HHsearch alignment for GI: 254780552 and conserved domain: pfam05496
>pfam05496 RuvB_N Holliday junction DNA helicase ruvB N-terminus. The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein.
Probab=100.00 E-value=0 Score=489.77 Aligned_cols=233 Identities=63% Similarity=1.008 Sum_probs=222.8
Q ss_pred HCCCCCCCCCC-HHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 02684444120-57875078987782397999999999999866146776707997378855778999999861898531
Q gi|254780552|r 6 GLLSRNVSQED-ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRS 84 (334)
Q Consensus 6 ~~~~~~~~~~~-~~~~~lRP~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~ 84 (334)
T Consensus 1 ~~~~~~~~~~~~~~~~~lRP~~l~e~vGQehl~~~l~~~i~a~~~~~~~l~h~lf~GPPG~GKTTlAriiAk~~~~~~~~ 80 (234)
T pfam05496 1 RLVSPEAQEEEDDVERSLRPRRLDEYIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRI 80 (234)
T ss_pred CCCCCCCCCCCHHHHHCCCCCCHHHCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEE
T ss_conf 94789999640447855498976660694999999999999887427776627887899998889999999840875376
Q ss_pred CCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCCC
Q ss_conf 25764433467666666410163788875761698999999998634751002567876520004667400552045543
Q gi|254780552|r 85 TSGPVIAKAGDLAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVG 164 (334)
Q Consensus 85 ~s~~~~~~~~dl~~~~~~~~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~~ 164 (334)
T Consensus 81 ~s~~~i~~~~di~~~l~~~~~~~ILFIDEIHr~nK~qqd~Llp~vE~g~i~i~ig~~~~A~~~~~e~P~FtLIgATTe~~ 160 (234)
T pfam05496 81 TSGPALEKPGDLAAILTNLEPGDVLFIDEIHRLNRAVEEILYPAMEDFRLDIVIGKGPSARSIRLDLPPFTLVGATTRAG 160 (234)
T ss_pred ECCHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCHHHHHHCCCCCCCCEEEEEECCCCCCEEEECCCCCEEEEEECCCCC
T ss_conf 14266643899999998458998899966543587688744553346169999636766324652689759985215666
Q ss_pred CCCHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 35545442012067326454799999877765412101111111233202210156788777543334554158
Q gi|254780552|r 165 LLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHA 238 (334)
Q Consensus 165 ~l~~~l~sR~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~Gd~R~AlnlLe~v~d~a~~~~~ 238 (334)
T Consensus 161 ~l~~pl~sR~~i~~~l~~l~~edl~~il~r~~~~l~i~i~~eal~~IA~~s~Gd~R~ALnlLe~v~d~a~~~~~ 234 (234)
T pfam05496 161 LLTSPLRDRFGIVLRLEFYSVEELEEIVKRSARILGVEIDEEGAAEIARRSRGTPRIANRLLRRVRDFAQVKGD 234 (234)
T ss_pred CCCHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 47777997621124424689999999999999983999599999999997799899998999999999987349