HHsearch alignment for GI: 254780552 and conserved domain: pfam01443
>pfam01443 Viral_helicase1 Viral (Superfamily 1) RNA helicase. Helicase activity for this family has been demonstrated and NTPase activity. This helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis.
Probab=95.80 E-value=0.0037 Score=38.78 Aligned_cols=70 Identities=26% Similarity=0.282 Sum_probs=36.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCC---CCCCCHHHH-----HHHHHHH--HCCCHHHHHHHHHCCHHHHHHHH
Q ss_conf 7997378855778999999861898531257---644334676-----6666641--01637888757616989999999
Q gi|254780552|r 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG---PVIAKAGDL-----AALLTNL--EDRDVLFIDEIHRLSIIVEEILY 126 (334)
Q Consensus 57 ~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~---~~~~~~~dl-----~~~~~~~--~~~~vlfiDEihrl~~~~q~~Ll 126 (334)
T Consensus 1 ~vV~gvpGsGKSt~I~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~iiDE~~~~~~g~l~~~~ 80 (226)
T pfam01443 1 IVVHGVPGCGKSTLIRKLLRTDLTVIRPTAELRTEGKPDLPNLNVRTVDTFLMALLKPTGKILILDEYTLLPPGYILLLA 80 (226)
T ss_pred CEEEECCCCCHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCCCCCCCEEEEHHHCCCCCCCCEEEECCCCCCCHHHHHHHH
T ss_conf 95940799988999999986478642322777655677787777537744112467887788998964566816899987