56999889876789999999986895