HHsearch alignment for GI: 254780552 and conserved domain: pfam03215
>pfam03215 Rad17 Rad17 cell cycle checkpoint protein.
Probab=99.81 E-value=8.8e-19 Score=134.37 Aligned_cols=201 Identities=17% Similarity=0.209 Sum_probs=129.6
Q ss_pred CCCCCHHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 44120578750789877823979999999999998661467767079973788557789999998618985312576443
Q gi|254780552|r 12 VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA 91 (334)
Q Consensus 12 ~~~~~~~~~~lRP~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~~~~~ 91 (334)
T Consensus 3 ~~~~epW~ekyaP~~l~ELAVHKKKV~eV~~WL~~~~~~~~~~~iLlLtGPaG~GKTTTI~lLAkeLG~ei~EW~NP~~~ 82 (490)
T pfam03215 3 ADEHELWTEKYKPRRRDELAIHKKKIAEVDHWLKAVFLESNKQLILLLTGPSGCGKSTTVKVLSKELGIEIIEWSNPEYL 82 (490)
T ss_pred CCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCEEEEECCCCCC
T ss_conf 54358641430888789985535439999999999854777731899879899889999999999759689981486545
Q ss_pred -------CHHHH---------------HHHHHH------H----HCCCHHHHHHHHHC----CHHHHHHHHHHHHCCCCC
Q ss_conf -------34676---------------666664------1----01637888757616----989999999986347510
Q gi|254780552|r 92 -------KAGDL---------------AALLTN------L----EDRDVLFIDEIHRL----SIIVEEILYPAMEDFQLD 135 (334)
Q Consensus 92 -------~~~dl---------------~~~~~~------~----~~~~vlfiDEihrl----~~~~q~~Ll~~mE~~~i~ 135 (334)
T Consensus 83 ~~~~~~~q~~d~~g~~~~~~~S~~~~F~eFLlr~~ky~sL~~~~~~kriILIEE~Pn~~~~d~~~fr~~L~~~L~s~~~- 161 (490)
T pfam03215 83 HNPDNECQKPDFRGDCIVNSLSQMEQFREFLLRGARYGSLQGGGLKKKLILVEELPNQFYSDAEKFREVIREVLQSIWH- 161 (490)
T ss_pred CCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCC-
T ss_conf 6775022101212345766663777767887622335654457887359999658874423669999999999970899-
Q ss_pred CCCCCCCCCCEEECCCCCCEEEECCC-------C-------CCCC-CHHHHHCCC-CEEECCCCCHHHHHHHHHHHHHHC
Q ss_conf 02567876520004667400552045-------5-------4335-545442012-067326454799999877765412
Q gi|254780552|r 136 LMVGEGPSARSVKINLSRFTLIAATT-------R-------VGLL-TNPLQDRFG-IPIRLNFYEIEDLKTIVQRGAKLT 199 (334)
Q Consensus 136 i~~~~~~~a~~~~~~~~~f~lI~ATt-------~-------~~~l-~~~l~sR~~-~~~~~~~~~~~el~~il~~~~~~~ 199 (334)
T Consensus 162 ----------------~PlV~IiSEt~s~~g~~~~~~~~~ta~rLlg~eIl~hp~i~~I~FNpIApT~M~KaL~~I~~kE 225 (490)
T pfam03215 162 ----------------LPLIFCLTECNSLEGDNNQDRFGIDAETIMTKDILIMPRIDTITFNPIAPTFMKKALVRISVQE 225 (490)
T ss_pred ----------------CCEEEEEEECCCCCCCCCCCCCCCHHHHHCCHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHH
T ss_conf ----------------9879999704666677643323210786359888708896369868887889999999999985
Q ss_pred CC---HHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 10---1111111233202210156788777543
Q gi|254780552|r 200 GL---AVTDEAACEIAMRSRGTPRIAGRLLRRV 229 (334)
Q Consensus 200 ~i---~~~~~al~~ia~~s~Gd~R~AlnlLe~v 229 (334)
T Consensus 226 ~~~~~~~~~~~le~Ia~~S~GDIRsAInsLQF~ 258 (490)
T pfam03215 226 GKLKSPKSDSKLEVICQEAGGDLRSAINSLQFS 258 (490)
T ss_pred CCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 765567520389999986487299999999986