HHsearch alignment for GI: 254780552 and conserved domain: pfam03215

>pfam03215 Rad17 Rad17 cell cycle checkpoint protein.
Probab=99.81  E-value=8.8e-19  Score=134.37  Aligned_cols=201  Identities=17%  Similarity=0.209  Sum_probs=129.6

Q ss_pred             CCCCCHHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             44120578750789877823979999999999998661467767079973788557789999998618985312576443
Q gi|254780552|r   12 VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA   91 (334)
Q Consensus        12 ~~~~~~~~~~lRP~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~~~~~   91 (334)
T Consensus         3 ~~~~epW~ekyaP~~l~ELAVHKKKV~eV~~WL~~~~~~~~~~~iLlLtGPaG~GKTTTI~lLAkeLG~ei~EW~NP~~~   82 (490)
T pfam03215         3 ADEHELWTEKYKPRRRDELAIHKKKIAEVDHWLKAVFLESNKQLILLLTGPSGCGKSTTVKVLSKELGIEIIEWSNPEYL   82 (490)
T ss_pred             CCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCEEEEECCCCCC
T ss_conf             54358641430888789985535439999999999854777731899879899889999999999759689981486545


Q ss_pred             -------CHHHH---------------HHHHHH------H----HCCCHHHHHHHHHC----CHHHHHHHHHHHHCCCCC
Q ss_conf             -------34676---------------666664------1----01637888757616----989999999986347510
Q gi|254780552|r   92 -------KAGDL---------------AALLTN------L----EDRDVLFIDEIHRL----SIIVEEILYPAMEDFQLD  135 (334)
Q Consensus        92 -------~~~dl---------------~~~~~~------~----~~~~vlfiDEihrl----~~~~q~~Ll~~mE~~~i~  135 (334)
T Consensus        83 ~~~~~~~q~~d~~g~~~~~~~S~~~~F~eFLlr~~ky~sL~~~~~~kriILIEE~Pn~~~~d~~~fr~~L~~~L~s~~~-  161 (490)
T pfam03215        83 HNPDNECQKPDFRGDCIVNSLSQMEQFREFLLRGARYGSLQGGGLKKKLILVEELPNQFYSDAEKFREVIREVLQSIWH-  161 (490)
T ss_pred             CCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCC-
T ss_conf             6775022101212345766663777767887622335654457887359999658874423669999999999970899-


Q ss_pred             CCCCCCCCCCEEECCCCCCEEEECCC-------C-------CCCC-CHHHHHCCC-CEEECCCCCHHHHHHHHHHHHHHC
Q ss_conf             02567876520004667400552045-------5-------4335-545442012-067326454799999877765412
Q gi|254780552|r  136 LMVGEGPSARSVKINLSRFTLIAATT-------R-------VGLL-TNPLQDRFG-IPIRLNFYEIEDLKTIVQRGAKLT  199 (334)
Q Consensus       136 i~~~~~~~a~~~~~~~~~f~lI~ATt-------~-------~~~l-~~~l~sR~~-~~~~~~~~~~~el~~il~~~~~~~  199 (334)
T Consensus       162 ----------------~PlV~IiSEt~s~~g~~~~~~~~~ta~rLlg~eIl~hp~i~~I~FNpIApT~M~KaL~~I~~kE  225 (490)
T pfam03215       162 ----------------LPLIFCLTECNSLEGDNNQDRFGIDAETIMTKDILIMPRIDTITFNPIAPTFMKKALVRISVQE  225 (490)
T ss_pred             ----------------CCEEEEEEECCCCCCCCCCCCCCCHHHHHCCHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHH
T ss_conf             ----------------9879999704666677643323210786359888708896369868887889999999999985


Q ss_pred             CC---HHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf             10---1111111233202210156788777543
Q gi|254780552|r  200 GL---AVTDEAACEIAMRSRGTPRIAGRLLRRV  229 (334)
Q Consensus       200 ~i---~~~~~al~~ia~~s~Gd~R~AlnlLe~v  229 (334)
T Consensus       226 ~~~~~~~~~~~le~Ia~~S~GDIRsAInsLQF~  258 (490)
T pfam03215       226 GKLKSPKSDSKLEVICQEAGGDLRSAINSLQFS  258 (490)
T ss_pred             CCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf             765567520389999986487299999999986