HHsearch alignment for GI: 254780552 and conserved domain: pfam06068
>pfam06068 TIP49 TIP49 C-terminus. This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the pfam00004 domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear
Probab=99.89 E-value=3.6e-22 Score=155.11 Aligned_cols=103 Identities=33% Similarity=0.376 Sum_probs=87.2
Q ss_pred CHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCC------------CCCCCHHHHHCC
Q ss_conf 37888757616989999999986347510025678765200046674005520455------------433554544201
Q gi|254780552|r 107 DVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTR------------VGLLTNPLQDRF 174 (334)
Q Consensus 107 ~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~------------~~~l~~~l~sR~ 174 (334)
T Consensus 277 GVLFIDEvHMLDiEcFsfLnralEs~------------------laP-ivI~ATNRG~~~IRGTd~~sPHGiP~DlLDRl 337 (395)
T pfam06068 277 GVLFIDEVHMLDIECFSFLNRALESE------------------LAP-IVILATNRGICTIRGTDIISPHGIPLDLLDRL 337 (395)
T ss_pred CCEEEECCHHCCHHHHHHHHHHHCCC------------------CCC-EEEEEECCCCEEECCCCCCCCCCCCHHHHHHE
T ss_conf 74688500000058998887765056------------------787-69998446520352567758889987777302
Q ss_pred CCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC-CCCHHHHHHHHHHH
Q ss_conf 20673264547999998777654121011111112332022-10156788777543
Q gi|254780552|r 175 GIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRS-RGTPRIAGRLLRRV 229 (334)
Q Consensus 175 ~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s-~Gd~R~AlnlLe~v 229 (334)
T Consensus 338 -lII~T~py~~~ei~~Ii~iRa~~E~v~l~~~al~~L~~ig~~~SLRYaiqLltpa 392 (395)
T pfam06068 338 -LIITTEPYTREEIKQILEIRAQEEGVEISEEALDLLAKIGEETSLRYAIQLLTPA 392 (395)
T ss_pred -EEEECCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHCHH
T ss_conf -5885688998999999998777607877989999999865320299999872587