HHsearch alignment for GI: 254780552 and conserved domain: smart00382
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.07 E-value=1.2e-10 Score=84.57 Aligned_cols=115 Identities=36% Similarity=0.420 Sum_probs=63.0
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHCCCC---CCCCCCCCC--------------------CCHHHHHHHHHHHHCC--CHH
Q ss_conf 707997378855778999999861898---531257644--------------------3346766666641016--378
Q gi|254780552|r 55 DHVLFVGPPGLGKTTLAQVVARELGVN---FRSTSGPVI--------------------AKAGDLAALLTNLEDR--DVL 109 (334)
Q Consensus 55 ~h~Lf~GPpG~GKTtlA~iiA~~l~~~---~~~~s~~~~--------------------~~~~dl~~~~~~~~~~--~vl 109 (334)
T Consensus 3 ~~ill~G~~GsGKTtl~~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi 82 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVL 82 (148)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEE
T ss_conf 78999999970299999999987266899689987599898889876530001122105199999999999984499899
Q ss_pred HHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCC-CCCCCHHHHHCCCCEEE
Q ss_conf 88757616989999999986347510025678765200046674005520455-43355454420120673
Q gi|254780552|r 110 FIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTR-VGLLTNPLQDRFGIPIR 179 (334)
Q Consensus 110 fiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~-~~~l~~~l~sR~~~~~~ 179 (334)
T Consensus 83 iiDei~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~vi~~~n~~~~~~~~~~~~~~~~~~~ 143 (148)
T smart00382 83 ILDEITSLLDAEQEALLLLLEELRLLL----------LLKSEKNLTVILTTNDEKDLGPALLRRRFDRRIV 143 (148)
T ss_pred EEECCHHHCCCCCHHHHHHHHHHHHHC----------CCCCCCCEEEEEEECCCCCCCHHHHCCCCCEEEE
T ss_conf 982750214762079999999999851----------7657899899995699522498770744787999